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Properties
| Property Name | Value |
|---|
| TranscriptId | 287378 |
| Track | FilteredModels2 |
| ProteinId | 287292 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_4 | supercontig | scaffold_4:202869..205752 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1859 ID=mRNA_1859|Name=jgi.p|Nanoce1779_2|287292|organism=Nannochloropsis oceanica|type=mRNA|length=1465bp
GCAAACCAATTGTGAGCGGCAATCACGCCGTACTGGATTAATTTCTCTCC
AATATCTACAAGCAAATACGTCTACGTCTCATGTTCCCACATACTCCCTT
CACAATCACTTTTTTGACTTTTGTTCTTCTTTTTCCAACTCAGTCATGGG
CTTGAATCCTTGCACGGCCATTATCTTGCCGATTTCCTCCTCTTCCTGCC
GCCGATTTCGCATGCACATCCACCAACCCAAGGAGGTGGAGACCCCCATG
CCCAACACTGCAAAGTCACAGGCGTTCATAATGGCCTCTGGTAGTTTGGG
GACGTGGGTAGTTGAGGGTGATCGGCCCTTCATAATACCACACACCATAA
CAGCCAAGCCCCGCCCTCCCCTAGTACTCGTGCCGCACAATAGATGCCAC
TGGGCAAGCGTCGCCCACTCTTCACTTTTGACCTGGAATGGCCCGCAACC
CAAGGCCGCGCGTCAACCCGCCACCAGCACAGGAAGCAAAATCATAACCT
TTTGTAGGGCTATTGACACCATGCTGGGTGGGGGCGTACAGCGAGGGCAA
TTGATGGAGATTGTGGGCATACCTGGAAGTGGGAAGACACAGGTGGGGAT
ACAGCTCGCGATTGACGCGCAGATTCCGCGGTCATTCCGGGGGGCGGGGG
GGAAGGCGGTGTTTATCGATACGGAAGGGGCTTTCATGGCCGAGCGTGCC
GCCGAGATGGGCCAAGCCCTTATCGACCATCTCCAACGCATCCTGGCCTC
CAATCAATGCAAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGGCGG
AGGACGTGGCGGGCTTGACCCTGAAGACGGTGTTGGGCAACGTGTGGGTG
CTTCGGTGTTTGAATGACGCAGAATTAATGCAGACACTGCAGCACTTGCC
TGCGTTCTTGGATAGTGAGCCGGAGGTGGTTCTTGTGGTGATAGACAGCA
TCGCCCTCCCCTTCCGACAGGATAAGATGTTCCAAACGGAGTCGGCAGTG
GCTAAAGCGCGAGTCGTGAACGTCATGGCCCGCGAATTGAATGCCCTTGC
CGAGGCGCGGAATGTGGCAGTAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGCAGGGTAGATTGGACCACTTCGCACATGTCCGCAAGCTCA
CGCAGTCACTACCTTCCCTCCCTCCCTCCCTCCCTCGCTCCCGCGTTCTT
TCTCTTTTTCACAGGTGGTGGTGACCAATCAAATGACGACCAAGGTCGAT
GACGCCCATTCAACTGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CCTTGCCCCAACCCTCGGCGAGTCCTGGGCCCCTGGTCCCGCCGTGCGCC
TGCTGCTATGGACGAACGACATGGGTCTCCGATGCGCCACCTTGCAGAAG
CACCCGGGACAGGCACATTCCACTGTGGCTTTTCGCGGTATGTAACCACT
GCTGGCTATCTCTCC back to topprotein sequence of jgi.p|Nanoce1779_2|287292 >mRNA_1859-protein ID=mRNA_1859-protein|Name=jgi.p|Nanoce1779_2|287292|organism=Nannochloropsis oceanica|type=polypeptide|length=369bp
MGLNPCTAIILPISSSSCRRFRMHIHQPKEVETPMPNTAKSQAFIMASGS
LGTWVVEGDRPFIIPHTITAKPRPPLVLVPHNRCHWASVAHSSLLTWNGP
QPKAARQPATSTGSKIITFCRAIDTMLGGGVQRGQLMEIVGIPGSGKTQV
GIQLAIDAQIPRSFRGAGGKAVFIDTEGAFMAERAAEMGQALIDHLQRIL
ASNQCKQQQQQQQQQQQAEDVAGLTLKTVLGNVWVLRCLNDAELMQTLQH
LPAFLDSEPEVVLVVIDSIALPFRQDKMFQTESAVAKARVVNVMARELNA
LAEARNVAVGREGGREGGREGGRVDWTTSHMSASSRSHYLPSLPPSLAPA
FFLFFTGGGDQSNDDQGR* back to topmRNA from alignment at scaffold_4:202869..205752+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1859 ID=mRNA_1859|Name=jgi.p|Nanoce1779_2|287292|organism=Nannochloropsis oceanica|type=mRNA|length=2884bp|location=Sequence derived from alignment at scaffold_4:202869..205752+ (Nannochloropsis oceanica)
GCAAACCAATTGTGAGCGGCAATCACGCCGTACTGGATTAATTTCTCTCC
AATATCTACAAGCAAATACGTCTACGTCTCATGTTCCCACATACTCCCTT
CACAATCACTTTTTTGACTTTTGTTCTTCTTTTTCCAACTCAGTCATGGG
CTTGAATCCTTGCACGGCCATTATCTTGCCGATTTCCTCCTCTTCCTGCC
GCCGATTTCGCATGCACATCCACCAACCCAAGGAGGTGGAGACCCCCATG
CCCAACACTGCAAAGTCACAGGCGTTCATAATGGCCTCTGGTAGTTTGGG
GACGTGGGTAGTTGAGGGTGATCGGGTGAGTGAGGGGTATTTGAGATGGA
AGCGGGAGGGTGTGGAGTGAGGGTTGAGTAGATTAAATCAACAGCCTTCG
GCTTGGCCGGCGTCTGTCCCGGTCTTTCCAAGGAAGAGAATAACACAACT
GCTGGACAATAAACATGACAATGGGGTGTTTTTTTTTGGAGGAGAGCCAT
GGCCTCGAGCAGCTGAGGTCTCGCCTCACTTTGTTCGATGCCCCCTCCCT
ACCCAACCGCTACTCCACTTTCACCCCCGATCAAAACGTACGTGGCGACG
CCCGATGAACGCGAAACTTGTGCAGACCTGCGGCCAGGCCACATGCAATA
CCCCACATGAGCGGGACCCGGAAGCAAGGCGCCGTCTCGATGGTGTTGGA
GAGCTTGGAGAGAAAGGAGGGTTCGGGGGAGGAGTTCGTGGAGGCGGATG
AGGCGGACGGGGAGTCCTGAACCGTGCTAGACATTGTAGTCTTGACGCTG
CTGTTGGCGCTGCTGTTGTTTTATTCCCTGTGTCTATATGCATGTGGTAC
AGAGAGTGTCATGCGCTGCTATTTGGTCATCGCCAAGAACCGCCGCTTTC
AACGTCATGCATTTCGCCTCCACTGCCTGTCCAAGCCCTTCATAATACCA
CACACCATAACAGCCAAGCCCCGCCCTCCCCTAGTACTCGTGCCGCACAA
TAGATGCCACTGGGCAAGCGTCGCCCACTCTTCACTTTTGACCTGGAATG
GCCCGCAACCCAAGGTAGGTCAAGCCCTACCCTCGTATCCCTGCTCCCTT
TTTCCTGGCATAAACCCAACCACCACCCACTACGTAGGTGCACTTCGTCG
TAAGGGCTTTCGCAAAGCAGGCGAGCTTCGGGAGGCCCTGCAAAAAGGGA
AAGGCGAAGATCACCCCATCCTCACTGCCTCCGATCTCGCCACCCGCGGT
ACGTCCCCTACTACCCCTCCTCCCTCCGCCCTTCCCGAATACTCCCTCAC
TTATTCCCTCCCTCACTGACAGCCTTCACGCCCACCACCTCCGACGTCGA
CCTAATCCGCACTGTCCTCTCCGAGGCGGACGAGTCTCTCAATACTCCTC
CTTCCTCCTCCCTCCCCCTCCCCACCTCGGCCCTGGACCTCTTAAAGGCC
GCGCGTCAACCCGCCACCAGCACAGGAAGCAAAATCATAACCTTTTGTAG
GGCTATTGACACCATGCTGGGTGGGGGCGTACAGCGAGGGCAATTGATGG
AGATTGTGGGCATACCTGGAAGTGGGAAGACACAGGTGGGGATACAGCTC
GCGATTGACGCGCAGATTCCGCGGTCATTCCGGGGGGCGGGGGGGAAGGC
GGTGTTTATCGGTGAGTCAGGAGGAGGAGGAAGTTAGAGAGGGAGGATGG
GGAGGATGACGCCGTTTTTTGCCAGATAGATGAAGCTGACTAAGTTTGAA
CGCTGTCTGGTCTCTCTCACCTTGATCCTCCGTCCCTCCCTCGCTCCCTC
CCCCCCTCCCTTCCTCCCTCCCTTATACTCCGTGTGTCCTAGATACGGAA
GGGGCTTTCATGGCCGAGCGTGCCGCCGAGATGGGCCAAGCCCTTATCGA
CCATCTCCAACGCATCCTGGCCTCCAATCAATGCAAGCAGCAGCAGCAGC
AACAGCAGCAGCAGCAGCAGGCGGAGGACGTGGCGGGCTTGACCCTGAAG
ACGGTGTTGGGCAACGTGTGGGTGCTTCGGTGTTTGAATGACGCAGAATT
AATGCAGACACTGCAGCACTTGCCTGCGTTCTTGGATAGTGAGCCGGAGG
TGAGGGAGGGAGGGAAGGAAGGAAGGAGGGAGGAAAGGCGGGAGGGAAGG
AGGGGACAACAGGTGTCTCATGCTCATCCACACTCTCCCTCCCTCCCCCC
CCCTTTTCCCTCCTGACTCTTCCTCAGGTGGTTCTTGTGGTGATAGACAG
CATCGCCCTCCCCTTCCGACAGGATAAGATGTTCCAAACGGAGTCGGCAG
TGGCTAAAGCGCGAGTCGTGAACGTCATGGCCCGCGAATTGAATGCCCTT
GCCGAGGCGCGGAATGTGGCAGTAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGCAGGGTAGATTGGACCACTTCGCACATGTCCGCAAGCT
CACGCAGTCACTACCTTCCCTCCCTCCCTCCCTCCCTCGCTCCCGCGTTC
TTTCTCTTTTTCACAGGTGGTGGTGACCAATCAAATGACGACCAAGGTCG
ATGACGCCCATTCAACTGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCCTTGCCCCAACCCTCGGCGAGTCCTGGGCCCCTGGTCCCGCCGTGCG
CCTGCTGCTATGGACGAACGACGTACGTTGCCATGACTAAGAAAGGAGGG
GGGGGGGGGGAAGGGAAGGAACGAAGGGATACCTCAGTGGCCGTGGTCGG
ATAATGCACCCTTCCCCTCCCTCCCTCCCTCCCTCCCAGATGGGTCTCCG
ATGCGCCACCTTGCAGAAGCACCCGGGACAGGCACATTCCACTGTGGCTT
TTCGCGGTATGTAACCACTGCTGGCTATCTCTCC back to topCoding sequence (CDS) from alignment at scaffold_4:202869..205752+ >mRNA_1859 ID=mRNA_1859|Name=jgi.p|Nanoce1779_2|287292|organism=Nannochloropsis oceanica|type=CDS|length=5535bp|location=Sequence derived from alignment at scaffold_4:202869..205752+ (Nannochloropsis oceanica)
ATGGGCTTGAATCCTTGCACGGCCATTATCTTGCCGATTTCCTCCTCTTC
CTGCCGCCGATTTCGCATGCACATCCACCAACCCAAGGAGGTGGAGACCC
CCATGCCCAACACTGCAAAGTCACAGGCGTTCATAATGGCCTCTGGTAGT
TTGGGGACGTGGGTAGTTGAGGGTGATCGGCCCTTCATAATACCACACAC
CATAACAGCCAAGCCCCGCCCTCCCCTAGTACTCGTGCCGCACAATAGAT
GCCACTGGGCAAGCGTCGCCCACTCTTCACTTTTGACCTGGAATGGCCCG
CAACCCAAGGCCGCGCGTCAACCCGCCACCAGCACAGGAAGCAAAATCAT
AACCTTTTGTAGGGCTATTGACACCATGCTGGGTGGGGGCGTACAGCGAG
GGCAATTGATGGAGATTGTGGGCATACCTGGAAGTGGGAAGACACAGGTG
GGGATACAGCTCGCGATTGACGCGCAGATTCCGCGGTCATTCCGGGGGGC
GGGGGGGAAGGCGGTGTTTATCGATACGGAAGGGGCTTTCATGGCCGAGC
GTGCCGCCGAGATGGGCCAAGCCCTTATCGACCATCTCCAACGCATCCTG
GCCTCCAATCAATGCAAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCA
GGCGGAGGACGTGGCGGGCTTGACCCTGAAGACGGTGTTGGGCAACGTGT
GGGTGCTTCGGTGTTTGAATGACGCAGAATTAATGCAGACACTGCAGCAC
TTGCCTGCGTTCTTGGATAGTGAGCCGGAGGTGGTTCTTGTGGTGATAGA
CAGCATCGCCCTCCCCTTCCGACAGGATAAGATGTTCCAAACGGAGTCGG
CAGTGGCTAAAGCGCGAGTCGTGAACGTCATGGCCCGCGAATTGAATGCC
CTTGCCGAGGCGCGGAATGTGGCAGTAGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGCAGGGTAGATTGGACCACTTCGCACATGTCCGCAA
GCTCACGCAGTCACTACCTTCCCTCCCTCCCTCCCTCCCTCGCTCCCGCG
TTCTTTCTCTTTTTCACAGGTGGTGGTGACCAATCAAATGACGACCAAGG
TCGATGAATGGGCTTGAATCCTTGCACGGCCATTATCTTGCCGATTTCCT
CCTCTTCCTGCCGCCGATTTCGCATGCACATCCACCAACCCAAGGAGGTG
GAGACCCCCATGCCCAACACTGCAAAGTCACAGGCGTTCATAATGGCCTC
TGGTAGTTTGGGGACGTGGGTAGTTGAGGGTGATCGGCCCTTCATAATAC
CACACACCATAACAGCCAAGCCCCGCCCTCCCCTAGTACTCGTGCCGCAC
AATAGATGCCACTGGGCAAGCGTCGCCCACTCTTCACTTTTGACCTGGAA
TGGCCCGCAACCCAAGGCCGCGCGTCAACCCGCCACCAGCACAGGAAGCA
AAATCATAACCTTTTGTAGGGCTATTGACACCATGCTGGGTGGGGGCGTA
CAGCGAGGGCAATTGATGGAGATTGTGGGCATACCTGGAAGTGGGAAGAC
ACAGGTGGGGATACAGCTCGCGATTGACGCGCAGATTCCGCGGTCATTCC
GGGGGGCGGGGGGGAAGGCGGTGTTTATCGATACGGAAGGGGCTTTCATG
GCCGAGCGTGCCGCCGAGATGGGCCAAGCCCTTATCGACCATCTCCAACG
CATCCTGGCCTCCAATCAATGCAAGCAGCAGCAGCAGCAACAGCAGCAGC
AGCAGCAGGCGGAGGACGTGGCGGGCTTGACCCTGAAGACGGTGTTGGGC
AACGTGTGGGTGCTTCGGTGTTTGAATGACGCAGAATTAATGCAGACACT
GCAGCACTTGCCTGCGTTCTTGGATAGTGAGCCGGAGGTGGTTCTTGTGG
TGATAGACAGCATCGCCCTCCCCTTCCGACAGGATAAGATGTTCCAAACG
GAGTCGGCAGTGGCTAAAGCGCGAGTCGTGAACGTCATGGCCCGCGAATT
GAATGCCCTTGCCGAGGCGCGGAATGTGGCAGTAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGCAGGGTAGATTGGACCACTTCGCACATG
TCCGCAAGCTCACGCAGTCACTACCTTCCCTCCCTCCCTCCCTCCCTCGC
TCCCGCGTTCTTTCTCTTTTTCACAGGTGGTGGTGACCAATCAAATGACG
ACCAAGGTCGATGAATGGGCTTGAATCCTTGCACGGCCATTATCTTGCCG
ATTTCCTCCTCTTCCTGCCGCCGATTTCGCATGCACATCCACCAACCCAA
GGAGGTGGAGACCCCCATGCCCAACACTGCAAAGTCACAGGCGTTCATAA
TGGCCTCTGGTAGTTTGGGGACGTGGGTAGTTGAGGGTGATCGGCCCTTC
ATAATACCACACACCATAACAGCCAAGCCCCGCCCTCCCCTAGTACTCGT
GCCGCACAATAGATGCCACTGGGCAAGCGTCGCCCACTCTTCACTTTTGA
CCTGGAATGGCCCGCAACCCAAGGCCGCGCGTCAACCCGCCACCAGCACA
GGAAGCAAAATCATAACCTTTTGTAGGGCTATTGACACCATGCTGGGTGG
GGGCGTACAGCGAGGGCAATTGATGGAGATTGTGGGCATACCTGGAAGTG
GGAAGACACAGGTGGGGATACAGCTCGCGATTGACGCGCAGATTCCGCGG
TCATTCCGGGGGGCGGGGGGGAAGGCGGTGTTTATCGATACGGAAGGGGC
TTTCATGGCCGAGCGTGCCGCCGAGATGGGCCAAGCCCTTATCGACCATC
TCCAACGCATCCTGGCCTCCAATCAATGCAAGCAGCAGCAGCAGCAACAG
CAGCAGCAGCAGCAGGCGGAGGACGTGGCGGGCTTGACCCTGAAGACGGT
GTTGGGCAACGTGTGGGTGCTTCGGTGTTTGAATGACGCAGAATTAATGC
AGACACTGCAGCACTTGCCTGCGTTCTTGGATAGTGAGCCGGAGGTGGTT
CTTGTGGTGATAGACAGCATCGCCCTCCCCTTCCGACAGGATAAGATGTT
CCAAACGGAGTCGGCAGTGGCTAAAGCGCGAGTCGTGAACGTCATGGCCC
GCGAATTGAATGCCCTTGCCGAGGCGCGGAATGTGGCAGTAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGCAGGGTAGATTGGACCACTTC
GCACATGTCCGCAAGCTCACGCAGTCACTACCTTCCCTCCCTCCCTCCCT
CCCTCGCTCCCGCGTTCTTTCTCTTTTTCACAGGTGGTGGTGACCAATCA
AATGACGACCAAGGTCGATGAATGGGCTTGAATCCTTGCACGGCCATTAT
CTTGCCGATTTCCTCCTCTTCCTGCCGCCGATTTCGCATGCACATCCACC
AACCCAAGGAGGTGGAGACCCCCATGCCCAACACTGCAAAGTCACAGGCG
TTCATAATGGCCTCTGGTAGTTTGGGGACGTGGGTAGTTGAGGGTGATCG
GCCCTTCATAATACCACACACCATAACAGCCAAGCCCCGCCCTCCCCTAG
TACTCGTGCCGCACAATAGATGCCACTGGGCAAGCGTCGCCCACTCTTCA
CTTTTGACCTGGAATGGCCCGCAACCCAAGGCCGCGCGTCAACCCGCCAC
CAGCACAGGAAGCAAAATCATAACCTTTTGTAGGGCTATTGACACCATGC
TGGGTGGGGGCGTACAGCGAGGGCAATTGATGGAGATTGTGGGCATACCT
GGAAGTGGGAAGACACAGGTGGGGATACAGCTCGCGATTGACGCGCAGAT
TCCGCGGTCATTCCGGGGGGCGGGGGGGAAGGCGGTGTTTATCGATACGG
AAGGGGCTTTCATGGCCGAGCGTGCCGCCGAGATGGGCCAAGCCCTTATC
GACCATCTCCAACGCATCCTGGCCTCCAATCAATGCAAGCAGCAGCAGCA
GCAACAGCAGCAGCAGCAGCAGGCGGAGGACGTGGCGGGCTTGACCCTGA
AGACGGTGTTGGGCAACGTGTGGGTGCTTCGGTGTTTGAATGACGCAGAA
TTAATGCAGACACTGCAGCACTTGCCTGCGTTCTTGGATAGTGAGCCGGA
GGTGGTTCTTGTGGTGATAGACAGCATCGCCCTCCCCTTCCGACAGGATA
AGATGTTCCAAACGGAGTCGGCAGTGGCTAAAGCGCGAGTCGTGAACGTC
ATGGCCCGCGAATTGAATGCCCTTGCCGAGGCGCGGAATGTGGCAGTAGG
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGCAGGGTAGATTGGA
CCACTTCGCACATGTCCGCAAGCTCACGCAGTCACTACCTTCCCTCCCTC
CCTCCCTCCCTCGCTCCCGCGTTCTTTCTCTTTTTCACAGGTGGTGGTGA
CCAATCAAATGACGACCAAGGTCGATGAATGGGCTTGAATCCTTGCACGG
CCATTATCTTGCCGATTTCCTCCTCTTCCTGCCGCCGATTTCGCATGCAC
ATCCACCAACCCAAGGAGGTGGAGACCCCCATGCCCAACACTGCAAAGTC
ACAGGCGTTCATAATGGCCTCTGGTAGTTTGGGGACGTGGGTAGTTGAGG
GTGATCGGCCCTTCATAATACCACACACCATAACAGCCAAGCCCCGCCCT
CCCCTAGTACTCGTGCCGCACAATAGATGCCACTGGGCAAGCGTCGCCCA
CTCTTCACTTTTGACCTGGAATGGCCCGCAACCCAAGGCCGCGCGTCAAC
CCGCCACCAGCACAGGAAGCAAAATCATAACCTTTTGTAGGGCTATTGAC
ACCATGCTGGGTGGGGGCGTACAGCGAGGGCAATTGATGGAGATTGTGGG
CATACCTGGAAGTGGGAAGACACAGGTGGGGATACAGCTCGCGATTGACG
CGCAGATTCCGCGGTCATTCCGGGGGGCGGGGGGGAAGGCGGTGTTTATC
GATACGGAAGGGGCTTTCATGGCCGAGCGTGCCGCCGAGATGGGCCAAGC
CCTTATCGACCATCTCCAACGCATCCTGGCCTCCAATCAATGCAAGCAGC
AGCAGCAGCAACAGCAGCAGCAGCAGCAGGCGGAGGACGTGGCGGGCTTG
ACCCTGAAGACGGTGTTGGGCAACGTGTGGGTGCTTCGGTGTTTGAATGA
CGCAGAATTAATGCAGACACTGCAGCACTTGCCTGCGTTCTTGGATAGTG
AGCCGGAGGTGGTTCTTGTGGTGATAGACAGCATCGCCCTCCCCTTCCGA
CAGGATAAGATGTTCCAAACGGAGTCGGCAGTGGCTAAAGCGCGAGTCGT
GAACGTCATGGCCCGCGAATTGAATGCCCTTGCCGAGGCGCGGAATGTGG
CAGTAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGCAGGGTA
GATTGGACCACTTCGCACATGTCCGCAAGCTCACGCAGTCACTACCTTCC
CTCCCTCCCTCCCTCCCTCGCTCCCGCGTTCTTTCTCTTTTTCACAGGTG
GTGGTGACCAATCAAATGACGACCAAGGTCGATGA back to top
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