jgi.p|Nanoce1779_2|628049, mRNA_1846 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|628049
Unique NamemRNA_1846
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length841
Alignment locationscaffold_4:164656..166213 +

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Properties
Property NameValue
TranscriptId628135
TrackFilteredModels2
ProteinId628049
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:164656..166213 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|628049gene_1846Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|628049mRNA_1846-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1846CDS_1846Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1846 ID=mRNA_1846|Name=jgi.p|Nanoce1779_2|628049|organism=Nannochloropsis oceanica|type=mRNA|length=841bp
AGCCGTGGTGTTTGCCTCAATCCCCCTCAACCATCCTTCCTCACGCTTCC
CAGCACCGCGCTCCCTCCCCCCACGCCGTAGAAATCCGCATAACAAGCCT
GGAAATATGGCGGATGACGAAGCAGAACTTAACAAGGTTACCAATGATTT
GGACCTGGACGCGGTGGTTTACCTCGACGAGACCTGGCACCAAGAAGGTT
TCGAGGAAGGGAAGGAGGCGGGCCGACAACGGGGACATAGGGAAGGGAGA
GCAGTCGGCAAGGCTAAGGGTTTTGAGATTGGCTGCGAAATAGGATACTA
CAAAGCATGCTGTCAGACGTGGCTGGCAGTGCTGCGCCGAAGAAAGAGTG
AGAAGAAGGAAGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGTCTGAAGGGGAGGCAAGAAAGGAAAACGGAGGAATGGG
CCTGGTGATGGACATGCAAATCGAGGAGAGGGTAATCAGGACTATGGAAA
ATATCGTTCAGCTCGTCAACGACTTTCCTCGACATAACTCCCCCGACATT
GACATAGCCGAGCAAGTCCAACGACTCCGCGCCAAATTTCGAGCAGCCGC
GTCCATCCTGGGTGTGGCGGTGGCCTTCGCCTTGCACAAGACCAGCCGAC
ATGGATCAGGCGGGGGAATCGCGGCGGTAGCCGAGGGATTGTCGTTTTAG
GGTAGAGTCGCATGTAGATAAAAGCTTGTGAAATAAAGACAGGACATTGA
TAGATGGGCGATAGGGTGATTTTTAAAGGAAGGAGACAGAATAAGTGAAT
TGGCTCAATGAAATGACATAAATACCTCATGTAGACTCGTG
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protein sequence of jgi.p|Nanoce1779_2|628049

>mRNA_1846-protein ID=mRNA_1846-protein|Name=jgi.p|Nanoce1779_2|628049|organism=Nannochloropsis oceanica|type=polypeptide|length=198bp
MADDEAELNKVTNDLDLDAVVYLDETWHQEGFEEGKEAGRQRGHREGRAV
GKAKGFEIGCEIGYYKACCQTWLAVLRRRKSEKKEEEEEEEEEEEEEEEE
EESEGEARKENGGMGLVMDMQIEERVIRTMENIVQLVNDFPRHNSPDIDI
AEQVQRLRAKFRAAASILGVAVAFALHKTSRHGSGGGIAAVAEGLSF*
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mRNA from alignment at scaffold_4:164656..166213+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1846 ID=mRNA_1846|Name=jgi.p|Nanoce1779_2|628049|organism=Nannochloropsis oceanica|type=mRNA|length=1558bp|location=Sequence derived from alignment at scaffold_4:164656..166213+ (Nannochloropsis oceanica)
AGCCGTGGTGTTTGCCTCAATCCCCCTCAACCATCCTTCCTCACGCTTCC
CAGCACCGCGCTCCCTCCCCCCACGCCGTAGAAATCCGCATAACAAGCCT
GGAAATATGGCGGATGACGAAGCAGAACTTAACAAGGTTACCAATGATTT
GGACCTGGACGCGGTGGTTTACCTCGACGAGACCTGGCACCAAGAAGGTT
TCGAGGAAGGGAAGGAGGCGGGCCGACAACGGGGACATAGGGAAGGGAGA
GCAGTCGGGTACGTGTGATAATTTGAAAAAGAGAGGGACGAAGAGTGGTA
GTAGGAAGGAAGTAGAGAAAAATGGTTACTTGGGGGGAAATATGCCCGGG
AAGACGTCAGTGACAGAAAATAAAGGGAGGAGTAGAGTCGTGCATTTGTT
GGAAGGGGCTCGCGGATGCTCCCCAGGAGAGGCGAATGAGACGATGACTG
GAAGAAAAGCGACGCTAATGGGACCCCTACATCTTTATTCCTTATTGCAA
ACAACGCCGAGGAGAAGATCATTTGTGCTTCCAATCGTCCTATTTGACTT
GTCGGGGGCGATTGCAGGATTGTCATACCACTCCATTCATGTCTGCCACG
TATCCGTCATCACACAAAGCAAGGCTAAGGGTTTTGAGATTGGCTGCGAA
ATAGGATACTACAAAGCATGCTGTCAGACGTGGCTGGCAGTGCTGCGCCG
AAGAAAGAGTGAGAAGAAGGAAGAGGAGGAGGAGGAAGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGTCTGAAGGGGAGGCAAGAAAGGAAAAC
GGAGGAATGGGCCTGGTGATGGACATGCAAATCGAGGAGAGGTAAGGGTG
ATTTGCGAATCATGCATACACGACATTCGATTAAATTTTCTCAAGAAATA
GAGTCCACAGGGGAAGGGGTAGGCAAGCCATGATGGCCAAAAGATACGGG
GCGCACTCACTCAACTGACATTGCTATCCTCCTCTCGTTTCCCTCGCATA
CACAGGGTAATCAGGACTATGGAAAATATCGTTCAGCTCGTCAACGACTT
TCCTCGACATGTAGGTTTCTCAATGATCGTTTAATTTCGTTGTTGGTTGG
TAGGACGGACAAGGGATATTCTTACATTTGTATACAGCCTGAATTATCTT
CTGCCCCCTTTACTGCACTACGAGACCGTGAAGTTGTTATCTGTTCTCGA
CGTTCACTTACTCATCTTTTCTGGTAATTATTTCTCCGTTTTCTTCGCTT
AGAACTCCCCCGACATTGACATAGCCGAGCAAGTCCAACGACTCCGCGCC
AAATTTCGAGCAGCCGCGTCCATCCTGGGTGTGGCGGTGGCCTTCGCCTT
GCACAAGACCAGCCGACATGGATCAGGCGGGGGAATCGCGGCGGTAGCCG
AGGGATTGTCGTTTTAGGGTAGAGTCGCATGTAGATAAAAGCTTGTGAAA
TAAAGACAGGACATTGATAGATGGGCGATAGGGTGATTTTTAAAGGAAGG
AGACAGAATAAGTGAATTGGCTCAATGAAATGACATAAATACCTCATGTA
GACTCGTG
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Coding sequence (CDS) from alignment at scaffold_4:164656..166213+

>mRNA_1846 ID=mRNA_1846|Name=jgi.p|Nanoce1779_2|628049|organism=Nannochloropsis oceanica|type=CDS|length=2376bp|location=Sequence derived from alignment at scaffold_4:164656..166213+ (Nannochloropsis oceanica)
ATGGCGGATGACGAAGCAGAACTTAACAAGGTTACCAATGATTTGGACCT
GGACGCGGTGGTTTACCTCGACGAGACCTGGCACCAAGAAGGTTTCGAGG
AAGGGAAGGAGGCGGGCCGACAACGGGGACATAGGGAAGGGAGAGCAGTC
GGCAAGGCTAAGGGTTTTGAGATTGGCTGCGAAATAGGATACTACAAAGC
ATGCTGTCAGACGTGGCTGGCAGTGCTGCGCCGAAGAAAGAGTGAGAAGA
AGGAAGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGTCTGAAGGGGAGGCAAGAAAGGAAAACGGAGGAATGGGCCTGGT
GATGGACATGCAAATCGAGGAGAGGGTAATCAGGACTATGGAAAATATCG
TTCAGCTCGTCAACGACTTTCCTCGACATAACTCCCCCGACATTGACATA
GCCGAGCAAGTCCAACGACTCCGCGCCAAATTTCGAGCAGCCGCGTCCAT
CCTGGGTGTGGCGGTGGCCTTCGCCTTGCACAAGACCAGCCGACATGGAT
CAGGCGGGGGAATCGCGGCGGTAGCCGAGGGATTGTCGTTTTAGATGGCG
GATGACGAAGCAGAACTTAACAAGGTTACCAATGATTTGGACCTGGACGC
GGTGGTTTACCTCGACGAGACCTGGCACCAAGAAGGTTTCGAGGAAGGGA
AGGAGGCGGGCCGACAACGGGGACATAGGGAAGGGAGAGCAGTCGGCAAG
GCTAAGGGTTTTGAGATTGGCTGCGAAATAGGATACTACAAAGCATGCTG
TCAGACGTGGCTGGCAGTGCTGCGCCGAAGAAAGAGTGAGAAGAAGGAAG
AGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
TCTGAAGGGGAGGCAAGAAAGGAAAACGGAGGAATGGGCCTGGTGATGGA
CATGCAAATCGAGGAGAGGGTAATCAGGACTATGGAAAATATCGTTCAGC
TCGTCAACGACTTTCCTCGACATAACTCCCCCGACATTGACATAGCCGAG
CAAGTCCAACGACTCCGCGCCAAATTTCGAGCAGCCGCGTCCATCCTGGG
TGTGGCGGTGGCCTTCGCCTTGCACAAGACCAGCCGACATGGATCAGGCG
GGGGAATCGCGGCGGTAGCCGAGGGATTGTCGTTTTAGATGGCGGATGAC
GAAGCAGAACTTAACAAGGTTACCAATGATTTGGACCTGGACGCGGTGGT
TTACCTCGACGAGACCTGGCACCAAGAAGGTTTCGAGGAAGGGAAGGAGG
CGGGCCGACAACGGGGACATAGGGAAGGGAGAGCAGTCGGCAAGGCTAAG
GGTTTTGAGATTGGCTGCGAAATAGGATACTACAAAGCATGCTGTCAGAC
GTGGCTGGCAGTGCTGCGCCGAAGAAAGAGTGAGAAGAAGGAAGAGGAGG
AGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGTCTGAA
GGGGAGGCAAGAAAGGAAAACGGAGGAATGGGCCTGGTGATGGACATGCA
AATCGAGGAGAGGGTAATCAGGACTATGGAAAATATCGTTCAGCTCGTCA
ACGACTTTCCTCGACATAACTCCCCCGACATTGACATAGCCGAGCAAGTC
CAACGACTCCGCGCCAAATTTCGAGCAGCCGCGTCCATCCTGGGTGTGGC
GGTGGCCTTCGCCTTGCACAAGACCAGCCGACATGGATCAGGCGGGGGAA
TCGCGGCGGTAGCCGAGGGATTGTCGTTTTAGATGGCGGATGACGAAGCA
GAACTTAACAAGGTTACCAATGATTTGGACCTGGACGCGGTGGTTTACCT
CGACGAGACCTGGCACCAAGAAGGTTTCGAGGAAGGGAAGGAGGCGGGCC
GACAACGGGGACATAGGGAAGGGAGAGCAGTCGGCAAGGCTAAGGGTTTT
GAGATTGGCTGCGAAATAGGATACTACAAAGCATGCTGTCAGACGTGGCT
GGCAGTGCTGCGCCGAAGAAAGAGTGAGAAGAAGGAAGAGGAGGAGGAGG
AAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGTCTGAAGGGGAG
GCAAGAAAGGAAAACGGAGGAATGGGCCTGGTGATGGACATGCAAATCGA
GGAGAGGGTAATCAGGACTATGGAAAATATCGTTCAGCTCGTCAACGACT
TTCCTCGACATAACTCCCCCGACATTGACATAGCCGAGCAAGTCCAACGA
CTCCGCGCCAAATTTCGAGCAGCCGCGTCCATCCTGGGTGTGGCGGTGGC
CTTCGCCTTGCACAAGACCAGCCGACATGGATCAGGCGGGGGAATCGCGG
CGGTAGCCGAGGGATTGTCGTTTTAG
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Synonyms
Publications