jgi.p|Nanoce1779_2|524663, mRNA_1862 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|524663
Unique NamemRNA_1862
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length993
Alignment locationscaffold_4:209650..210770 -

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Properties
Property NameValue
TranscriptId524749
TrackFilteredModels2
ProteinId524663
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:209650..210770 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|524663gene_1862Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|524663mRNA_1862-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1862CDS_1862Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1862 ID=mRNA_1862|Name=jgi.p|Nanoce1779_2|524663|organism=Nannochloropsis oceanica|type=mRNA|length=993bp
ATGCACGCCACAACTGTGCCCCGTCGCGTGGGCCTTGAGGCTATACCCGA
TGCTGATTTGAAGGAGGCCGACAAGACCCCTCCCCCCTCAACTTTCTTTG
AGTGCACCCTCCAGGCATATAACTCGGCCGCAGCGGCCATCAAAGACGGA
TATAAGCTGCTCGAGGTGGAGTTTCCTCCCCTACCCGCCGCGGAGATGGC
GTCGCAGGCCTCAAGTGCTAACAGCATTGGCTCCGCGAATATTAATCTCG
CCACAGACGTCGCCAAATACTTCGTCCGTGAAGGCAAGCAAGTTGTCATC
CTCGTCCCGGATAAGGACGAACTCGACCTAATCGAAGAAGGCATGGGCAC
CCTCTCCCCTGCCCCAAATGTCACCATCCGTGCCGTCCGCGCCCGCAATT
CAGAGTCCGCCGAGACGATGGGCGAGCTATTGCTCGGAATTTTCTCCCGT
GCCGCCAAAGGACGTGTGTTGCCGTGGTACAATGCCGATATCTACATCAG
CGTCATCACCTCCGGCCAAGAACTCCCTGACCTGGAAGCCCTCCACGCTG
CAGACCCCGACAAGCCCATGATTTTTTTCAACCTTAACTTGGAGACGCAC
CGAGGCGACCTAGGGCTTCCCGCGTTTCCTTCTAAAGACCTCCACTACCG
CTTTCTCTCTCAGATCAAGCCCGCCTACCTGTTGCGCACGCGGCAGTACG
CCCAGACCCTCTCCCGGCCCCCTTTTATCCTCAACTACCAAGGCGCCCTC
TTCCGCACCTACCCCGGTGGATATCAATGCATGCTTGACACGGGCAATGG
ACGATATCGACGGGTGGAGACCTCTAAGAACCGCCCAGCGTTGAACGGGT
TTAAGGAAATCATCACGGAGGCATTGGATGTGGATGATAACGAGACGCTG
GCTGCTTTGAGGAAGGGGGCTTTTAGCAAGGGAACGTGGTGGGAGAAGGA
GGAGAATCAGGTGAAGGAGGTATCGGATAACTGGAGGACGTAG
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protein sequence of jgi.p|Nanoce1779_2|524663

>mRNA_1862-protein ID=mRNA_1862-protein|Name=jgi.p|Nanoce1779_2|524663|organism=Nannochloropsis oceanica|type=polypeptide|length=331bp
MHATTVPRRVGLEAIPDADLKEADKTPPPSTFFECTLQAYNSAAAAIKDG
YKLLEVEFPPLPAAEMASQASSANSIGSANINLATDVAKYFVREGKQVVI
LVPDKDELDLIEEGMGTLSPAPNVTIRAVRARNSESAETMGELLLGIFSR
AAKGRVLPWYNADIYISVITSGQELPDLEALHAADPDKPMIFFNLNLETH
RGDLGLPAFPSKDLHYRFLSQIKPAYLLRTRQYAQTLSRPPFILNYQGAL
FRTYPGGYQCMLDTGNGRYRRVETSKNRPALNGFKEIITEALDVDDNETL
AALRKGAFSKGTWWEKEENQVKEVSDNWRT*
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mRNA from alignment at scaffold_4:209650..210770-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1862 ID=mRNA_1862|Name=jgi.p|Nanoce1779_2|524663|organism=Nannochloropsis oceanica|type=mRNA|length=1121bp|location=Sequence derived from alignment at scaffold_4:209650..210770- (Nannochloropsis oceanica)
ATGCACGCCACAACTGTGCCCCGTCGCGTGGGCCTTGAGGCTATACCCGA
TGCTGATTTGAAGGAGGCCGACAAGACCCCTCCCCCCTCAACTTTCTTTG
AGTGCACCCTCCAGGCATATAACTCGGCCGCAGCGGCCATCAAAGACGGA
TATAAGCTGCTCGAGGTGGAGTTTCCTCCCCTACCCGCCGCGGAGATGGC
GTCGCAGGTATGCTGACTCTGATAAAAAGTTGCTGTACTTTCGCTCTATG
TCTTTTCTTCAAGAAAAAAAGATAGAAAGCATCAGGTCATCCTCATCCTC
ATCCCTCCTCATTTTCCTCCCTCCCTCCCTCAAAGGCCTCAAGTGCTAAC
AGCATTGGCTCCGCGAATATTAATCTCGCCACAGACGTCGCCAAATACTT
CGTCCGTGAAGGCAAGCAAGTTGTCATCCTCGTCCCGGATAAGGACGAAC
TCGACCTAATCGAAGAAGGCATGGGCACCCTCTCCCCTGCCCCAAATGTC
ACCATCCGTGCCGTCCGCGCCCGCAATTCAGAGTCCGCCGAGACGATGGG
CGAGCTATTGCTCGGAATTTTCTCCCGTGCCGCCAAAGGACGTGTGTTGC
CGTGGTACAATGCCGATATCTACATCAGCGTCATCACCTCCGGCCAAGAA
CTCCCTGACCTGGAAGCCCTCCACGCTGCAGACCCCGACAAGCCCATGAT
TTTTTTCAACCTTAACTTGGAGACGCACCGAGGCGACCTAGGGCTTCCCG
CGTTTCCTTCTAAAGACCTCCACTACCGCTTTCTCTCTCAGATCAAGCCC
GCCTACCTGTTGCGCACGCGGCAGTACGCCCAGACCCTCTCCCGGCCCCC
TTTTATCCTCAACTACCAAGGCGCCCTCTTCCGCACCTACCCCGGTGGAT
ATCAATGCATGCTTGACACGGGCAATGGACGATATCGACGGGTGGAGACC
TCTAAGAACCGCCCAGCGTTGAACGGGTTTAAGGAAATCATCACGGAGGC
ATTGGATGTGGATGATAACGAGACGCTGGCTGCTTTGAGGAAGGGGGCTT
TTAGCAAGGGAACGTGGTGGGAGAAGGAGGAGAATCAGGTGAAGGAGGTA
TCGGATAACTGGAGGACGTAG
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Coding sequence (CDS) from alignment at scaffold_4:209650..210770-

>mRNA_1862 ID=mRNA_1862|Name=jgi.p|Nanoce1779_2|524663|organism=Nannochloropsis oceanica|type=CDS|length=1986bp|location=Sequence derived from alignment at scaffold_4:209650..210770- (Nannochloropsis oceanica)
GCCTCAAGTGCTAACAGCATTGGCTCCGCGAATATTAATCTCGCCACAGA
CGTCGCCAAATACTTCGTCCGTGAAGGCAAGCAAGTTGTCATCCTCGTCC
CGGATAAGGACGAACTCGACCTAATCGAAGAAGGCATGGGCACCCTCTCC
CCTGCCCCAAATGTCACCATCCGTGCCGTCCGCGCCCGCAATTCAGAGTC
CGCCGAGACGATGGGCGAGCTATTGCTCGGAATTTTCTCCCGTGCCGCCA
AAGGACGTGTGTTGCCGTGGTACAATGCCGATATCTACATCAGCGTCATC
ACCTCCGGCCAAGAACTCCCTGACCTGGAAGCCCTCCACGCTGCAGACCC
CGACAAGCCCATGATTTTTTTCAACCTTAACTTGGAGACGCACCGAGGCG
ACCTAGGGCTTCCCGCGTTTCCTTCTAAAGACCTCCACTACCGCTTTCTC
TCTCAGATCAAGCCCGCCTACCTGTTGCGCACGCGGCAGTACGCCCAGAC
CCTCTCCCGGCCCCCTTTTATCCTCAACTACCAAGGCGCCCTCTTCCGCA
CCTACCCCGGTGGATATCAATGCATGCTTGACACGGGCAATGGACGATAT
CGACGGGTGGAGACCTCTAAGAACCGCCCAGCGTTGAACGGGTTTAAGGA
AATCATCACGGAGGCATTGGATGTGGATGATAACGAGACGCTGGCTGCTT
TGAGGAAGGGGGCTTTTAGCAAGGGAACGTGGTGGGAGAAGGAGGAGAAT
CAGGTGAAGGAGGTATCGGATAACTGGAGGACGTAGATGCACGCCACAAC
TGTGCCCCGTCGCGTGGGCCTTGAGGCTATACCCGATGCTGATTTGAAGG
AGGCCGACAAGACCCCTCCCCCCTCAACTTTCTTTGAGTGCACCCTCCAG
GCATATAACTCGGCCGCAGCGGCCATCAAAGACGGATATAAGCTGCTCGA
GGTGGAGTTTCCTCCCCTACCCGCCGCGGAGATGGCGTCGCAGGCCTCAA
GTGCTAACAGCATTGGCTCCGCGAATATTAATCTCGCCACAGACGTCGCC
AAATACTTCGTCCGTGAAGGCAAGCAAGTTGTCATCCTCGTCCCGGATAA
GGACGAACTCGACCTAATCGAAGAAGGCATGGGCACCCTCTCCCCTGCCC
CAAATGTCACCATCCGTGCCGTCCGCGCCCGCAATTCAGAGTCCGCCGAG
ACGATGGGCGAGCTATTGCTCGGAATTTTCTCCCGTGCCGCCAAAGGACG
TGTGTTGCCGTGGTACAATGCCGATATCTACATCAGCGTCATCACCTCCG
GCCAAGAACTCCCTGACCTGGAAGCCCTCCACGCTGCAGACCCCGACAAG
CCCATGATTTTTTTCAACCTTAACTTGGAGACGCACCGAGGCGACCTAGG
GCTTCCCGCGTTTCCTTCTAAAGACCTCCACTACCGCTTTCTCTCTCAGA
TCAAGCCCGCCTACCTGTTGCGCACGCGGCAGTACGCCCAGACCCTCTCC
CGGCCCCCTTTTATCCTCAACTACCAAGGCGCCCTCTTCCGCACCTACCC
CGGTGGATATCAATGCATGCTTGACACGGGCAATGGACGATATCGACGGG
TGGAGACCTCTAAGAACCGCCCAGCGTTGAACGGGTTTAAGGAAATCATC
ACGGAGGCATTGGATGTGGATGATAACGAGACGCTGGCTGCTTTGAGGAA
GGGGGCTTTTAGCAAGGGAACGTGGTGGGAGAAGGAGGAGAATCAGGTGA
AGGAGGTATCGGATAACTGGAGGACGTAGATGCACGCCACAACTGTGCCC
CGTCGCGTGGGCCTTGAGGCTATACCCGATGCTGATTTGAAGGAGGCCGA
CAAGACCCCTCCCCCCTCAACTTTCTTTGAGTGCACCCTCCAGGCATATA
ACTCGGCCGCAGCGGCCATCAAAGACGGATATAAGCTGCTCGAGGTGGAG
TTTCCTCCCCTACCCGCCGCGGAGATGGCGTCGCAG
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Synonyms
Publications