jgi.p|Nanoce1779_2|578167, mRNA_1847 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|578167
Unique Name	mRNA_1847
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1495
Alignment location	scaffold_4:166587..168454 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	578253
Track	FilteredModels2
ProteinId	578167

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:166587..168454 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578167	gene_1847	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578167	mRNA_1847-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1847	CDS_1847	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:166587..168454+
coding sequence from alignment at scaffold_4:166587..168454+

mRNA sequence

>mRNA_1847 ID=mRNA_1847|Name=jgi.p|Nanoce1779_2|578167|organism=Nannochloropsis oceanica|type=mRNA|length=1495bp
AGGTAATCAGAGACATTCAACTTGATTGCTTACCATCAACCTCCGTCTAT
AGTCCCACAAGCCGCACAAAGCCATGGTCGCGCCTCCTCCCAGTACCAGC
GAAACCAGAAGTACCAGCAGCAACATCACTACTTCGACATTCATTCCTAC
AAATGCTCAGACCAGCGGTGTGATTGTCACTGTCACAGGCGCGGCAGGTT
ATCTGGGAGAGCACTTGGTCAAGACTTTTCTCGAGGCAGGTTACACGGTC
CGCGGCACATTGCGTGATCCCAGCAAGCAAGAGAAGGTCGAGGTCTTGAA
GGCCCTTCCCGGTGCCGCCGAGCGCCTGACTCTCCACGCCGCCGATCTTC
TCGTCCCCGGTTCGTTCGATGCAGTGGTGGAAGGGGCGACGTATGTGATC
CATAGCGCATCGCCTGTCGCTCTGGAGGTGGTGGATGACCCTCAGGAGAC
GCTGATCCGCCCCGCCGTACAAGGCACCGAGAACGTGCTGGATTCTGTCC
AAAAGTCTACCACTGTCAAGCGCGTTGTCCTGACTGGTTCCTTTCGCGCC
GTCTTCGGTCTTGGAGATGAACACCCCAAGGGCTATGTGTACACCGAGAA
AGACTGGAACGTCAAGTCTTCCTTGGAGAACAACCAAGGGTACGCCCTCA
GCAAGCTGCTTGCTGAGAAAGCCGCCTGGGCGGTAGTCGAGCATGTGAAG
CCCACCACGTGGGACATGGTCGTCCTAAATCCAGGATTGATTTTCGGGCC
GTTGCTATCCAGGCACCACGAGGAGGCGTTTTCCATTCAGTTTTTCAAGC
AGCTAGTGACCGGCGAGCTGCCCCCAGTCAAGCTCCCCTGGGCTGTGGTC
GACGTCCGCGACGTGGCCAAAGCCCACGTCCGCGCCTGCCAACATACGCC
TGCCGTCGGCCGCTACCTCTTAACGAGCGCCACATTCAGCCTTCGTGAGA
TTCTGGATTGCGTGCGTGATAAAATTTGGCGACCATTGTTGCGCATCTCC
GTCCCCAAAGCAGCGTTGTGGCTCGGGTTTTACACGGGAATGGTCGGCAA
GAAGTTGTCGAAGGACGATATCATCCATAACGTGGGGTATCGCATCTTGT
TTGATAGCAGCAAGGCGCGGCGGGAGTTGATGCCGGAAGGGTTTGTGGAG
CCGAGGGAAACATTTAGGGAGATGTACACCAGTTTGCAGGATCACAAGAT
TTTGGGGACATTTAATTAGCTAGTATGGTGATCGGATGGGTGTGAAAAGC
AAGGTGGATTTTGTGTAAGTGGTAATGTTGCAGGAATCTATAAATGGGTA
TTGGCAGAGGCTCGGTAACAGCGGCGCAGCAAAAAAAACTAAGAGGATTG
TGCGGTGAAAAGAGAGAAAAGAGTAACCCTTTTGAGAGAGTGTGCGTGGC
GGTCTATTTGTGTGGAAGTAGACGGTGGAAGTCGGGAGAGGGGCCTGGTG
AGAAGAGCACCAGGGGGGCGATGAAGAAATGTGTGCGTGAACAAA

protein sequence of jgi.p|Nanoce1779_2|578167

>mRNA_1847-protein ID=mRNA_1847-protein|Name=jgi.p|Nanoce1779_2|578167|organism=Nannochloropsis oceanica|type=polypeptide|length=382bp
MVAPPPSTSETRSTSSNITTSTFIPTNAQTSGVIVTVTGAAGYLGEHLVK
TFLEAGYTVRGTLRDPSKQEKVEVLKALPGAAERLTLHAADLLVPGSFDA
VVEGATYVIHSASPVALEVVDDPQETLIRPAVQGTENVLDSVQKSTTVKR
VVLTGSFRAVFGLGDEHPKGYVYTEKDWNVKSSLENNQGYALSKLLAEKA
AWAVVEHVKPTTWDMVVLNPGLIFGPLLSRHHEEAFSIQFFKQLVTGELP
PVKLPWAVVDVRDVAKAHVRACQHTPAVGRYLLTSATFSLREILDCVRDK
IWRPLLRISVPKAALWLGFYTGMVGKKLSKDDIIHNVGYRILFDSSKARR
ELMPEGFVEPRETFREMYTSLQDHKILGTFN*

mRNA from alignment at scaffold_4:166587..168454+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1847 ID=mRNA_1847|Name=jgi.p|Nanoce1779_2|578167|organism=Nannochloropsis oceanica|type=mRNA|length=1868bp|location=Sequence derived from alignment at scaffold_4:166587..168454+ (Nannochloropsis oceanica)
AGGTAATCAGAGACATTCAACTTGATTGCTTACCATCAACCTCCGTCTAT
AGTCCCACAAGCCGCACAAAGCCATGGTCGCGCCTCCTCCCAGTACCAGC
GAAACCAGAAGTACCAGCAGCAACATCACTACTTCGACATTCATTCCTAC
AAATGCTCAGACCAGCGGTGTGATTGTCACTGTCACAGGCGCGGCAGGTT
ATCTGGGAGAGCACTTGGTCAAGACTTTTCTCGAGGCAGGTTACACGGTC
CGCGGCACATTGCGTGATCCCAGCAAGCAAGAGAAGGTCGAGGTCTTGAA
GGCCCTTCCCGGTGCCGCCGAGCGCCTGACTCTCCACGCCGCCGATCTTC
TCGTCCCCGGTTCGTTCGATGCAGTGGTGGAAGGGGCGACGTATGTGATC
CATAGCGCATCGCCTGTCGCTCTGGAGGTGGTGGATGACCCTCAGGAGAC
GCTGATCCGCCCCGCCGTACAAGGCACCGAGAACGTGCTGGATTCTGTCC
AAAAGTCTACCACTGTCAAGCGCGTTGTCCTGACTGGTTCCTTTCGCGCC
GTCTTCGGTCTTGGAGATGAACACCCCAAGGGCTATGTGTACACCGGTAA
GTTATTCATATTTGGTTTGTCTCCATGCATTTTCATCTCTATTCCGTCCG
TATTTTGTGCTCCCCGTCTGGAATATCACGGTGATGCTGCTCCTGAAAGA
CATGTTATGACATCCATGCCTCAGTCCCTACTCGAAATGAGATCACCCCC
TTAAAAACACTTTCTCTCTTCCCCCCATCCCCCTCCCTGCAGAGAAAGAC
TGGAACGTCAAGTCTTCCTTGGAGAACAACCAAGGGTACGCCCTCAGCAA
GCTGCTTGCTGAGAAAGCCGCCTGGGCGGTAGTCGAGCATGTGAAGCCCA
CCACGTGGGACATGGTCGTCCTAAATCCAGGATTGATTTTCGGGCCGTTG
CTATCCAGGCACCACGAGGAGGCGTTTTCCATTCAGTTTTTCAAGCAGGT
AGGGATCGATATGAATTTTGGGGGTGGATAAGCGGAGGGTATCACCTTCA
CTTTTCGTCGTTTATCACATCTACGTTTATGGCGGGGTTTTGTTTTTTAC
ATGAGCGTGCCTTTCTTCTCATTTCTTTTTTGCCTACGCTTTTCCTCCCT
CTTTTCCCCCCCATCCCACCCCCAGCTAGTGACCGGCGAGCTGCCCCCAG
TCAAGCTCCCCTGGGCTGTGGTCGACGTCCGCGACGTGGCCAAAGCCCAC
GTCCGCGCCTGCCAACATACGCCTGCCGTCGGCCGCTACCTCTTAACGAG
CGCCACATTCAGCCTTCGTGAGATTCTGGATTGCGTGCGTGATAAAATTT
GGCGACCATTGTTGCGCATCTCCGTCCCCAAAGCAGCGTTGTGGCTCGGG
TTTTACACGGGAATGGTCGGCAAGAAGTTGTCGAAGGACGATATCATCCA
TAACGTGGGGTATCGCATCTTGTTTGATAGCAGCAAGGCGCGGCGGGAGT
TGATGCCGGAAGGGTTTGTGGAGCCGAGGGAAACATTTAGGGAGATGTAC
ACCAGTTTGCAGGATCACAAGATTTTGGGGACATTTAATTAGCTAGTATG
GTGATCGGATGGGTGTGAAAAGCAAGGTGGATTTTGTGTAAGTGGTAATG
TTGCAGGAATCTATAAATGGGTATTGGCAGAGGCTCGGTAACAGCGGCGC
AGCAAAAAAAACTAAGAGGATTGTGCGGTGAAAAGAGAGAAAAGAGTAAC
CCTTTTGAGAGAGTGTGCGTGGCGGTCTATTTGTGTGGAAGTAGACGGTG
GAAGTCGGGAGAGGGGCCTGGTGAGAAGAGCACCAGGGGGGCGATGAAGA
AATGTGTGCGTGAACAAA

Coding sequence (CDS) from alignment at scaffold_4:166587..168454+

>mRNA_1847 ID=mRNA_1847|Name=jgi.p|Nanoce1779_2|578167|organism=Nannochloropsis oceanica|type=CDS|length=3438bp|location=Sequence derived from alignment at scaffold_4:166587..168454+ (Nannochloropsis oceanica)
ATGGTCGCGCCTCCTCCCAGTACCAGCGAAACCAGAAGTACCAGCAGCAA
CATCACTACTTCGACATTCATTCCTACAAATGCTCAGACCAGCGGTGTGA
TTGTCACTGTCACAGGCGCGGCAGGTTATCTGGGAGAGCACTTGGTCAAG
ACTTTTCTCGAGGCAGGTTACACGGTCCGCGGCACATTGCGTGATCCCAG
CAAGCAAGAGAAGGTCGAGGTCTTGAAGGCCCTTCCCGGTGCCGCCGAGC
GCCTGACTCTCCACGCCGCCGATCTTCTCGTCCCCGGTTCGTTCGATGCA
GTGGTGGAAGGGGCGACGTATGTGATCCATAGCGCATCGCCTGTCGCTCT
GGAGGTGGTGGATGACCCTCAGGAGACGCTGATCCGCCCCGCCGTACAAG
GCACCGAGAACGTGCTGGATTCTGTCCAAAAGTCTACCACTGTCAAGCGC
GTTGTCCTGACTGGTTCCTTTCGCGCCGTCTTCGGTCTTGGAGATGAACA
CCCCAAGGGCTATGTGTACACCGAGAAAGACTGGAACGTCAAGTCTTCCT
TGGAGAACAACCAAGGGTACGCCCTCAGCAAGCTGCTTGCTGAGAAAGCC
GCCTGGGCGGTAGTCGAGCATGTGAAGCCCACCACGTGGGACATGGTCGT
CCTAAATCCAGGATTGATTTTCGGGCCGTTGCTATCCAGGCACCACGAGG
AGGCGTTTTCCATTCAGTTTTTCAAGCAGCTAGTGACCGGCGAGCTGCCC
CCAGTCAAGCTCCCCTGGGCTGTGGTCGACGTCCGCGACGTGGCCAAAGC
CCACGTCCGCGCCTGCCAACATACGCCTGCCGTCGGCCGCTACCTCTTAA
CGAGCGCCACATTCAGCCTTCGTGAGATTCTGGATTGCGTGCGTGATAAA
ATTTGGCGACCATTGTTGCGCATCTCCGTCCCCAAAGCAGCGTTGTGGCT
CGGGTTTTACACGGGAATGGTCGGCAAGAAGTTGTCGAAGGACGATATCA
TCCATAACGTGGGGTATCGCATCTTGTTTGATAGCAGCAAGGCGCGGCGG
GAGTTGATGCCGGAAGGGTTTGTGGAGCCGAGGGAAACATTTAGGGAGAT
GTACACCAGTTTGCAGGATCACAAGATTTTGGGGACATTTAATTAGATGG
TCGCGCCTCCTCCCAGTACCAGCGAAACCAGAAGTACCAGCAGCAACATC
ACTACTTCGACATTCATTCCTACAAATGCTCAGACCAGCGGTGTGATTGT
CACTGTCACAGGCGCGGCAGGTTATCTGGGAGAGCACTTGGTCAAGACTT
TTCTCGAGGCAGGTTACACGGTCCGCGGCACATTGCGTGATCCCAGCAAG
CAAGAGAAGGTCGAGGTCTTGAAGGCCCTTCCCGGTGCCGCCGAGCGCCT
GACTCTCCACGCCGCCGATCTTCTCGTCCCCGGTTCGTTCGATGCAGTGG
TGGAAGGGGCGACGTATGTGATCCATAGCGCATCGCCTGTCGCTCTGGAG
GTGGTGGATGACCCTCAGGAGACGCTGATCCGCCCCGCCGTACAAGGCAC
CGAGAACGTGCTGGATTCTGTCCAAAAGTCTACCACTGTCAAGCGCGTTG
TCCTGACTGGTTCCTTTCGCGCCGTCTTCGGTCTTGGAGATGAACACCCC
AAGGGCTATGTGTACACCGAGAAAGACTGGAACGTCAAGTCTTCCTTGGA
GAACAACCAAGGGTACGCCCTCAGCAAGCTGCTTGCTGAGAAAGCCGCCT
GGGCGGTAGTCGAGCATGTGAAGCCCACCACGTGGGACATGGTCGTCCTA
AATCCAGGATTGATTTTCGGGCCGTTGCTATCCAGGCACCACGAGGAGGC
GTTTTCCATTCAGTTTTTCAAGCAGCTAGTGACCGGCGAGCTGCCCCCAG
TCAAGCTCCCCTGGGCTGTGGTCGACGTCCGCGACGTGGCCAAAGCCCAC
GTCCGCGCCTGCCAACATACGCCTGCCGTCGGCCGCTACCTCTTAACGAG
CGCCACATTCAGCCTTCGTGAGATTCTGGATTGCGTGCGTGATAAAATTT
GGCGACCATTGTTGCGCATCTCCGTCCCCAAAGCAGCGTTGTGGCTCGGG
TTTTACACGGGAATGGTCGGCAAGAAGTTGTCGAAGGACGATATCATCCA
TAACGTGGGGTATCGCATCTTGTTTGATAGCAGCAAGGCGCGGCGGGAGT
TGATGCCGGAAGGGTTTGTGGAGCCGAGGGAAACATTTAGGGAGATGTAC
ACCAGTTTGCAGGATCACAAGATTTTGGGGACATTTAATTAGATGGTCGC
GCCTCCTCCCAGTACCAGCGAAACCAGAAGTACCAGCAGCAACATCACTA
CTTCGACATTCATTCCTACAAATGCTCAGACCAGCGGTGTGATTGTCACT
GTCACAGGCGCGGCAGGTTATCTGGGAGAGCACTTGGTCAAGACTTTTCT
CGAGGCAGGTTACACGGTCCGCGGCACATTGCGTGATCCCAGCAAGCAAG
AGAAGGTCGAGGTCTTGAAGGCCCTTCCCGGTGCCGCCGAGCGCCTGACT
CTCCACGCCGCCGATCTTCTCGTCCCCGGTTCGTTCGATGCAGTGGTGGA
AGGGGCGACGTATGTGATCCATAGCGCATCGCCTGTCGCTCTGGAGGTGG
TGGATGACCCTCAGGAGACGCTGATCCGCCCCGCCGTACAAGGCACCGAG
AACGTGCTGGATTCTGTCCAAAAGTCTACCACTGTCAAGCGCGTTGTCCT
GACTGGTTCCTTTCGCGCCGTCTTCGGTCTTGGAGATGAACACCCCAAGG
GCTATGTGTACACCGAGAAAGACTGGAACGTCAAGTCTTCCTTGGAGAAC
AACCAAGGGTACGCCCTCAGCAAGCTGCTTGCTGAGAAAGCCGCCTGGGC
GGTAGTCGAGCATGTGAAGCCCACCACGTGGGACATGGTCGTCCTAAATC
CAGGATTGATTTTCGGGCCGTTGCTATCCAGGCACCACGAGGAGGCGTTT
TCCATTCAGTTTTTCAAGCAGCTAGTGACCGGCGAGCTGCCCCCAGTCAA
GCTCCCCTGGGCTGTGGTCGACGTCCGCGACGTGGCCAAAGCCCACGTCC
GCGCCTGCCAACATACGCCTGCCGTCGGCCGCTACCTCTTAACGAGCGCC
ACATTCAGCCTTCGTGAGATTCTGGATTGCGTGCGTGATAAAATTTGGCG
ACCATTGTTGCGCATCTCCGTCCCCAAAGCAGCGTTGTGGCTCGGGTTTT
ACACGGGAATGGTCGGCAAGAAGTTGTCGAAGGACGATATCATCCATAAC
GTGGGGTATCGCATCTTGTTTGATAGCAGCAAGGCGCGGCGGGAGTTGAT
GCCGGAAGGGTTTGTGGAGCCGAGGGAAACATTTAGGGAGATGTACACCA
GTTTGCAGGATCACAAGATTTTGGGGACATTTAATTAG

Synonyms

Publications