jgi.p|Nanoce1779_2|576483, mRNA_186 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576483
Unique Name	mRNA_186
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1510
Alignment location	scaffold_3:471457..473178 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	576569
Track	FilteredModels2
ProteinId	576483

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:471457..473178 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576483	gene_186	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576483	mRNA_186-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_186	CDS_186	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:471457..473178+
coding sequence from alignment at scaffold_3:471457..473178+

mRNA sequence

>mRNA_186 ID=mRNA_186|Name=jgi.p|Nanoce1779_2|576483|organism=Nannochloropsis oceanica|type=mRNA|length=1510bp
GAAGCATAGGTGGGATAATAAGGGGGAGGCAACATTCAACCCCGAGACCA
CCGTCCTGGACACGTGTAACGACATGAATCATGTCAAGTACCAGTCGGAA
GGGTTCCAAACGGTTGAGGCCGAGGGGGAGGTCATTTTCACCTATGATGT
TGAGTGGAAGGAGTCGGACGTGCCCTGGTCCCACAGGTGGGATGTTTATT
TTACTGGCAACCCTGACGATGAGATCCACTATTTCTCCATCGTTAATTCA
CTAATGATTGTCCTGTTCCTCACGGGTGTTGTAGCGATGATCATGCTCCG
GACATTGCGCCGCGACATCAGCAATTACAATGAGATGCAAACCTTGGAGG
AGGCCCAGGAGGAGAGTGGTTGGAAGCTCGTGCACGGAGACGTCTTCCGC
CCACCCCAAACCTCGCCCATGCTCCTCGCGGTTCTCGCCGGCTCGGGCGC
CCAGCTCCTGGCCATGGCGACAGCCACCCTGACTTTCGCTCTGTTGGGAT
TCATGTCTCCGGCGAACCGCGGGGGGCTCCTGACCTCCCTCCTCCTCCTC
TTCGTGTTCATGGGCTCGGTAGCTGGATACTCCTCTGCAAGGCTCTACAA
GCTTTTCGGAGGAAAGGACTGGCGGCGAAACACCATTTTGACGGCAACCT
TGTTTCCGGGGGTGATGTTTGCGATGTTTTCCGTGTTGAATGTTGTGGCG
ATGGTTGAGAACTCCTCGACGGCCGTGCCCTTTGTCTGGGTGCTCTGCCT
GTTGGTCCTCTGGTTAGGTGTGTCGAGCCCTCTTGTGTTCGTGGGGTCTT
ACTTCGGCTTTAAGAAAGACGCATTGGAGGTGCCGGTGCGGACGAACCAG
ATAGCACGGCATGTCCCTGAGCAGATGTGGTATACACGCCCGCTCTTCTC
GATTGCCCTTGGGGGGATTTTGCCGTTCGGCGCTGTGTGCATTGAGCTAT
TTTTCATTATGTCTGCTTTGTGGTTGCATCAGATTTATTACGTGTTTGGG
TTTCTCATGTGCGTATTTTTCATCTTAGTGGCGACATGCGCAGAGATTAC
AATCGTCATGACGTACTTCCAGCTATGCAATGAGGATTATCGGTGGTGGT
GGCGTTCATTCCTCTCTTCAGGCTCGGCAGCAATGTACCTGTTCGTGTAT
TCCATTTGGTATTTCGAGAGCAAGCTTCACATTGATGCTGCTGTTTCAAT
CTTCATCTACTTCACATACATGGGCATGATCTCCATGGCATTTTCCCTCA
TGACTGGCGCAATCGGTCTTTTCTCCTGTTTATGGTTTACCCGGAAGATA
TACGGGGCTATCAAGGTTGATTAATCAGGCGTAGAGGAGGGAGAAGGGAA
GATGGGAGGATGAGAAAAAGAGAGAAATCTACACAGGCGCTCACGTAGCG
AGAGAAGAATACGTACCCGAAGACGCGGGGGCCGAACGGAGCCCCCCCCC
TCCAAGTCCAACCTCGATCAAAAATAATACCAACGAACGACGGCACAAGA
GTGAATCAGG

protein sequence of jgi.p|Nanoce1779_2|576483

>mRNA_186-protein ID=mRNA_186-protein|Name=jgi.p|Nanoce1779_2|576483|organism=Nannochloropsis oceanica|type=polypeptide|length=417bp
MNHVKYQSEGFQTVEAEGEVIFTYDVEWKESDVPWSHRWDVYFTGNPDDE
IHYFSIVNSLMIVLFLTGVVAMIMLRTLRRDISNYNEMQTLEEAQEESGW
KLVHGDVFRPPQTSPMLLAVLAGSGAQLLAMATATLTFALLGFMSPANRG
GLLTSLLLLFVFMGSVAGYSSARLYKLFGGKDWRRNTILTATLFPGVMFA
MFSVLNVVAMVENSSTAVPFVWVLCLLVLWLGVSSPLVFVGSYFGFKKDA
LEVPVRTNQIARHVPEQMWYTRPLFSIALGGILPFGAVCIELFFIMSALW
LHQIYYVFGFLMCVFFILVATCAEITIVMTYFQLCNEDYRWWWRSFLSSG
SAAMYLFVYSIWYFESKLHIDAAVSIFIYFTYMGMISMAFSLMTGAIGLF
SCLWFTRKIYGAIKVD*

mRNA from alignment at scaffold_3:471457..473178+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_186 ID=mRNA_186|Name=jgi.p|Nanoce1779_2|576483|organism=Nannochloropsis oceanica|type=mRNA|length=1722bp|location=Sequence derived from alignment at scaffold_3:471457..473178+ (Nannochloropsis oceanica)
GAAGCATAGGTGGGATAATAAGGGGGAGGTGAGTTTTTGGGTTGGGGTCG
AAGGGGAGGAGGGAGGAGGGGAGCGAAGGGCCTAGACAGAGCCAGGAATA
TACTGATGCTTCGCTCTTGTTCGAATAAGCAAGCTTCTATCCCTGCTATC
GCGGTTTTCCAAACCTCTATAAAGAAAACATTCATCCCAACTTACCCTAT
TTCCTCCATTCCTCTATCCCTCCCTTGCCTCCCCCCTCAGGCAACATTCA
ACCCCGAGACCACCGTCCTGGACACGTGTAACGACATGAATCATGTCAAG
TACCAGTCGGAAGGGTTCCAAACGGTTGAGGCCGAGGGGGAGGTCATTTT
CACCTATGATGTTGAGTGGAAGGAGTCGGACGTGCCCTGGTCCCACAGGT
GGGATGTTTATTTTACTGGCAACCCTGACGATGAGATCCACTATTTCTCC
ATCGTTAATTCACTAATGATTGTCCTGTTCCTCACGGGTGTTGTAGCGAT
GATCATGCTCCGGACATTGCGCCGCGACATCAGCAATTACAATGAGATGC
AAACCTTGGAGGAGGCCCAGGAGGAGAGTGGTTGGAAGCTCGTGCACGGA
GACGTCTTCCGCCCACCCCAAACCTCGCCCATGCTCCTCGCGGTTCTCGC
CGGCTCGGGCGCCCAGCTCCTGGCCATGGCGACAGCCACCCTGACTTTCG
CTCTGTTGGGATTCATGTCTCCGGCGAACCGCGGGGGGCTCCTGACCTCC
CTCCTCCTCCTCTTCGTGTTCATGGGCTCGGTAGCTGGATACTCCTCTGC
AAGGCTCTACAAGCTTTTCGGAGGAAAGGACTGGCGGCGAAACACCATTT
TGACGGCAACCTTGTTTCCGGGGGTGATGTTTGCGATGTTTTCCGTGTTG
AATGTTGTGGCGATGGTTGAGAACTCCTCGACGGCCGTGCCCTTTGTCTG
GGTGCTCTGCCTGTTGGTCCTCTGGTTAGGTGTGTCGAGCCCTCTTGTGT
TCGTGGGGTCTTACTTCGGCTTTAAGAAAGACGCATTGGAGGTGCCGGTG
CGGACGAACCAGATAGCACGGCATGTCCCTGAGCAGATGTGGTATACACG
CCCGCTCTTCTCGATTGCCCTTGGGGGGATTTTGCCGTTCGGCGCTGTGT
GCATTGAGCTATTTTTCATTATGTCTGCTTTGTGGTTGCATCAGATTTAT
TACGTGTTTGGGTTTCTCATGTGCGTATTTTTCATCTTAGTGGCGACATG
CGCAGAGATTACAATCGTCATGACGTACTTCCAGCTATGCAATGAGGATT
ATCGGTGGTGGTGGCGTTCATTCCTCTCTTCAGGCTCGGCAGCAATGTAC
CTGTTCGTGTATTCCATTTGGTATTTCGAGAGCAAGCTTCACATTGATGC
TGCTGTTTCAATCTTCATCTACTTCACATACATGGGCATGATCTCCATGG
CATTTTCCCTCATGACTGGCGCAATCGGTCTTTTCTCCTGTTTATGGTTT
ACCCGGAAGATATACGGGGCTATCAAGGTTGATTAATCAGGCGTAGAGGA
GGGAGAAGGGAAGATGGGAGGATGAGAAAAAGAGAGAAATCTACACAGGC
GCTCACGTAGCGAGAGAAGAATACGTACCCGAAGACGCGGGGGCCGAACG
GAGCCCCCCCCCTCCAAGTCCAACCTCGATCAAAAATAATACCAACGAAC
GACGGCACAAGAGTGAATCAGG

Coding sequence (CDS) from alignment at scaffold_3:471457..473178+

>mRNA_186 ID=mRNA_186|Name=jgi.p|Nanoce1779_2|576483|organism=Nannochloropsis oceanica|type=CDS|length=1251bp|location=Sequence derived from alignment at scaffold_3:471457..473178+ (Nannochloropsis oceanica)
ATGAATCATGTCAAGTACCAGTCGGAAGGGTTCCAAACGGTTGAGGCCGA
GGGGGAGGTCATTTTCACCTATGATGTTGAGTGGAAGGAGTCGGACGTGC
CCTGGTCCCACAGGTGGGATGTTTATTTTACTGGCAACCCTGACGATGAG
ATCCACTATTTCTCCATCGTTAATTCACTAATGATTGTCCTGTTCCTCAC
GGGTGTTGTAGCGATGATCATGCTCCGGACATTGCGCCGCGACATCAGCA
ATTACAATGAGATGCAAACCTTGGAGGAGGCCCAGGAGGAGAGTGGTTGG
AAGCTCGTGCACGGAGACGTCTTCCGCCCACCCCAAACCTCGCCCATGCT
CCTCGCGGTTCTCGCCGGCTCGGGCGCCCAGCTCCTGGCCATGGCGACAG
CCACCCTGACTTTCGCTCTGTTGGGATTCATGTCTCCGGCGAACCGCGGG
GGGCTCCTGACCTCCCTCCTCCTCCTCTTCGTGTTCATGGGCTCGGTAGC
TGGATACTCCTCTGCAAGGCTCTACAAGCTTTTCGGAGGAAAGGACTGGC
GGCGAAACACCATTTTGACGGCAACCTTGTTTCCGGGGGTGATGTTTGCG
ATGTTTTCCGTGTTGAATGTTGTGGCGATGGTTGAGAACTCCTCGACGGC
CGTGCCCTTTGTCTGGGTGCTCTGCCTGTTGGTCCTCTGGTTAGGTGTGT
CGAGCCCTCTTGTGTTCGTGGGGTCTTACTTCGGCTTTAAGAAAGACGCA
TTGGAGGTGCCGGTGCGGACGAACCAGATAGCACGGCATGTCCCTGAGCA
GATGTGGTATACACGCCCGCTCTTCTCGATTGCCCTTGGGGGGATTTTGC
CGTTCGGCGCTGTGTGCATTGAGCTATTTTTCATTATGTCTGCTTTGTGG
TTGCATCAGATTTATTACGTGTTTGGGTTTCTCATGTGCGTATTTTTCAT
CTTAGTGGCGACATGCGCAGAGATTACAATCGTCATGACGTACTTCCAGC
TATGCAATGAGGATTATCGGTGGTGGTGGCGTTCATTCCTCTCTTCAGGC
TCGGCAGCAATGTACCTGTTCGTGTATTCCATTTGGTATTTCGAGAGCAA
GCTTCACATTGATGCTGCTGTTTCAATCTTCATCTACTTCACATACATGG
GCATGATCTCCATGGCATTTTCCCTCATGACTGGCGCAATCGGTCTTTTC
TCCTGTTTATGGTTTACCCGGAAGATATACGGGGCTATCAAGGTTGATTA
A

Synonyms

Publications