jgi.p|Nanoce1779_2|628053, mRNA_1852 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|628053
Unique Name	mRNA_1852
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2667
Alignment location	scaffold_4:178958..181960 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	628139
Track	FilteredModels2
ProteinId	628053

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:178958..181960 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|628053	gene_1852	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|628053	mRNA_1852-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1852	CDS_1852	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:178958..181960+
coding sequence from alignment at scaffold_4:178958..181960+

mRNA sequence

>mRNA_1852 ID=mRNA_1852|Name=jgi.p|Nanoce1779_2|628053|organism=Nannochloropsis oceanica|type=mRNA|length=2667bp
ATCAGGGGCTGTTGTCTGTTCGTTTGTATAGTACTTGCCCTTCCTGTCCG
CAATATATACTCCTACAGGCCTGCACTTCAAGCATTGTCTCTGCGTGATC
ATCTTACATAGGATATTGGCTATAGCGTGGAAGCATTGGAAGGTCAGTTT
GGCCATTATCAAGCATTTACGGAAGAGAGCGGTGGTGACGGACAATTTTA
ATGCTGCGCTTCCGAAGGGTTGTTGATGATTTGCCCACCACTGCGACTGT
CGGACATAGACAGTGCGGGGGCATGATCACTGCTGACAATATGACTGTAT
GCAGAGCAACTGGCTTAACTATCCTCAGGGGTGCCTTGTGCCAACGAGAC
TTGTCCCTCTTTTATGGGGTTGCACGCTGCCCCATCTTGTCTGAAGGGAT
ACACTCCTCCCCACATGCACCGGACACTACCACCATTACACGGCTACGAT
CACGGCAACATACACCTCCGGTCTTCGCTTCATCCACATGCTGCGAACGT
GCCACGTGCCTACATGTGGTGTCGCCCTGTGCTGCTGTTTGCGCTGCTGT
TGTGCCCGGGGAGGTATTAGCACCTGGGGCCTCTTACGCGCCATGCTCAT
TTCCCTGACGTGACAGCTTACTTTTAAGCGCCAATTTTCGACAGTAGTCA
CAATGTTATTGTGTTACTCACTATAGGTACTTGGCGGAAGACCTACTCAT
AGTGTGTCCTGTACTGTTGCGTTTTCTTCCTTGCATTAACCCTCCCATCA
CGCCCCATTTTTCCCTCCATCCCCCCATTCCACATGAACAGCCAACACTC
TCCACCTTACCACCACCCAAGCCAAACAAATGTCCGACACGATTAACACC
ATTATCAACGCGGTCAAGGAGATGGTCAACGACATGGGTGACAAGGTAAC
GACTGCCGTCAAGGAGTCCCTCCACGTGCCTGAGAATTTGGGGCCCCTCG
TGACAACCCTCAAGGACCTCGTCAGCACCGGCAAGAAGTTCGCCGCCGGC
GAAGGCAGCAGTGACGAACTCGCAGGCCTTACCACTCAACTAGGCCAATT
TTCCACGATGGTCGACACACTAGATGATGGCCCTTTGAAAAAAATGGTGC
TGGCGCTCCGTGATCAGGCCATGGGACAGCTGAAAGATGTGAAGGGCGCG
GAAAAGATCATGAAGATCCTTGCCGTTCTAGGGACCGACTCCAGCGCCAC
TGCCACCCCATCTGCCTCTCCCAGCCCTCCCGTTGTCGAGGCATCCATCG
ATACACCCGCTACTGCTGCTGCTCCTGCTCCTGCTGCTTCCGCTGCTGCT
GCTGCTGCTGCTCCTGCAACACCCGCGGTTGAGGAGGCAGTTGCTTCAAC
GCTTGCCGCGGCGGTGGCAGAAACTGTTCCGGCAGTAGCACCAACAGCCA
CGGCCACAGCTGCGATTATCCCTCCTACTCAGGCGATGACATAAGCCTGG
AGTGGGAAGGAAAGTCGGAAGGAAAGATGCGGGGGTTTCACTCTTCCTAT
GTCTCTTTTGGAGGAACCGAAGTGAGGAGGGTCAGGAAGAGAGGAAGCAA
ATTAGGAGCTTGGATCTGAAACGGAGGATTTGGATTAATTTTATTTATTT
ATTCATTTAAAAAAGGGTTGGGATTTCTGAGAAAGGAATTTAAGGTGCAT
ATGTGTATGTGAGTGTATGAGTATAATGTAAGGGTATGGAAGATACCTTC
ACGTGTGATAGTCTACTATTGATGGTAATGATGCTGTGTCTACAATGAAA
ACACCGACGCCGATGACGACGATACGAGGCGATGGTGGCAAGGAGGGGAA
GGAGGCCGAGGAAGATGTAGAGGAGGAGGAGAAGGAGGAGGAAGAGATGG
AGGAGGAGGAGAAAGGAGGAGAAGGGGCTTCGCGGCTGAAGCACGGTGAC
GTGATTTCACTCCTCCTGGTTGTATGTCTGTTTTCTTATAACTTCGTTGG
GCAGAATCGAGGGCGACATGCTCCTGGGTCTCGGTTGGAAGGTGGGGAGA
GGGCGGTGGGACTTGTATCGTCCGAAACAGGGAAAAGGGGAACTCGACAA
AGAATGAATGATCTTAAGGTAATGGTAATGATACTTTGTCAGTCACTTGT
AGTTCAGCTTTTCTCATCTCTGTGTACGTGATGCAGTTGGACCATGTGTC
GTGTGCGTTGCCCCCTCGCCCTCCTTCCCTCCCTCCCATGCTCCTAATGC
TCCTCCTCCTGCTGCCTCGCCCTTCCCCCTTCCTCCCTCCTGCTCCTGCT
CCTGCTCCTCTTTTTACTGTTGCCTTCCCGACTGTTTTTATATTTTTCGC
GCATCTTTTCTTCCGGGGGTTCCTCCACTTTTGGCCTGGCCCTTACGTAA
TGTTTATTGAACAGCCTTAATGTGTCTTCGATCATTTTTGTGCCCCTACA
CAATGTACACATATTCTAACTCCCTGCCCCCCCTCTTCCCTCAACACCTT
CAAGCTTGTATCCACGTCTTCCACAATACCTCTACCGTCTTCCCCACCCT
CGTCCTCCTTCTTACATCCTGTTCGCCCTCCTTTCCTCCCTATCTACCCC
CCTCCGTCGTCATCATCGGCCGAGGCAGAGACTTTCCCAATCCTCCAACA
AGCAGCACACTCCCCACCCCCACCCATCCAACCACACTCACCCACGTAGC
CTCCCCTCCCCCCTCCC

protein sequence of jgi.p|Nanoce1779_2|628053

>mRNA_1852-protein ID=mRNA_1852-protein|Name=jgi.p|Nanoce1779_2|628053|organism=Nannochloropsis oceanica|type=polypeptide|length=205bp
MSDTINTIINAVKEMVNDMGDKVTTAVKESLHVPENLGPLVTTLKDLVST
GKKFAAGEGSSDELAGLTTQLGQFSTMVDTLDDGPLKKMVLALRDQAMGQ
LKDVKGAEKIMKILAVLGTDSSATATPSASPSPPVVEASIDTPATAAAPA
PAASAAAAAAAPATPAVEEAVASTLAAAVAETVPAVAPTATATAAIIPPT
QAMT*

mRNA from alignment at scaffold_4:178958..181960+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1852 ID=mRNA_1852|Name=jgi.p|Nanoce1779_2|628053|organism=Nannochloropsis oceanica|type=mRNA|length=3003bp|location=Sequence derived from alignment at scaffold_4:178958..181960+ (Nannochloropsis oceanica)
ATCAGGGGCTGTTGTCTGTTCGTTTGTATAGTACTTGCCCTTCCTGTCCG
CAATATATACTCCTACAGGCCTGCACTTCAAGCATTGTCTCTGCGTGATC
ATCTTACATAGGATATTGGCTATAGCGTGGAAGCATTGGAAGGTCAGTTT
GGCCATTATCAAGCATTTACGGAAGAGAGCGGTGGTGACGGACAATTTTA
ATGCTGCGCTTCCGAAGGGTTGTTGATGATTTGCCCACCACTGCGACTGT
CGGACATAGACAGTGCGGGGGCATGATCACTGCTGACAATATGACTGTAT
GCAGAGCAACTGGCTTAACTATCCTCAGGGGTGCCTTGTGCCAACGAGAC
TTGTCCCTCTTTTATGGGGTTGCACGCTGCCCCATCTTGTCTGAAGGGAT
ACACTCCTCCCCACATGCACCGGACACTACCACCATTACACGGCTACGAT
CACGGCAACATACACCTCCGGTCTTCGCTTCATCCACATGCTGCGAACGT
GCCACGTGCCTACATGTGGTGTCGCCCTGTGCTGCTGTTTGCGCTGCTGT
TGTGCCCGGGGAGGTATTAGCACCTGGGGCCTCTTACGCGCCATGCTCAT
TTCCCTGACGTGACAGCTTACTTTTAAGCGCCAATTTTCGACAGTAGTCA
CAATGTTATTGTGTTACTCACTATAGGTACTTGGCGGAAGACCTACTCAT
AGTGTGTCCTGTACTGTTGCGTTTTCTTCCTTGCATTAACCCTCCCATCA
CGCCCCATTTTTCCCTCCATCCCCCCATTCCACATGAACAGCCAACACTC
TCCACCTTACCACCACCCAAGCCAAACAAATGTCCGACACGATTAACACC
ATTATCAACGCGGTCAAGGAGATGGTCAACGACATGGGTGACAAGGTAAC
GACTGCCGTCAAGGAGTCCCTCCACGTGCCTGAGAATTTGGGGCCCCTCG
TGACAACCCTCAAGGACCTCGTCAGCACCGGCAAGAAGGTTCGTTTTACC
ATGTATCCCCACTTCCTTACCTTCTTCTGTCTCTTCCTTTCTCTCGGGCC
ATTCAAAACCCGACTTCCCTTCCTCGTTCCCTCCCTCCCCTCCAGTTCGC
CGCCGGCGAAGGCAGCAGTGACGAACTCGCAGGCCTTACCACTCAACTAG
GCCAATTTTCCACGATGGTCGACACACTAGATGATGGCCCTTTGAAAAAA
ATGGTGCTGGCGCTCCGTGATCAGGCCATGGGACAGCTGAAAGATGTGAA
GGGCGCGGAAAAGGTCCGTGGCTAGTTGTTTTCCCCCTTCTTTTTTCTCT
TTGTTCCAATCCTCTCTCCTTTTGGTGATTCCCATTCCTCCTCTATGAAT
TTGTTTCAATCGAGGTAACCCACATCGATCCTCCCGTCCTTTCTCACATC
CTTTTCTATCTCCGTGCATCATTACTCCCAAGCCCATCATTATCACCCAC
GCCTACCTCCCTTCCCTCCTCTCTCCTCCCGGAACAAATCAGATCATGAA
GATCCTTGCCGTTCTAGGGACCGACTCCAGCGCCACTGCCACCCCATCTG
CCTCTCCCAGCCCTCCCGTTGTCGAGGCATCCATCGATACACCCGCTACT
GCTGCTGCTCCTGCTCCTGCTGCTTCCGCTGCTGCTGCTGCTGCTGCTCC
TGCAACACCCGCGGTTGAGGAGGCAGTTGCTTCAACGCTTGCCGCGGCGG
TGGCAGAAACTGTTCCGGCAGTAGCACCAACAGCCACGGCCACAGCTGCG
ATTATCCCTCCTACTCAGGCGATGACATAAGCCTGGAGTGGGAAGGAAAG
TCGGAAGGAAAGATGCGGGGGTTTCACTCTTCCTATGTCTCTTTTGGAGG
AACCGAAGTGAGGAGGGTCAGGAAGAGAGGAAGCAAATTAGGAGCTTGGA
TCTGAAACGGAGGATTTGGATTAATTTTATTTATTTATTCATTTAAAAAA
GGGTTGGGATTTCTGAGAAAGGAATTTAAGGTGCATATGTGTATGTGAGT
GTATGAGTATAATGTAAGGGTATGGAAGATACCTTCACGTGTGATAGTCT
ACTATTGATGGTAATGATGCTGTGTCTACAATGAAAACACCGACGCCGAT
GACGACGATACGAGGCGATGGTGGCAAGGAGGGGAAGGAGGCCGAGGAAG
ATGTAGAGGAGGAGGAGAAGGAGGAGGAAGAGATGGAGGAGGAGGAGAAA
GGAGGAGAAGGGGCTTCGCGGCTGAAGCACGGTGACGTGATTTCACTCCT
CCTGGTTGTATGTCTGTTTTCTTATAACTTCGTTGGGCAGAATCGAGGGC
GACATGCTCCTGGGTCTCGGTTGGAAGGTGGGGAGAGGGCGGTGGGACTT
GTATCGTCCGAAACAGGGAAAAGGGGAACTCGACAAAGAATGAATGATCT
TAAGGTAATGGTAATGATACTTTGTCAGTCACTTGTAGTTCAGCTTTTCT
CATCTCTGTGTACGTGATGCAGTTGGACCATGTGTCGTGTGCGTTGCCCC
CTCGCCCTCCTTCCCTCCCTCCCATGCTCCTAATGCTCCTCCTCCTGCTG
CCTCGCCCTTCCCCCTTCCTCCCTCCTGCTCCTGCTCCTGCTCCTCTTTT
TACTGTTGCCTTCCCGACTGTTTTTATATTTTTCGCGCATCTTTTCTTCC
GGGGGTTCCTCCACTTTTGGCCTGGCCCTTACGTAATGTTTATTGAACAG
CCTTAATGTGTCTTCGATCATTTTTGTGCCCCTACACAATGTACACATAT
TCTAACTCCCTGCCCCCCCTCTTCCCTCAACACCTTCAAGCTTGTATCCA
CGTCTTCCACAATACCTCTACCGTCTTCCCCACCCTCGTCCTCCTTCTTA
CATCCTGTTCGCCCTCCTTTCCTCCCTATCTACCCCCCTCCGTCGTCATC
ATCGGCCGAGGCAGAGACTTTCCCAATCCTCCAACAAGCAGCACACTCCC
CACCCCCACCCATCCAACCACACTCACCCACGTAGCCTCCCCTCCCCCCT
CCC

Coding sequence (CDS) from alignment at scaffold_4:178958..181960+

>mRNA_1852 ID=mRNA_1852|Name=jgi.p|Nanoce1779_2|628053|organism=Nannochloropsis oceanica|type=CDS|length=1845bp|location=Sequence derived from alignment at scaffold_4:178958..181960+ (Nannochloropsis oceanica)
ATGTCCGACACGATTAACACCATTATCAACGCGGTCAAGGAGATGGTCAA
CGACATGGGTGACAAGGTAACGACTGCCGTCAAGGAGTCCCTCCACGTGC
CTGAGAATTTGGGGCCCCTCGTGACAACCCTCAAGGACCTCGTCAGCACC
GGCAAGAAGTTCGCCGCCGGCGAAGGCAGCAGTGACGAACTCGCAGGCCT
TACCACTCAACTAGGCCAATTTTCCACGATGGTCGACACACTAGATGATG
GCCCTTTGAAAAAAATGGTGCTGGCGCTCCGTGATCAGGCCATGGGACAG
CTGAAAGATGTGAAGGGCGCGGAAAAGATCATGAAGATCCTTGCCGTTCT
AGGGACCGACTCCAGCGCCACTGCCACCCCATCTGCCTCTCCCAGCCCTC
CCGTTGTCGAGGCATCCATCGATACACCCGCTACTGCTGCTGCTCCTGCT
CCTGCTGCTTCCGCTGCTGCTGCTGCTGCTGCTCCTGCAACACCCGCGGT
TGAGGAGGCAGTTGCTTCAACGCTTGCCGCGGCGGTGGCAGAAACTGTTC
CGGCAGTAGCACCAACAGCCACGGCCACAGCTGCGATTATCCCTCCTACT
CAGGCGATGACATAAATGTCCGACACGATTAACACCATTATCAACGCGGT
CAAGGAGATGGTCAACGACATGGGTGACAAGGTAACGACTGCCGTCAAGG
AGTCCCTCCACGTGCCTGAGAATTTGGGGCCCCTCGTGACAACCCTCAAG
GACCTCGTCAGCACCGGCAAGAAGTTCGCCGCCGGCGAAGGCAGCAGTGA
CGAACTCGCAGGCCTTACCACTCAACTAGGCCAATTTTCCACGATGGTCG
ACACACTAGATGATGGCCCTTTGAAAAAAATGGTGCTGGCGCTCCGTGAT
CAGGCCATGGGACAGCTGAAAGATGTGAAGGGCGCGGAAAAGATCATGAA
GATCCTTGCCGTTCTAGGGACCGACTCCAGCGCCACTGCCACCCCATCTG
CCTCTCCCAGCCCTCCCGTTGTCGAGGCATCCATCGATACACCCGCTACT
GCTGCTGCTCCTGCTCCTGCTGCTTCCGCTGCTGCTGCTGCTGCTGCTCC
TGCAACACCCGCGGTTGAGGAGGCAGTTGCTTCAACGCTTGCCGCGGCGG
TGGCAGAAACTGTTCCGGCAGTAGCACCAACAGCCACGGCCACAGCTGCG
ATTATCCCTCCTACTCAGGCGATGACATAAATGTCCGACACGATTAACAC
CATTATCAACGCGGTCAAGGAGATGGTCAACGACATGGGTGACAAGGTAA
CGACTGCCGTCAAGGAGTCCCTCCACGTGCCTGAGAATTTGGGGCCCCTC
GTGACAACCCTCAAGGACCTCGTCAGCACCGGCAAGAAGTTCGCCGCCGG
CGAAGGCAGCAGTGACGAACTCGCAGGCCTTACCACTCAACTAGGCCAAT
TTTCCACGATGGTCGACACACTAGATGATGGCCCTTTGAAAAAAATGGTG
CTGGCGCTCCGTGATCAGGCCATGGGACAGCTGAAAGATGTGAAGGGCGC
GGAAAAGATCATGAAGATCCTTGCCGTTCTAGGGACCGACTCCAGCGCCA
CTGCCACCCCATCTGCCTCTCCCAGCCCTCCCGTTGTCGAGGCATCCATC
GATACACCCGCTACTGCTGCTGCTCCTGCTCCTGCTGCTTCCGCTGCTGC
TGCTGCTGCTGCTCCTGCAACACCCGCGGTTGAGGAGGCAGTTGCTTCAA
CGCTTGCCGCGGCGGTGGCAGAAACTGTTCCGGCAGTAGCACCAACAGCC
ACGGCCACAGCTGCGATTATCCCTCCTACTCAGGCGATGACATAA

Synonyms

Publications