Properties
| Property Name | Value |
|---|
| TranscriptId | 578307 |
| Track | FilteredModels2 |
| ProteinId | 578221 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_4 | supercontig | scaffold_4:206718..208492 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1860 ID=mRNA_1860|Name=jgi.p|Nanoce1779_2|578221|organism=Nannochloropsis oceanica|type=mRNA|length=1346bp
AGTTTTTTTATCCCTTTCCTAGATTTTCCTCCTTGGCCTTGGACGGACGC
GACGACCTCCCCACCCCACCCGCTCCGACAAGCCCCCCTTTCGAGCTCAG
GCACAGGTCAAGAACCCACCATTTCTCTATAGAAGTATGGCGGAAGAGTC
CTCAGAGCGCTATGCGGGGCGGGGCGTCTCATCAACAAAGTCGGAAGTCC
ATAGTGCCATCAAAAGAATAGACAAGGGCTTGTATCCCCAGGCCTTTTGC
AAGGTCATACCAGACGTCTTGACTAACGACCCGGACTGGGCGTTGGTGAT
GCACGCGGACGGAGCTGGGACCAAATCCTCCCTCGCCTACATGTACTGGA
AAGAAACTGGAGACTTAAGTGTTTGGAAGGGTATTGCCCAAGATGCTCTG
ATCATGAACCTTGACGATCTTCTCTGTGTAGGGGTGACGGACAACATCCT
CCTTTCCTCGACCATTGGCCGAAACAAAAATTTGATCCCTGGAGAGGTGC
TTGCGGCTATCATCAATGGTACACAGGAGCTATTGGATGATTTAGCGAAG
TGGGGGGTGCAGATCACGAGCACGGGGGGGGAGACGGCGGATGTGGGGGA
TTTGGTGCGGACGATCATCGTCGATTCGACAGTAACGGCCAGGGTGAGGA
GAAGCGACATTGTGGATAACGCCAATATTCAAGCAGGAGACCTCATAGTT
GGCCTCTCGTCCTCCGGGCAAGCCAAATACGAACACGCCTATAACGGTGG
CATGGGCTCTAATGGCCTCACTTCTGCCCGACACGACGTTTTCAGCAAAA
TTCTCGCCGAAAAATACCCGGAGTCCTTCGACCCCTTCCTCCCTCCGGCC
CTCGTTTACAGCGGCAGCAAAGCCCTGACGGACCCTGTGGAAGGGTCTCC
ATTGGACGCCGGCAAGCTCGTCCTCAGCCCGACGCGGACGTACGCTCCTA
TCATCAAAAAGATGCTCGATAAATACAGGGCACAGATCCATGGCATGGTC
CACTGCTCCGGCGGTGCCCAAACGAAAATTCTCCACTTTTTGAGCGAAGG
GTTGCAGGTGGTAAAAGACGCCATGTTCCCCATCCCACCTTTATTTGGCT
TGATCCAGGCAGAGAGTGGGACGGGCTGGAAGGAGATGTACCAGGTGTTC
AACATGGGCCATCGCATGGAGCTCTATGTCCCTTCCGCTGAGGTTGCCGC
CGGTCTGATTGCTATCTCGGAGGAGCTGGGCGTTAATGCCCAAGTAATCG
GCCGCGTTGAGGCGGCATCGGAGGGGGTCAAGAGGCAAGTCACCATCTCG
GGGCCGCATGGTGTGTTTACCTATGTGTAGGGAGGGAGGGAAGGAG back to topprotein sequence of jgi.p|Nanoce1779_2|578221 >mRNA_1860-protein ID=mRNA_1860-protein|Name=jgi.p|Nanoce1779_2|578221|organism=Nannochloropsis oceanica|type=polypeptide|length=398bp
MAEESSERYAGRGVSSTKSEVHSAIKRIDKGLYPQAFCKVIPDVLTNDPD
WALVMHADGAGTKSSLAYMYWKETGDLSVWKGIAQDALIMNLDDLLCVGV
TDNILLSSTIGRNKNLIPGEVLAAIINGTQELLDDLAKWGVQITSTGGET
ADVGDLVRTIIVDSTVTARVRRSDIVDNANIQAGDLIVGLSSSGQAKYEH
AYNGGMGSNGLTSARHDVFSKILAEKYPESFDPFLPPALVYSGSKALTDP
VEGSPLDAGKLVLSPTRTYAPIIKKMLDKYRAQIHGMVHCSGGAQTKILH
FLSEGLQVVKDAMFPIPPLFGLIQAESGTGWKEMYQVFNMGHRMELYVPS
AEVAAGLIAISEELGVNAQVIGRVEAASEGVKRQVTISGPHGVFTYV* back to topmRNA from alignment at scaffold_4:206718..208492- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1860 ID=mRNA_1860|Name=jgi.p|Nanoce1779_2|578221|organism=Nannochloropsis oceanica|type=mRNA|length=1775bp|location=Sequence derived from alignment at scaffold_4:206718..208492- (Nannochloropsis oceanica)
AGTTTTTTTATCCCTTTCCTAGATTTTCCTCCTTGGCCTTGGACGGACGC
GACGACCTCCCCACCCCACCCGCTCCGACAAGCCCCCCTTTCGAGCTCAG
GCACAGGTCAAGAACCCACCATTTCTCTATAGAAGTATGGCGGAAGAGTC
CTCAGAGCGCTATGCGGGGCGGGGCGTCTCATCAACAAAGTCGGAAGTCC
ATAGTGCCATCAAAAGAATAGACAAGGGCTTGTATCCCCAGGCCTTTTGC
AAGGTCATACCAGACGTCTTGACTAACGACCCGGACTGGGCGTTGGTGAT
GCACGCGGACGGTAGGATTGTGGGGGGAGAAGAAAGGATGGGATGAGGGA
CAGCAGAAACAGAGACAAAGGCATTCCAAAAGCATTGAGCACCGCTAATT
TTCTCCCTCCCCCTCTCCCCCCTTCACAGGAGCTGGGACCAAATCCTCCC
TCGCCTACATGTACTGGAAAGAAACTGGAGACTTAAGTGTTTGGAAGGGT
ATTGCCCAAGATGCTCTGATCATGAACCTTGACGATCTTCTCTGTGTAGG
GGTGACGGACAACATCCTCCTTTCCTCGACCATTGGCCGAAACAAAAATT
TGATCCCTGGAGAGGTGCTTGCGGCTATCATCAATGGTACACAGGAGCTA
TTGGATGATTTAGCGAAGTGGGGGGTGCAGATCACGAGCACGGGGGGGGA
GACGGCGGATGTGGGGGATTTGGTGCGGACGATCATCGTCGATTCGACAG
TAACGGCCAGGGTGAGGAGAAGCGACATTGTGGATAACGCCAATATTCAA
GCAGGTGGGCGAGGAAGGAAGAAAGGGATGAATGAATGAAGGAATGAAGG
GGGGAGAGAAGAAGAGGAGAGGCATTCAGAAAGGTATGGCAGAAATCACG
CTAGATTCTTACTTCCATCCATTTTGACCCTCTGCTCCCCTCCTTCCCAG
GAGACCTCATAGTTGGCCTCTCGTCCTCCGGGCAAGCCAAATACGAACAC
GCCTATAACGGTGGCATGGGCTCTAATGGCCTCACTTCTGCCCGACACGA
CGTTTTCAGCAAAATTCTCGCCGAAAAATACCCGGAGTCCTTCGACCCCT
TCCTCCCTCCGGCCCTCGTTTACAGCGGCAGCAAAGCCCTGACGGACCCT
GTGGAAGGGTCTCCATTGGACGCCGGCAAGCTCGTCCTCAGCCCGACGCG
GACGTACGCTCCTATCATCAAAAAGATGCTCGATAAATACAGGGCACAGA
TCCATGGCATGGTCCACTGCTCCGGCGGTGCCCAAACGAAAATTCTCCAC
TTTTTGAGCGAAGGGTTGCAGGTGGTAAAAGACGCCATGTTCCCCATCCC
ACCTTTATTTGGCTTGATCCAGGCAGAGAGTGGGACGGGCTGGAAGGAGA
TGTACCAGGTAGGGAAGGAGGGAGGGAGAGGAGGGGGAGAGGAAGGGGCT
TTCTGGAGCGGGGGGTGGTCGTCTCTGTGACATGGACATTTCCTTTACTC
AGTTCATCTCTTCGCGATCTCACCACTTTTCCACCCTTCCTCTATCCCTC
CCCCTCGCCCTCCTTACTTCAAGGTGTTCAACATGGGCCATCGCATGGAG
CTCTATGTCCCTTCCGCTGAGGTTGCCGCCGGTCTGATTGCTATCTCGGA
GGAGCTGGGCGTTAATGCCCAAGTAATCGGCCGCGTTGAGGCGGCATCGG
AGGGGGTCAAGAGGCAAGTCACCATCTCGGGGCCGCATGGTGTGTTTACC
TATGTGTAGGGAGGGAGGGAAGGAG back to topCoding sequence (CDS) from alignment at scaffold_4:206718..208492- >mRNA_1860 ID=mRNA_1860|Name=jgi.p|Nanoce1779_2|578221|organism=Nannochloropsis oceanica|type=CDS|length=4776bp|location=Sequence derived from alignment at scaffold_4:206718..208492- (Nannochloropsis oceanica)
GTGTTCAACATGGGCCATCGCATGGAGCTCTATGTCCCTTCCGCTGAGGT
TGCCGCCGGTCTGATTGCTATCTCGGAGGAGCTGGGCGTTAATGCCCAAG
TAATCGGCCGCGTTGAGGCGGCATCGGAGGGGGTCAAGAGGCAAGTCACC
ATCTCGGGGCCGCATGGTGTGTTTACCTATGTGTAGGAGACCTCATAGTT
GGCCTCTCGTCCTCCGGGCAAGCCAAATACGAACACGCCTATAACGGTGG
CATGGGCTCTAATGGCCTCACTTCTGCCCGACACGACGTTTTCAGCAAAA
TTCTCGCCGAAAAATACCCGGAGTCCTTCGACCCCTTCCTCCCTCCGGCC
CTCGTTTACAGCGGCAGCAAAGCCCTGACGGACCCTGTGGAAGGGTCTCC
ATTGGACGCCGGCAAGCTCGTCCTCAGCCCGACGCGGACGTACGCTCCTA
TCATCAAAAAGATGCTCGATAAATACAGGGCACAGATCCATGGCATGGTC
CACTGCTCCGGCGGTGCCCAAACGAAAATTCTCCACTTTTTGAGCGAAGG
GTTGCAGGTGGTAAAAGACGCCATGTTCCCCATCCCACCTTTATTTGGCT
TGATCCAGGCAGAGAGTGGGACGGGCTGGAAGGAGATGTACCAGGAGCTG
GGACCAAATCCTCCCTCGCCTACATGTACTGGAAAGAAACTGGAGACTTA
AGTGTTTGGAAGGGTATTGCCCAAGATGCTCTGATCATGAACCTTGACGA
TCTTCTCTGTGTAGGGGTGACGGACAACATCCTCCTTTCCTCGACCATTG
GCCGAAACAAAAATTTGATCCCTGGAGAGGTGCTTGCGGCTATCATCAAT
GGTACACAGGAGCTATTGGATGATTTAGCGAAGTGGGGGGTGCAGATCAC
GAGCACGGGGGGGGAGACGGCGGATGTGGGGGATTTGGTGCGGACGATCA
TCGTCGATTCGACAGTAACGGCCAGGGTGAGGAGAAGCGACATTGTGGAT
AACGCCAATATTCAAGCAGATGGCGGAAGAGTCCTCAGAGCGCTATGCGG
GGCGGGGCGTCTCATCAACAAAGTCGGAAGTCCATAGTGCCATCAAAAGA
ATAGACAAGGGCTTGTATCCCCAGGCCTTTTGCAAGGTCATACCAGACGT
CTTGACTAACGACCCGGACTGGGCGTTGGTGATGCACGCGGACGGTGTTC
AACATGGGCCATCGCATGGAGCTCTATGTCCCTTCCGCTGAGGTTGCCGC
CGGTCTGATTGCTATCTCGGAGGAGCTGGGCGTTAATGCCCAAGTAATCG
GCCGCGTTGAGGCGGCATCGGAGGGGGTCAAGAGGCAAGTCACCATCTCG
GGGCCGCATGGTGTGTTTACCTATGTGTAGGAGACCTCATAGTTGGCCTC
TCGTCCTCCGGGCAAGCCAAATACGAACACGCCTATAACGGTGGCATGGG
CTCTAATGGCCTCACTTCTGCCCGACACGACGTTTTCAGCAAAATTCTCG
CCGAAAAATACCCGGAGTCCTTCGACCCCTTCCTCCCTCCGGCCCTCGTT
TACAGCGGCAGCAAAGCCCTGACGGACCCTGTGGAAGGGTCTCCATTGGA
CGCCGGCAAGCTCGTCCTCAGCCCGACGCGGACGTACGCTCCTATCATCA
AAAAGATGCTCGATAAATACAGGGCACAGATCCATGGCATGGTCCACTGC
TCCGGCGGTGCCCAAACGAAAATTCTCCACTTTTTGAGCGAAGGGTTGCA
GGTGGTAAAAGACGCCATGTTCCCCATCCCACCTTTATTTGGCTTGATCC
AGGCAGAGAGTGGGACGGGCTGGAAGGAGATGTACCAGGAGCTGGGACCA
AATCCTCCCTCGCCTACATGTACTGGAAAGAAACTGGAGACTTAAGTGTT
TGGAAGGGTATTGCCCAAGATGCTCTGATCATGAACCTTGACGATCTTCT
CTGTGTAGGGGTGACGGACAACATCCTCCTTTCCTCGACCATTGGCCGAA
ACAAAAATTTGATCCCTGGAGAGGTGCTTGCGGCTATCATCAATGGTACA
CAGGAGCTATTGGATGATTTAGCGAAGTGGGGGGTGCAGATCACGAGCAC
GGGGGGGGAGACGGCGGATGTGGGGGATTTGGTGCGGACGATCATCGTCG
ATTCGACAGTAACGGCCAGGGTGAGGAGAAGCGACATTGTGGATAACGCC
AATATTCAAGCAGATGGCGGAAGAGTCCTCAGAGCGCTATGCGGGGCGGG
GCGTCTCATCAACAAAGTCGGAAGTCCATAGTGCCATCAAAAGAATAGAC
AAGGGCTTGTATCCCCAGGCCTTTTGCAAGGTCATACCAGACGTCTTGAC
TAACGACCCGGACTGGGCGTTGGTGATGCACGCGGACGGTGTTCAACATG
GGCCATCGCATGGAGCTCTATGTCCCTTCCGCTGAGGTTGCCGCCGGTCT
GATTGCTATCTCGGAGGAGCTGGGCGTTAATGCCCAAGTAATCGGCCGCG
TTGAGGCGGCATCGGAGGGGGTCAAGAGGCAAGTCACCATCTCGGGGCCG
CATGGTGTGTTTACCTATGTGTAGGAGACCTCATAGTTGGCCTCTCGTCC
TCCGGGCAAGCCAAATACGAACACGCCTATAACGGTGGCATGGGCTCTAA
TGGCCTCACTTCTGCCCGACACGACGTTTTCAGCAAAATTCTCGCCGAAA
AATACCCGGAGTCCTTCGACCCCTTCCTCCCTCCGGCCCTCGTTTACAGC
GGCAGCAAAGCCCTGACGGACCCTGTGGAAGGGTCTCCATTGGACGCCGG
CAAGCTCGTCCTCAGCCCGACGCGGACGTACGCTCCTATCATCAAAAAGA
TGCTCGATAAATACAGGGCACAGATCCATGGCATGGTCCACTGCTCCGGC
GGTGCCCAAACGAAAATTCTCCACTTTTTGAGCGAAGGGTTGCAGGTGGT
AAAAGACGCCATGTTCCCCATCCCACCTTTATTTGGCTTGATCCAGGCAG
AGAGTGGGACGGGCTGGAAGGAGATGTACCAGGAGCTGGGACCAAATCCT
CCCTCGCCTACATGTACTGGAAAGAAACTGGAGACTTAAGTGTTTGGAAG
GGTATTGCCCAAGATGCTCTGATCATGAACCTTGACGATCTTCTCTGTGT
AGGGGTGACGGACAACATCCTCCTTTCCTCGACCATTGGCCGAAACAAAA
ATTTGATCCCTGGAGAGGTGCTTGCGGCTATCATCAATGGTACACAGGAG
CTATTGGATGATTTAGCGAAGTGGGGGGTGCAGATCACGAGCACGGGGGG
GGAGACGGCGGATGTGGGGGATTTGGTGCGGACGATCATCGTCGATTCGA
CAGTAACGGCCAGGGTGAGGAGAAGCGACATTGTGGATAACGCCAATATT
CAAGCAGATGGCGGAAGAGTCCTCAGAGCGCTATGCGGGGCGGGGCGTCT
CATCAACAAAGTCGGAAGTCCATAGTGCCATCAAAAGAATAGACAAGGGC
TTGTATCCCCAGGCCTTTTGCAAGGTCATACCAGACGTCTTGACTAACGA
CCCGGACTGGGCGTTGGTGATGCACGCGGACGGTGTTCAACATGGGCCAT
CGCATGGAGCTCTATGTCCCTTCCGCTGAGGTTGCCGCCGGTCTGATTGC
TATCTCGGAGGAGCTGGGCGTTAATGCCCAAGTAATCGGCCGCGTTGAGG
CGGCATCGGAGGGGGTCAAGAGGCAAGTCACCATCTCGGGGCCGCATGGT
GTGTTTACCTATGTGTAGGAGACCTCATAGTTGGCCTCTCGTCCTCCGGG
CAAGCCAAATACGAACACGCCTATAACGGTGGCATGGGCTCTAATGGCCT
CACTTCTGCCCGACACGACGTTTTCAGCAAAATTCTCGCCGAAAAATACC
CGGAGTCCTTCGACCCCTTCCTCCCTCCGGCCCTCGTTTACAGCGGCAGC
AAAGCCCTGACGGACCCTGTGGAAGGGTCTCCATTGGACGCCGGCAAGCT
CGTCCTCAGCCCGACGCGGACGTACGCTCCTATCATCAAAAAGATGCTCG
ATAAATACAGGGCACAGATCCATGGCATGGTCCACTGCTCCGGCGGTGCC
CAAACGAAAATTCTCCACTTTTTGAGCGAAGGGTTGCAGGTGGTAAAAGA
CGCCATGTTCCCCATCCCACCTTTATTTGGCTTGATCCAGGCAGAGAGTG
GGACGGGCTGGAAGGAGATGTACCAGGAGCTGGGACCAAATCCTCCCTCG
CCTACATGTACTGGAAAGAAACTGGAGACTTAAGTGTTTGGAAGGGTATT
GCCCAAGATGCTCTGATCATGAACCTTGACGATCTTCTCTGTGTAGGGGT
GACGGACAACATCCTCCTTTCCTCGACCATTGGCCGAAACAAAAATTTGA
TCCCTGGAGAGGTGCTTGCGGCTATCATCAATGGTACACAGGAGCTATTG
GATGATTTAGCGAAGTGGGGGGTGCAGATCACGAGCACGGGGGGGGAGAC
GGCGGATGTGGGGGATTTGGTGCGGACGATCATCGTCGATTCGACAGTAA
CGGCCAGGGTGAGGAGAAGCGACATTGTGGATAACGCCAATATTCAAGCA
GATGGCGGAAGAGTCCTCAGAGCGCTATGCGGGGCGGGGCGTCTCATCAA
CAAAGTCGGAAGTCCATAGTGCCATCAAAAGAATAGACAAGGGCTTGTAT
CCCCAGGCCTTTTGCAAGGTCATACCAGACGTCTTGACTAACGACCCGGA
CTGGGCGTTGGTGATGCACGCGGACG back to top
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