jgi.p|Nanoce1779_2|286951, mRNA_1850 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|286951
Unique Name	mRNA_1850
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1319
Alignment location	scaffold_4:171915..173761 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	287037
Track	FilteredModels2
ProteinId	286951

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:171915..173761 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|286951	gene_1850	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|286951	mRNA_1850-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1850	CDS_1850	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:171915..173761+
coding sequence from alignment at scaffold_4:171915..173761+

mRNA sequence

>mRNA_1850 ID=mRNA_1850|Name=jgi.p|Nanoce1779_2|286951|organism=Nannochloropsis oceanica|type=mRNA|length=1319bp
GTCGGGGGAGGGAGGGTGAGGAAGGGGGAGATAGGGTGTGGGAAAGGTGA
GCGCGGAAAGTGACGCACGTGCAGACGGTATATTTCTCTTGCCGCTAATT
TCGGACGTCAATGAGTCAGGGTGTGAGAGGTGGAAGAAGCGAGAAGGATG
CTAACGAACAGAAAACAGAGAGAAAAGGAGGAAAGAAGCCAAGCTTCGCG
CCGCACTGGCGATCGCATTTTCAGGCTCAGAATTGAGCGGACCTCGCTTG
ATTTACGGGCGTCTTTTTAACGCTGGATAGGCAAGTGCAACAATTTGTAA
CGATTGCTGGACACCTATCCGTGGCATCTACATGGAAGTCTCTGACCGAA
GCGCCCCTCCTCCTTCTCTCGCCAAAGACGTTGCTCCAATTGTTCCGCAC
GTCTCCCAAACCGCCACCCCCGCGCCTTCCCCTTCCCCACCTCAGCCACG
TCGCGTCAATGAAGGGGGAGCAGGACAATGGTACCACTAACGTCCCTCCT
GCATCGCATGGCCGCCTCTTCCTTGGGACGGCGGGTTATTCGTACCCACA
CTGGCGGAAGAGCTTTTACCCTCACGGACTATCCCATGCCAAGGAGTTGC
AGTTTTACGCCCAGACGTTCAACGCGTGCGAGATAAACACCACCTTTTAT
GGCGTACCGAGCGAAGCAACAATCGCCACCTGGATTGCCCAAGTCCAGCC
CGTCAACCCAAACTTCAAATTCACGCTCAAGATGAAGAAAACCATCACCC
ACGGGGGGGAAGCCACCAGGAGCAGGAGCGCCAATACCAGCAGCAACACG
CCGACAGATGTCTCCCCCTCATCCTCTTCTCCACCTTCCTCCTTCTCCTC
CTCCTCTCTACTCAAAAAAGAGCAACACTCCCGCCCCCTGCATCCTGCCG
CTCTCGCGCACGAGCTTCCCCTTTTCTTCGATCGCGCCTCCCTCCTCCCT
CCCTCCCTTCGTGGCCCCATACTCTTTCAATTCCCCCCTTCGTTCACCCT
TGACCTCCTCTCCCTCCACCGCCTCGCCACTGCCCTCCATCCCTACACAT
CTCTTGTTTCCCCCTGTCCCTGGAAGGTCGCCTTCGAATTCCGTCATCCC
TCGTGGTTTTGCGCGGAGACGTACACCTTCCTTCACTCCCACGGGTGGAT
CCTCGTCCTCCATGCGCTCCCTCAAACCAAAGCTCTAAGCAAGGAGATCG
AGGAGCTGCCTTCTCCTTCGTGTGTCTACTTAAGGCTGCATGGACTGAAG
GAAGAGCATGCCTGGGATTACTCACGGGAGGAACTAGCGTTGTATGTGGA
CAAAGTGAAGAGATGGAGG

protein sequence of jgi.p|Nanoce1779_2|286951

>mRNA_1850-protein ID=mRNA_1850-protein|Name=jgi.p|Nanoce1779_2|286951|organism=Nannochloropsis oceanica|type=polypeptide|length=287bp
MKGEQDNGTTNVPPASHGRLFLGTAGYSYPHWRKSFYPHGLSHAKELQFY
AQTFNACEINTTFYGVPSEATIATWIAQVQPVNPNFKFTLKMKKTITHGG
EATRSRSANTSSNTPTDVSPSSSSPPSSFSSSSLLKKEQHSRPLHPAALA
HELPLFFDRASLLPPSLRGPILFQFPPSFTLDLLSLHRLATALHPYTSLV
SPCPWKVAFEFRHPSWFCAETYTFLHSHGWILVLHALPQTKALSKEIEEL
PSPSCVYLRLHGLKEEHAWDYSREELALYVDKVKRWR

mRNA from alignment at scaffold_4:171915..173761+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1850 ID=mRNA_1850|Name=jgi.p|Nanoce1779_2|286951|organism=Nannochloropsis oceanica|type=mRNA|length=1847bp|location=Sequence derived from alignment at scaffold_4:171915..173761+ (Nannochloropsis oceanica)
GTCGGGGGAGGGAGGGTGAGGAAGGGGGAGATAGGGTGTGGGAAAGGTGA
GCGCGGAAAGTGACGCACGTGCAGACGGTATATTTCTCTTGCCGCTAATT
TCGGACGTCAATGAGTCAGGGTGTGAGAGGTGGAAGAAGCGAGAAGGATG
CTAACGAACAGAAAACAGAGAGAAAAGGAGGAAAGAAGCCAAGCTTCGCG
CCGCACTGGCGATCGCATTTTCAGGCTCAGAATTGAGCGGACCTCGCTTG
ATTTACGGGCGTCTTTTTAACGCTGGATAGGCAAGTGCAACAATTTGTAA
CGATTGCTGGACACCTATCCGTGGCATCTACATGGAAGTCTCTGACCGAA
GCGCCCCTCCTCCTTCTCTCGCCAAAGACGTTGCTCCAATTGTTCCGCAC
GTCTCCCAAACCGCCACCCCCGCGCCTTCCCCTTCCCCACCTCAGCCACG
TCGCGTCAATGAAGGGGGAGCAGGACAATGGTACCACTAACGTCCCTCCT
GCATCGCATGGCCGCCTCTTCCTTGGGACGGCGGGTTATTCGTACCCACA
CTGGCGGAAGAGCTTTTACCCTCACGGTAAGTCTTTTTTGTGTGCTGAGC
CTTACGGGGAGGGAGCACATGTGCATACCCTCAAGCCTCTCCCTGCTCCT
TCTTTCACGTGCCCTGTGATACATCCGATAATTTGTGATTGTATGGAGAC
GACGTCGCATCATTCCCCCTTTTTTCCGCAACAAAACAAATAGGACTATC
CCATGCCAAGGAGTTGCAGTTTTACGCCCAGACGTTCAACGCGTGCGAGA
TAAACACCACCTTTTATGGTACGCGAGACTTAAAGCATTGAAGGGAGAGG
GTTGACTATTCATGAGAGTCTATAGTTGCTACTGGGGGAATAGGGAAAAG
AAGAGAGTCGAGAGGTAGAGAGAGGAGGAGGGACATAACAAGGAGAGAAG
AGTGCTTGCCACTTTAGTGCTACCACTGCCACTGTTCGCTGGTTTGGTGC
CTGATGTTTCATTCTCCTTCTCAATCCTTTTCTTGTCCCTCACTTAAATC
TCCCTCGTCCTGCAAGGCGTGCCAGGCACGATGTGAAGGAGCGACAAATG
AAAACACACTGAAGCAGGGGCCCGCACCAGCCGTCTCCTTACAATACACT
CTATTATTTACGTAAATCCATACGATCAGGCGTACCGAGCGAAGCAACAA
TCGCCACCTGGATTGCCCAAGTCCAGCCCGTCAACCCAAACTTCAAATTC
ACGCTCAAGATGAAGAAAACCATCACCCACGGGGGGGAAGCCACCAGGAG
CAGGAGCGCCAATACCAGCAGCAACACGCCGACAGATGTCTCCCCCTCAT
CCTCTTCTCCACCTTCCTCCTTCTCCTCCTCCTCTCTACTCAAAAAAGAG
CAACACTCCCGCCCCCTGCATCCTGCCGCTCTCGCGCACGAGCTTCCCCT
TTTCTTCGATCGCGCCTCCCTCCTCCCTCCCTCCCTTCGTGGCCCCATAC
TCTTTCAATTCCCCCCTTCGTTCACCCTTGACCTCCTCTCCCTCCACCGC
CTCGCCACTGCCCTCCATCCCTACACATCTCTTGTTTCCCCCTGTCCCTG
GAAGGTCGCCTTCGAATTCCGTCATCCCTCGTGGTTTTGCGCGGAGACGT
ACACCTTCCTTCACTCCCACGGGTGGATCCTCGTCCTCCATGCGCTCCCT
CAAACCAAAGCTCTAAGCAAGGAGATCGAGGAGCTGCCTTCTCCTTCGTG
TGTCTACTTAAGGCTGCATGGACTGAAGGAAGAGCATGCCTGGGATTACT
CACGGGAGGAACTAGCGTTGTATGTGGACAAAGTGAAGAGATGGAGG

Coding sequence (CDS) from alignment at scaffold_4:171915..173761+

>mRNA_1850 ID=mRNA_1850|Name=jgi.p|Nanoce1779_2|286951|organism=Nannochloropsis oceanica|type=CDS|length=2583bp|location=Sequence derived from alignment at scaffold_4:171915..173761+ (Nannochloropsis oceanica)
ATGAAGGGGGAGCAGGACAATGGTACCACTAACGTCCCTCCTGCATCGCA
TGGCCGCCTCTTCCTTGGGACGGCGGGTTATTCGTACCCACACTGGCGGA
AGAGCTTTTACCCTCACGGACTATCCCATGCCAAGGAGTTGCAGTTTTAC
GCCCAGACGTTCAACGCGTGCGAGATAAACACCACCTTTTATGGCGTACC
GAGCGAAGCAACAATCGCCACCTGGATTGCCCAAGTCCAGCCCGTCAACC
CAAACTTCAAATTCACGCTCAAGATGAAGAAAACCATCACCCACGGGGGG
GAAGCCACCAGGAGCAGGAGCGCCAATACCAGCAGCAACACGCCGACAGA
TGTCTCCCCCTCATCCTCTTCTCCACCTTCCTCCTTCTCCTCCTCCTCTC
TACTCAAAAAAGAGCAACACTCCCGCCCCCTGCATCCTGCCGCTCTCGCG
CACGAGCTTCCCCTTTTCTTCGATCGCGCCTCCCTCCTCCCTCCCTCCCT
TCGTGGCCCCATACTCTTTCAATTCCCCCCTTCGTTCACCCTTGACCTCC
TCTCCCTCCACCGCCTCGCCACTGCCCTCCATCCCTACACATCTCTTGTT
TCCCCCTGTCCCTGGAAGGTCGCCTTCGAATTCCGTCATCCCTCGTGGTT
TTGCGCGGAGACGTACACCTTCCTTCACTCCCACGGGTGGATCCTCGTCC
TCCATGCGCTCCCTCAAACCAAAGCTCTAAGCAAGGAGATCGAGGAGCTG
CCTTCTCCTTCGTGTGTCTACTTAAGGCTGCATGGACTGAAGGAAGAGCA
TGCCTGGGATTACTCACGGGAGGAACTAGCGTTGTATGTGGACAAAGTGA
AGAGATGGAGGATGAAGGGGGAGCAGGACAATGGTACCACTAACGTCCCT
CCTGCATCGCATGGCCGCCTCTTCCTTGGGACGGCGGGTTATTCGTACCC
ACACTGGCGGAAGAGCTTTTACCCTCACGGACTATCCCATGCCAAGGAGT
TGCAGTTTTACGCCCAGACGTTCAACGCGTGCGAGATAAACACCACCTTT
TATGGCGTACCGAGCGAAGCAACAATCGCCACCTGGATTGCCCAAGTCCA
GCCCGTCAACCCAAACTTCAAATTCACGCTCAAGATGAAGAAAACCATCA
CCCACGGGGGGGAAGCCACCAGGAGCAGGAGCGCCAATACCAGCAGCAAC
ACGCCGACAGATGTCTCCCCCTCATCCTCTTCTCCACCTTCCTCCTTCTC
CTCCTCCTCTCTACTCAAAAAAGAGCAACACTCCCGCCCCCTGCATCCTG
CCGCTCTCGCGCACGAGCTTCCCCTTTTCTTCGATCGCGCCTCCCTCCTC
CCTCCCTCCCTTCGTGGCCCCATACTCTTTCAATTCCCCCCTTCGTTCAC
CCTTGACCTCCTCTCCCTCCACCGCCTCGCCACTGCCCTCCATCCCTACA
CATCTCTTGTTTCCCCCTGTCCCTGGAAGGTCGCCTTCGAATTCCGTCAT
CCCTCGTGGTTTTGCGCGGAGACGTACACCTTCCTTCACTCCCACGGGTG
GATCCTCGTCCTCCATGCGCTCCCTCAAACCAAAGCTCTAAGCAAGGAGA
TCGAGGAGCTGCCTTCTCCTTCGTGTGTCTACTTAAGGCTGCATGGACTG
AAGGAAGAGCATGCCTGGGATTACTCACGGGAGGAACTAGCGTTGTATGT
GGACAAAGTGAAGAGATGGAGGATGAAGGGGGAGCAGGACAATGGTACCA
CTAACGTCCCTCCTGCATCGCATGGCCGCCTCTTCCTTGGGACGGCGGGT
TATTCGTACCCACACTGGCGGAAGAGCTTTTACCCTCACGGACTATCCCA
TGCCAAGGAGTTGCAGTTTTACGCCCAGACGTTCAACGCGTGCGAGATAA
ACACCACCTTTTATGGCGTACCGAGCGAAGCAACAATCGCCACCTGGATT
GCCCAAGTCCAGCCCGTCAACCCAAACTTCAAATTCACGCTCAAGATGAA
GAAAACCATCACCCACGGGGGGGAAGCCACCAGGAGCAGGAGCGCCAATA
CCAGCAGCAACACGCCGACAGATGTCTCCCCCTCATCCTCTTCTCCACCT
TCCTCCTTCTCCTCCTCCTCTCTACTCAAAAAAGAGCAACACTCCCGCCC
CCTGCATCCTGCCGCTCTCGCGCACGAGCTTCCCCTTTTCTTCGATCGCG
CCTCCCTCCTCCCTCCCTCCCTTCGTGGCCCCATACTCTTTCAATTCCCC
CCTTCGTTCACCCTTGACCTCCTCTCCCTCCACCGCCTCGCCACTGCCCT
CCATCCCTACACATCTCTTGTTTCCCCCTGTCCCTGGAAGGTCGCCTTCG
AATTCCGTCATCCCTCGTGGTTTTGCGCGGAGACGTACACCTTCCTTCAC
TCCCACGGGTGGATCCTCGTCCTCCATGCGCTCCCTCAAACCAAAGCTCT
AAGCAAGGAGATCGAGGAGCTGCCTTCTCCTTCGTGTGTCTACTTAAGGC
TGCATGGACTGAAGGAAGAGCATGCCTGGGATTACTCACGGGAGGAACTA
GCGTTGTATGTGGACAAAGTGAAGAGATGGAGG

Synonyms

Publications