jgi.p|Nanoce1779_2|578235, mRNA_1864 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578235
Unique NamemRNA_1864
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length774
Alignment locationscaffold_4:216008..216987 +

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Properties
Property NameValue
TranscriptId578321
TrackFilteredModels2
ProteinId578235
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:216008..216987 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578235gene_1864Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578235mRNA_1864-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1864CDS_1864Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1864 ID=mRNA_1864|Name=jgi.p|Nanoce1779_2|578235|organism=Nannochloropsis oceanica|type=mRNA|length=774bp
AACAGGCTAAACATTCTGCTTCTGGCACTGACTGTGGTGGCGGGGATCAC
GAGGCAACCCGGTAAGTCGACTCGACAAGCCAAGCAGCCGCTCCTGCTGG
CTGTGAATCTCTGCCGCTTCGCTCCCCAGCTCCCATCGTAAGACACCAGC
ACCATGTCCTACGTTAAGCGGCTGTGGAAGCGGGGAATGCGTCGTCAGAC
ATCCTTTGAAAAGCACAGACAACATCCGCACCAGCAGGTTGAGTCCTCTA
GCCCCGCCCTTCTCTCCTCGTCCGATGCCGGTCCTGCGTCACGCACACCC
CTTGCACCGGGGAGCGAAGCCAGCGCTGTCCGGCGGCAACAAGAAGACCT
CGCACAGCAAGAAGCATTGATCGGAGCATTGCAGACGACTGTTCTGGAGC
AAAGCCGGAAGATCAAGGATTTAACTCAGACAATTGCGCGGATGCATGGC
GAGAGCCGACACACGGCTCACCACGTGGAAGCGTTGCAGCGCCTGCTTGC
CCAGGTGGTGGGGTGCGATGCTGATGGCAGCGGGAGTTGTGGTGTCAGAC
AGGAAGAAATGCGCGGTGGTGGGAAAGGAAAGAGTGGATCGAACTCGACA
GGCCATGGGGCAAGGATGCTAGCCCCGACGCCCATGCCGATGTCGAACTA
TGTGATGGCCAAGGAAGCAGCAACAGCAGCAGCAGCAGCAAAGACAACAA
CAGAAACAGTAACCACAGAAGCAGTAGCAGCTGACAGCAGCACCAGTATG
GAGTCACGCGATCAATAACAGCAG
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protein sequence of jgi.p|Nanoce1779_2|578235

>mRNA_1864-protein ID=mRNA_1864-protein|Name=jgi.p|Nanoce1779_2|578235|organism=Nannochloropsis oceanica|type=polypeptide|length=205bp
MSYVKRLWKRGMRRQTSFEKHRQHPHQQVESSSPALLSSSDAGPASRTPL
APGSEASAVRRQQEDLAQQEALIGALQTTVLEQSRKIKDLTQTIARMHGE
SRHTAHHVEALQRLLAQVVGCDADGSGSCGVRQEEMRGGGKGKSGSNSTG
HGARMLAPTPMPMSNYVMAKEAATAAAAAKTTTETVTTEAVAADSSTSME
SRDQ*
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mRNA from alignment at scaffold_4:216008..216987+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1864 ID=mRNA_1864|Name=jgi.p|Nanoce1779_2|578235|organism=Nannochloropsis oceanica|type=mRNA|length=980bp|location=Sequence derived from alignment at scaffold_4:216008..216987+ (Nannochloropsis oceanica)
AACAGGCTAAACATTCTGCTTCTGGCACTGACTGTGGTGGCGGGGATCAC
GAGGCAACCCGGTAAGTCGACTCGACAAGCCAAGCAGCCGCTCCTGCTGG
CTGTGAATCTCTGCCGCTTCGCTCCCCAGCTCCCATCGTAAGACACCAGC
ACCATGTCCTACGTTAAGCGGCTGTGGAAGCGGGGAATGCGTCGTCAGAC
ATCCTTTGAAAAGCACAGACAACATCCGCACCAGCAGGTTGAGTCCTCTA
GCCCCGCCCTTCTCTCCTCGTCCGATGCCGGTCCTGCGTCACGCACACCC
CTTGCACCGGGGAGCGAAGCCAGCGCTGTCCGGCGGCAACAAGAAGACCT
CGCACAGCAAGAAGCATTGATCGGAGCATTGCAGACGACTGTTCTGGAGC
AAAGCCGGAAGATCAAGGATTTAACTCAGACAATTGCGCGGATGCATGGC
GAGAGCCGACACACGGCTCACCACGTGGAAGCGTTGCAGCGCCTGCTTGC
CCAGGTGGTGGGGTGCGATGCTGATGGCAGCGGGAGTTGTGGTGTCAGAC
AGGAAGAAATGCGCGGTGGTGGGAAAGGAAAGAGTGGATCGAACTCGACA
GGCCATGGGGCAAGGATGCTAGCCCCGACGCCCATGCCGATGTCGAACTA
TGTGATGGCCAAGGAAGCAGCAACAGCAGCAGCAGCAGCAAAGACAACAA
CAGAAACAGTAACCACAGAAGCAGTAGCAGCTGACAGCAGCACCAGTATG
GAGGTGGGAACAGCGGCGCCGGCCAATGAACTTGAAAAGCAGGGGTTATA
CTCGTATATTAGCGGTTTTCTTCCTTCCTCTATCATTCCCTTCTATTCAA
CCGACAACACCCCTGCCGCTGCCTCCTCCTCTTCCTCCCCCTCCTCCTCC
ATAGCTTCGTGCAATGTTCTATGCTCTCACGCTGTCCATTCATCCGCCCC
CTTAACCAGTCACGCGATCAATAACAGCAG
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Coding sequence (CDS) from alignment at scaffold_4:216008..216987+

>mRNA_1864 ID=mRNA_1864|Name=jgi.p|Nanoce1779_2|578235|organism=Nannochloropsis oceanica|type=CDS|length=1230bp|location=Sequence derived from alignment at scaffold_4:216008..216987+ (Nannochloropsis oceanica)
ATGTCCTACGTTAAGCGGCTGTGGAAGCGGGGAATGCGTCGTCAGACATC
CTTTGAAAAGCACAGACAACATCCGCACCAGCAGGTTGAGTCCTCTAGCC
CCGCCCTTCTCTCCTCGTCCGATGCCGGTCCTGCGTCACGCACACCCCTT
GCACCGGGGAGCGAAGCCAGCGCTGTCCGGCGGCAACAAGAAGACCTCGC
ACAGCAAGAAGCATTGATCGGAGCATTGCAGACGACTGTTCTGGAGCAAA
GCCGGAAGATCAAGGATTTAACTCAGACAATTGCGCGGATGCATGGCGAG
AGCCGACACACGGCTCACCACGTGGAAGCGTTGCAGCGCCTGCTTGCCCA
GGTGGTGGGGTGCGATGCTGATGGCAGCGGGAGTTGTGGTGTCAGACAGG
AAGAAATGCGCGGTGGTGGGAAAGGAAAGAGTGGATCGAACTCGACAGGC
CATGGGGCAAGGATGCTAGCCCCGACGCCCATGCCGATGTCGAACTATGT
GATGGCCAAGGAAGCAGCAACAGCAGCAGCAGCAGCAAAGACAACAACAG
AAACAGTAACCACAGAAGCAGTAGCAGCTGACAGCAGCACCAGTATGGAG
TCACGCGATCAATAAATGTCCTACGTTAAGCGGCTGTGGAAGCGGGGAAT
GCGTCGTCAGACATCCTTTGAAAAGCACAGACAACATCCGCACCAGCAGG
TTGAGTCCTCTAGCCCCGCCCTTCTCTCCTCGTCCGATGCCGGTCCTGCG
TCACGCACACCCCTTGCACCGGGGAGCGAAGCCAGCGCTGTCCGGCGGCA
ACAAGAAGACCTCGCACAGCAAGAAGCATTGATCGGAGCATTGCAGACGA
CTGTTCTGGAGCAAAGCCGGAAGATCAAGGATTTAACTCAGACAATTGCG
CGGATGCATGGCGAGAGCCGACACACGGCTCACCACGTGGAAGCGTTGCA
GCGCCTGCTTGCCCAGGTGGTGGGGTGCGATGCTGATGGCAGCGGGAGTT
GTGGTGTCAGACAGGAAGAAATGCGCGGTGGTGGGAAAGGAAAGAGTGGA
TCGAACTCGACAGGCCATGGGGCAAGGATGCTAGCCCCGACGCCCATGCC
GATGTCGAACTATGTGATGGCCAAGGAAGCAGCAACAGCAGCAGCAGCAG
CAAAGACAACAACAGAAACAGTAACCACAGAAGCAGTAGCAGCTGACAGC
AGCACCAGTATGGAGTCACGCGATCAATAA
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Synonyms
Publications