jgi.p|Nanoce1779_2|578170, mRNA_1848 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|578170
Unique Name	mRNA_1848
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1635
Alignment location	scaffold_4:168863..170497 +

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Properties


Property Name	Value
TranscriptId	578256
Track	FilteredModels2
ProteinId	578170

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:168863..170497 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578170	gene_1848	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578170	mRNA_1848-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1848	CDS_1848	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:168863..170497+
coding sequence from alignment at scaffold_4:168863..170497+

mRNA sequence

>mRNA_1848 ID=mRNA_1848|Name=jgi.p|Nanoce1779_2|578170|organism=Nannochloropsis oceanica|type=mRNA|length=1635bp
AGGGCGCCGCATCCTGCAATCCAGTCGCTGGAACGCTTCGATTCGCTGCA
GATCGTCCCTGTGACAGAGTTAGCTCCCCGCCCATATCAGATGACAGACC
CCATAATCGCCCTCCCGGTCCGTGTAACTCGGAGCATGATGACCCGCACC
GCGACCAGTGTTGACGAGGAGGATGACAGCGGCATGACTTCCCCGACGTC
GACGATACAGGAGCGTCAGGAGCAGGAGAAAGCGGTAGCTCAACGGAGGG
GGGACGAACACGAACAACAGCTCGACGACCAGTGGCATGACATTCCGGAT
TCTCCCTCCGCAGCGGGCACCACCTCGGTGCAGACCACGCACACAGGCCT
GCGCAAAGCTCGGCGGAAGCTGAGTGTAGTAAGCGAGAATGTACTTGTCG
ATGGGATTCAAGACATTCACTTGGACGAAACGCTGAACGTAGGGGGAGAC
AAAGGTAGCGTGCTGCCGTGTCTGGTGAGTGCCTACGCGGGCAAGAGCCA
AAAGGGCTTTGCCCCATACCACAGCCGAAAAAAGAATCAGGACGCCTTGA
TTATGGCGGAGGAGCCGCATACCTCTACCCTCTTCTTTTGTGTCTTGGAT
GGCCACGGCGAGTTTGGGGAGCTCGTCTCAGGGTTTTTCCAAAGAGAACT
GGCCCGCAATTTGTTCGCGCACGATTGCTTCGAGCATGACCCACGCCGGG
CATTCGTCGAGGTTCTGACAGCACTGGAGAAGGCATTGCTGCGGGACACG
AAGGTTGATACAGATTTTTCGGGGACCACTATGTCGGCGGTGTTGCTAAG
GGGGGATCGCATGCTGGTATTTAACTGCGGCGACTCCCGCGTCACGGTCG
GAGTCAAGGAAGAGCCATCCACTCCAACGGCAGCAACATCAACAGCCGCA
GTTGCAAGGGAGGGTAACAACTCTTCCTCGTCCTCCATCTCCAAACCAAC
CCCCACCAAGATCTCCTCCTTCCTCTCCCGCCGGTCCCTCTCCCTCTCTT
CCTCAAAAGCTGCCACCGCTCCTCCCCTATTAAAAGCCACCGCGCTCTCG
ATCGACCACAAGCCAGACATTCCATCGGAAAAGGCGCGGATTTTGGCAGC
AGGCGGAAGGGTGTTTGCCGTCCGTTACGACGACGGAGTGGACGGGCCTC
AGAGGGTGTGGTTAGGCCACATCGACGCGCCTGGCTTGGCAATGTCAAGG
TCACTGGGGGATGCAGTAGCTCACTCAGTGGGAGTGAGCAGCGAGCCGGA
GGTGTTTGAATACACCCTGGATCCGAAAAAGGAAGTGTTTTTAATCTTGG
CCACGGACGGGTTGTGGGAGTTTTGTAGTGATGGGGAGGTGGTGACCATG
GTGGGGAGGGCCAGAGACCCACAGGATGCAGTGGAGGGGTTGATCAAAGA
GGCGACCGCTCGATGGTTGAGGGAAGAGCAGGTGGTAGATGACACAACGG
TGTGCGTGGCGTTTTTGGGGGATTGGAAGAAGTAGGAGGGAAGGAGGGAG
CAGGTTGAAAGGGAAGAGGGAAGAAAGTAAATCGAAGGACGACAGAGCTG
TATGAACAAAGAGGCAATCCTCTGCAGAAAAGGAGAGAAACGGAATGCGC
GAAGAGGGAGAGGGGAGGCGGAGGGGGAGGGAGAG

protein sequence of jgi.p|Nanoce1779_2|578170

>mRNA_1848-protein ID=mRNA_1848-protein|Name=jgi.p|Nanoce1779_2|578170|organism=Nannochloropsis oceanica|type=polypeptide|length=465bp
MTDPIIALPVRVTRSMMTRTATSVDEEDDSGMTSPTSTIQERQEQEKAVA
QRRGDEHEQQLDDQWHDIPDSPSAAGTTSVQTTHTGLRKARRKLSVVSEN
VLVDGIQDIHLDETLNVGGDKGSVLPCLVSAYAGKSQKGFAPYHSRKKNQ
DALIMAEEPHTSTLFFCVLDGHGEFGELVSGFFQRELARNLFAHDCFEHD
PRRAFVEVLTALEKALLRDTKVDTDFSGTTMSAVLLRGDRMLVFNCGDSR
VTVGVKEEPSTPTAATSTAAVAREGNNSSSSSISKPTPTKISSFLSRRSL
SLSSSKAATAPPLLKATALSIDHKPDIPSEKARILAAGGRVFAVRYDDGV
DGPQRVWLGHIDAPGLAMSRSLGDAVAHSVGVSSEPEVFEYTLDPKKEVF
LILATDGLWEFCSDGEVVTMVGRARDPQDAVEGLIKEATARWLREEQVVD
DTTVCVAFLGDWKK*

mRNA from alignment at scaffold_4:168863..170497+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1848 ID=mRNA_1848|Name=jgi.p|Nanoce1779_2|578170|organism=Nannochloropsis oceanica|type=mRNA|length=1635bp|location=Sequence derived from alignment at scaffold_4:168863..170497+ (Nannochloropsis oceanica)
AGGGCGCCGCATCCTGCAATCCAGTCGCTGGAACGCTTCGATTCGCTGCA
GATCGTCCCTGTGACAGAGTTAGCTCCCCGCCCATATCAGATGACAGACC
CCATAATCGCCCTCCCGGTCCGTGTAACTCGGAGCATGATGACCCGCACC
GCGACCAGTGTTGACGAGGAGGATGACAGCGGCATGACTTCCCCGACGTC
GACGATACAGGAGCGTCAGGAGCAGGAGAAAGCGGTAGCTCAACGGAGGG
GGGACGAACACGAACAACAGCTCGACGACCAGTGGCATGACATTCCGGAT
TCTCCCTCCGCAGCGGGCACCACCTCGGTGCAGACCACGCACACAGGCCT
GCGCAAAGCTCGGCGGAAGCTGAGTGTAGTAAGCGAGAATGTACTTGTCG
ATGGGATTCAAGACATTCACTTGGACGAAACGCTGAACGTAGGGGGAGAC
AAAGGTAGCGTGCTGCCGTGTCTGGTGAGTGCCTACGCGGGCAAGAGCCA
AAAGGGCTTTGCCCCATACCACAGCCGAAAAAAGAATCAGGACGCCTTGA
TTATGGCGGAGGAGCCGCATACCTCTACCCTCTTCTTTTGTGTCTTGGAT
GGCCACGGCGAGTTTGGGGAGCTCGTCTCAGGGTTTTTCCAAAGAGAACT
GGCCCGCAATTTGTTCGCGCACGATTGCTTCGAGCATGACCCACGCCGGG
CATTCGTCGAGGTTCTGACAGCACTGGAGAAGGCATTGCTGCGGGACACG
AAGGTTGATACAGATTTTTCGGGGACCACTATGTCGGCGGTGTTGCTAAG
GGGGGATCGCATGCTGGTATTTAACTGCGGCGACTCCCGCGTCACGGTCG
GAGTCAAGGAAGAGCCATCCACTCCAACGGCAGCAACATCAACAGCCGCA
GTTGCAAGGGAGGGTAACAACTCTTCCTCGTCCTCCATCTCCAAACCAAC
CCCCACCAAGATCTCCTCCTTCCTCTCCCGCCGGTCCCTCTCCCTCTCTT
CCTCAAAAGCTGCCACCGCTCCTCCCCTATTAAAAGCCACCGCGCTCTCG
ATCGACCACAAGCCAGACATTCCATCGGAAAAGGCGCGGATTTTGGCAGC
AGGCGGAAGGGTGTTTGCCGTCCGTTACGACGACGGAGTGGACGGGCCTC
AGAGGGTGTGGTTAGGCCACATCGACGCGCCTGGCTTGGCAATGTCAAGG
TCACTGGGGGATGCAGTAGCTCACTCAGTGGGAGTGAGCAGCGAGCCGGA
GGTGTTTGAATACACCCTGGATCCGAAAAAGGAAGTGTTTTTAATCTTGG
CCACGGACGGGTTGTGGGAGTTTTGTAGTGATGGGGAGGTGGTGACCATG
GTGGGGAGGGCCAGAGACCCACAGGATGCAGTGGAGGGGTTGATCAAAGA
GGCGACCGCTCGATGGTTGAGGGAAGAGCAGGTGGTAGATGACACAACGG
TGTGCGTGGCGTTTTTGGGGGATTGGAAGAAGTAGGAGGGAAGGAGGGAG
CAGGTTGAAAGGGAAGAGGGAAGAAAGTAAATCGAAGGACGACAGAGCTG
TATGAACAAAGAGGCAATCCTCTGCAGAAAAGGAGAGAAACGGAATGCGC
GAAGAGGGAGAGGGGAGGCGGAGGGGGAGGGAGAG

Coding sequence (CDS) from alignment at scaffold_4:168863..170497+

>mRNA_1848 ID=mRNA_1848|Name=jgi.p|Nanoce1779_2|578170|organism=Nannochloropsis oceanica|type=CDS|length=1395bp|location=Sequence derived from alignment at scaffold_4:168863..170497+ (Nannochloropsis oceanica)
ATGACAGACCCCATAATCGCCCTCCCGGTCCGTGTAACTCGGAGCATGAT
GACCCGCACCGCGACCAGTGTTGACGAGGAGGATGACAGCGGCATGACTT
CCCCGACGTCGACGATACAGGAGCGTCAGGAGCAGGAGAAAGCGGTAGCT
CAACGGAGGGGGGACGAACACGAACAACAGCTCGACGACCAGTGGCATGA
CATTCCGGATTCTCCCTCCGCAGCGGGCACCACCTCGGTGCAGACCACGC
ACACAGGCCTGCGCAAAGCTCGGCGGAAGCTGAGTGTAGTAAGCGAGAAT
GTACTTGTCGATGGGATTCAAGACATTCACTTGGACGAAACGCTGAACGT
AGGGGGAGACAAAGGTAGCGTGCTGCCGTGTCTGGTGAGTGCCTACGCGG
GCAAGAGCCAAAAGGGCTTTGCCCCATACCACAGCCGAAAAAAGAATCAG
GACGCCTTGATTATGGCGGAGGAGCCGCATACCTCTACCCTCTTCTTTTG
TGTCTTGGATGGCCACGGCGAGTTTGGGGAGCTCGTCTCAGGGTTTTTCC
AAAGAGAACTGGCCCGCAATTTGTTCGCGCACGATTGCTTCGAGCATGAC
CCACGCCGGGCATTCGTCGAGGTTCTGACAGCACTGGAGAAGGCATTGCT
GCGGGACACGAAGGTTGATACAGATTTTTCGGGGACCACTATGTCGGCGG
TGTTGCTAAGGGGGGATCGCATGCTGGTATTTAACTGCGGCGACTCCCGC
GTCACGGTCGGAGTCAAGGAAGAGCCATCCACTCCAACGGCAGCAACATC
AACAGCCGCAGTTGCAAGGGAGGGTAACAACTCTTCCTCGTCCTCCATCT
CCAAACCAACCCCCACCAAGATCTCCTCCTTCCTCTCCCGCCGGTCCCTC
TCCCTCTCTTCCTCAAAAGCTGCCACCGCTCCTCCCCTATTAAAAGCCAC
CGCGCTCTCGATCGACCACAAGCCAGACATTCCATCGGAAAAGGCGCGGA
TTTTGGCAGCAGGCGGAAGGGTGTTTGCCGTCCGTTACGACGACGGAGTG
GACGGGCCTCAGAGGGTGTGGTTAGGCCACATCGACGCGCCTGGCTTGGC
AATGTCAAGGTCACTGGGGGATGCAGTAGCTCACTCAGTGGGAGTGAGCA
GCGAGCCGGAGGTGTTTGAATACACCCTGGATCCGAAAAAGGAAGTGTTT
TTAATCTTGGCCACGGACGGGTTGTGGGAGTTTTGTAGTGATGGGGAGGT
GGTGACCATGGTGGGGAGGGCCAGAGACCCACAGGATGCAGTGGAGGGGT
TGATCAAAGAGGCGACCGCTCGATGGTTGAGGGAAGAGCAGGTGGTAGAT
GACACAACGGTGTGCGTGGCGTTTTTGGGGGATTGGAAGAAGTAG

Synonyms

Publications