jgi.p|Nanoce1779_2|578225, mRNA_1861 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578225
Unique NamemRNA_1861
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length657
Alignment locationscaffold_4:208702..209358 +

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Properties
Property NameValue
TranscriptId578311
TrackFilteredModels2
ProteinId578225
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:208702..209358 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578225gene_1861Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578225mRNA_1861-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1861CDS_1861Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1861 ID=mRNA_1861|Name=jgi.p|Nanoce1779_2|578225|organism=Nannochloropsis oceanica|type=mRNA|length=657bp
ACAACAGGTACAACGATTATAACGTGAACAAAAACATTGTAATGGTGCGA
CTGCGGGCTGATAAGCTTTTGGCTACTTCGTCCTCTTCCAATTCCAATGC
AGCTGCTTCAACTGCTCGATCATCCGACTCAGCTGCTGAGGCGTTCCCGT
GTGTCCTTTTGACCCTCTTTCGCCTCAGCGCCGTGCTTGCGTGGGCCCTG
GTCAAGCTTGATGCCATATTCTCGCACCCTTCGACCGAAATTTACACCCG
CCCCCGGATGGAATCGTGGAAAGCTATTGCATTCATGGCGGTAGTCGTTT
TCATGCCCTCCCGCCAGCCTGCCCTCTTCCTCCGCTTCGCCCTGCTTTGG
GCAGTGCTTGCTTTTGGGTACAGCTTCCTCCTGCCCGGCATGGTATTGCT
TAACAAGCAGCGGCTGCAGGGAAGGGGCTTGCTTTCATTGTCTTTGTCTT
TGGAGGAGGAATGGCTGCGATGTGCAGTGATGGCCAACGCGCTTGTGGGT
CTAGTGCTGGTGGGCAAGTTATGTCTGGGATCCCTTCACAAGAAACGAGG
AGACGGAGGAGGAAGAATAAGGCGAGGAGGTCGAGACCTGCAAGCACAAA
GACGGAAACAAATTTAAGTCGCAGCACTAAAGGCAAAAGAAAAAACAAAG
ACGTGCC
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protein sequence of jgi.p|Nanoce1779_2|578225

>mRNA_1861-protein ID=mRNA_1861-protein|Name=jgi.p|Nanoce1779_2|578225|organism=Nannochloropsis oceanica|type=polypeptide|length=192bp
MVRLRADKLLATSSSSNSNAAASTARSSDSAAEAFPCVLLTLFRLSAVLA
WALVKLDAIFSHPSTEIYTRPRMESWKAIAFMAVVVFMPSRQPALFLRFA
LLWAVLAFGYSFLLPGMVLLNKQRLQGRGLLSLSLSLEEEWLRCAVMANA
LVGLVLVGKLCLGSLHKKRGDGGGRIRRGGRDLQAQRRKQI*
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mRNA from alignment at scaffold_4:208702..209358+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1861 ID=mRNA_1861|Name=jgi.p|Nanoce1779_2|578225|organism=Nannochloropsis oceanica|type=mRNA|length=657bp|location=Sequence derived from alignment at scaffold_4:208702..209358+ (Nannochloropsis oceanica)
ACAACAGGTACAACGATTATAACGTGAACAAAAACATTGTAATGGTGCGA
CTGCGGGCTGATAAGCTTTTGGCTACTTCGTCCTCTTCCAATTCCAATGC
AGCTGCTTCAACTGCTCGATCATCCGACTCAGCTGCTGAGGCGTTCCCGT
GTGTCCTTTTGACCCTCTTTCGCCTCAGCGCCGTGCTTGCGTGGGCCCTG
GTCAAGCTTGATGCCATATTCTCGCACCCTTCGACCGAAATTTACACCCG
CCCCCGGATGGAATCGTGGAAAGCTATTGCATTCATGGCGGTAGTCGTTT
TCATGCCCTCCCGCCAGCCTGCCCTCTTCCTCCGCTTCGCCCTGCTTTGG
GCAGTGCTTGCTTTTGGGTACAGCTTCCTCCTGCCCGGCATGGTATTGCT
TAACAAGCAGCGGCTGCAGGGAAGGGGCTTGCTTTCATTGTCTTTGTCTT
TGGAGGAGGAATGGCTGCGATGTGCAGTGATGGCCAACGCGCTTGTGGGT
CTAGTGCTGGTGGGCAAGTTATGTCTGGGATCCCTTCACAAGAAACGAGG
AGACGGAGGAGGAAGAATAAGGCGAGGAGGTCGAGACCTGCAAGCACAAA
GACGGAAACAAATTTAAGTCGCAGCACTAAAGGCAAAAGAAAAAACAAAG
ACGTGCC
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Coding sequence (CDS) from alignment at scaffold_4:208702..209358+

>mRNA_1861 ID=mRNA_1861|Name=jgi.p|Nanoce1779_2|578225|organism=Nannochloropsis oceanica|type=CDS|length=576bp|location=Sequence derived from alignment at scaffold_4:208702..209358+ (Nannochloropsis oceanica)
ATGGTGCGACTGCGGGCTGATAAGCTTTTGGCTACTTCGTCCTCTTCCAA
TTCCAATGCAGCTGCTTCAACTGCTCGATCATCCGACTCAGCTGCTGAGG
CGTTCCCGTGTGTCCTTTTGACCCTCTTTCGCCTCAGCGCCGTGCTTGCG
TGGGCCCTGGTCAAGCTTGATGCCATATTCTCGCACCCTTCGACCGAAAT
TTACACCCGCCCCCGGATGGAATCGTGGAAAGCTATTGCATTCATGGCGG
TAGTCGTTTTCATGCCCTCCCGCCAGCCTGCCCTCTTCCTCCGCTTCGCC
CTGCTTTGGGCAGTGCTTGCTTTTGGGTACAGCTTCCTCCTGCCCGGCAT
GGTATTGCTTAACAAGCAGCGGCTGCAGGGAAGGGGCTTGCTTTCATTGT
CTTTGTCTTTGGAGGAGGAATGGCTGCGATGTGCAGTGATGGCCAACGCG
CTTGTGGGTCTAGTGCTGGTGGGCAAGTTATGTCTGGGATCCCTTCACAA
GAAACGAGGAGACGGAGGAGGAAGAATAAGGCGAGGAGGTCGAGACCTGC
AAGCACAAAGACGGAAACAAATTTAA
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Synonyms
Publications