jgi.p|Nanoce1779_2|578142, mRNA_1844 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578142
Unique NamemRNA_1844
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1013
Alignment locationscaffold_4:154063..155155 +

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Properties
Property NameValue
TranscriptId578228
TrackFilteredModels2
ProteinId578142
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:154063..155155 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578142gene_1844Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578142mRNA_1844-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1844CDS_1844Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1844 ID=mRNA_1844|Name=jgi.p|Nanoce1779_2|578142|organism=Nannochloropsis oceanica|type=mRNA|length=1013bp
GGCAGCGGATGAAGCGCGGTAAGGGCGCCTGCTTTCGCTGTAGGCCGCTC
TGGCTTGTCTCTGCTGTATTGTAAGATGTAGGAAAGTGCGGGGGTTGTGA
GTGTCCGTGCACGGCAGACCGTACTTTTTCGCTTTTGTTCTGGAGCCCAT
GTGGAGCCCTATTCACAGATGGAGCCTGGTATTGATTGTCCCACCCTGGA
GCCTTTTCCAGCCCACCGACAAATAGCCGACATCGTGGTACATTTAATGA
GGAGGTCATGTGCCGGGTGCTTGCGGAATCGTCCTTGGTTAGCTGTGGAT
GTAGAAGTTCCTTACTTGCGTTCAAGTTGCGTGCCGCCATGCCGTTGGGG
CGATGAAGCAGCGATTCAAGGCATTACTCACACACACCATGCCCACTCTC
AATTCACAGAGGCTCTTACAATGGCATTGGCAGGACTTGCGGACTACGGC
TCGTCATCGGAGGACGAAGAGGAGCAGCAAAAAGTAGAGGAAGCGAAGCT
CCAGCCACCACCTTCTCTTCCGGTTAAGAAGAAGAGTTTGTTACCCTCGG
CGAACGATCTTTTTGCGTCCATCGATGGCCCTGCATTCATGGGCGGCGGC
GGCGCCGTGCGAACAAAGCGGACAGCTCAAGAAATAAGTGCCACCCGCCC
GTCCCTCCAAGTTCCTTCCTCCAGTCTTGGCACACAACCACCTTCGCAGA
AACGCCTTGCGGCCGCAGGACCATCAAAAGAAGGGAACAGATCTGCGGCA
AAAGTGTCGGCCGCGGCGAAAGGAAAGACGGGGAGTAATGGGATGCTATT
GCCTCCACAAGTGAGTCGGCCGGGGGGACGAGGAAATGTGGTAACAGAGG
ACGTGTCTGCATGGACGAGCAAGGCCGGACTTGCAAAGGCGGATGGTAAT
AGGAGGAAGGAGGGGGAGGGGGCAAGGAGAAGGAAAGAAGGAGGTGGAGA
GAAGAATTAAGAAAAGAAAAGCGTGAAGATAGGCAAATAGAAATAAAAAC
GAGTTTTGTACGG
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protein sequence of jgi.p|Nanoce1779_2|578142

>mRNA_1844-protein ID=mRNA_1844-protein|Name=jgi.p|Nanoce1779_2|578142|organism=Nannochloropsis oceanica|type=polypeptide|length=264bp
MEPGIDCPTLEPFPAHRQIADIVVHLMRRSCAGCLRNRPWLAVDVEVPYL
RSSCVPPCRWGDEAAIQGITHTHHAHSQFTEALTMALAGLADYGSSSEDE
EEQQKVEEAKLQPPPSLPVKKKSLLPSANDLFASIDGPAFMGGGGAVRTK
RTAQEISATRPSLQVPSSSLGTQPPSQKRLAAAGPSKEGNRSAAKVSAAA
KGKTGSNGMLLPPQVSRPGGRGNVVTEDVSAWTSKAGLAKADGNRRKEGE
GARRRKEGGGEKN*
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mRNA from alignment at scaffold_4:154063..155155+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1844 ID=mRNA_1844|Name=jgi.p|Nanoce1779_2|578142|organism=Nannochloropsis oceanica|type=mRNA|length=1093bp|location=Sequence derived from alignment at scaffold_4:154063..155155+ (Nannochloropsis oceanica)
GGCAGCGGATGAAGCGCGGTAAGGGCGCCTGCTTTCGCTGTAGGCCGCTC
TGGCTTGTCTCTGCTGTATTGTAAGATGTAGGAAAGTGCGGGGGTTGTGA
GTGTCCGTGCACGGCAGACCGTACTTTTTCGCTTTTGTTCTGGAGCCCAT
GTGGAGCCCTATTCACAGATGGAGCCTGGTATTGATTGTCCCACCCTGGA
GCCTTTTCCAGCCCACCGACAAATAGCCGACATCGTGGTACATTTAATGA
GGAGGTCATGTGCCGGGTGCTTGCGGAATCGTCCTTGGTTAGCTGTGGAT
GTAGAAGTTCCTTACTTGCGTTCAAGTTGCGTGCCGCCATGCCGTTGGGG
CGATGAAGCAGCGATTCAAGGCATTACTCACACACACCATGCCCACTCTC
AATTCACAGAGGCTCTTACAATGGCATTGGCAGGACTTGCGGACTACGGC
TCGTCATCGGAGGACGAAGAGGAGCAGCAAAAAGTAGAGGAAGCGAAGCT
CCAGGTGTGTAAGAAGTAGCAGTCATCCCCCTCGCCTTAGCTACCATAAA
ACCTAAACATCCCCCTTCAATACTCCAAACCCAGCCACCACCTTCTCTTC
CGGTTAAGAAGAAGAGTTTGTTACCCTCGGCGAACGATCTTTTTGCGTCC
ATCGATGGCCCTGCATTCATGGGCGGCGGCGGCGCCGTGCGAACAAAGCG
GACAGCTCAAGAAATAAGTGCCACCCGCCCGTCCCTCCAAGTTCCTTCCT
CCAGTCTTGGCACACAACCACCTTCGCAGAAACGCCTTGCGGCCGCAGGA
CCATCAAAAGAAGGGAACAGATCTGCGGCAAAAGTGTCGGCCGCGGCGAA
AGGAAAGACGGGGAGTAATGGGATGCTATTGCCTCCACAAGTGAGTCGGC
CGGGGGGACGAGGAAATGTGGTAACAGAGGACGTGTCTGCATGGACGAGC
AAGGCCGGACTTGCAAAGGCGGATGGTAATAGGAGGAAGGAGGGGGAGGG
GGCAAGGAGAAGGAAAGAAGGAGGTGGAGAGAAGAATTAAGAAAAGAAAA
GCGTGAAGATAGGCAAATAGAAATAAAAACGAGTTTTGTACGG
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Coding sequence (CDS) from alignment at scaffold_4:154063..155155+

>mRNA_1844 ID=mRNA_1844|Name=jgi.p|Nanoce1779_2|578142|organism=Nannochloropsis oceanica|type=CDS|length=1584bp|location=Sequence derived from alignment at scaffold_4:154063..155155+ (Nannochloropsis oceanica)
ATGGAGCCTGGTATTGATTGTCCCACCCTGGAGCCTTTTCCAGCCCACCG
ACAAATAGCCGACATCGTGGTACATTTAATGAGGAGGTCATGTGCCGGGT
GCTTGCGGAATCGTCCTTGGTTAGCTGTGGATGTAGAAGTTCCTTACTTG
CGTTCAAGTTGCGTGCCGCCATGCCGTTGGGGCGATGAAGCAGCGATTCA
AGGCATTACTCACACACACCATGCCCACTCTCAATTCACAGAGGCTCTTA
CAATGGCATTGGCAGGACTTGCGGACTACGGCTCGTCATCGGAGGACGAA
GAGGAGCAGCAAAAAGTAGAGGAAGCGAAGCTCCAGCCACCACCTTCTCT
TCCGGTTAAGAAGAAGAGTTTGTTACCCTCGGCGAACGATCTTTTTGCGT
CCATCGATGGCCCTGCATTCATGGGCGGCGGCGGCGCCGTGCGAACAAAG
CGGACAGCTCAAGAAATAAGTGCCACCCGCCCGTCCCTCCAAGTTCCTTC
CTCCAGTCTTGGCACACAACCACCTTCGCAGAAACGCCTTGCGGCCGCAG
GACCATCAAAAGAAGGGAACAGATCTGCGGCAAAAGTGTCGGCCGCGGCG
AAAGGAAAGACGGGGAGTAATGGGATGCTATTGCCTCCACAAGTGAGTCG
GCCGGGGGGACGAGGAAATGTGGTAACAGAGGACGTGTCTGCATGGACGA
GCAAGGCCGGACTTGCAAAGGCGGATGGTAATAGGAGGAAGGAGGGGGAG
GGGGCAAGGAGAAGGAAAGAAGGAGGTGGAGAGAAGAATTAAATGGAGCC
TGGTATTGATTGTCCCACCCTGGAGCCTTTTCCAGCCCACCGACAAATAG
CCGACATCGTGGTACATTTAATGAGGAGGTCATGTGCCGGGTGCTTGCGG
AATCGTCCTTGGTTAGCTGTGGATGTAGAAGTTCCTTACTTGCGTTCAAG
TTGCGTGCCGCCATGCCGTTGGGGCGATGAAGCAGCGATTCAAGGCATTA
CTCACACACACCATGCCCACTCTCAATTCACAGAGGCTCTTACAATGGCA
TTGGCAGGACTTGCGGACTACGGCTCGTCATCGGAGGACGAAGAGGAGCA
GCAAAAAGTAGAGGAAGCGAAGCTCCAGCCACCACCTTCTCTTCCGGTTA
AGAAGAAGAGTTTGTTACCCTCGGCGAACGATCTTTTTGCGTCCATCGAT
GGCCCTGCATTCATGGGCGGCGGCGGCGCCGTGCGAACAAAGCGGACAGC
TCAAGAAATAAGTGCCACCCGCCCGTCCCTCCAAGTTCCTTCCTCCAGTC
TTGGCACACAACCACCTTCGCAGAAACGCCTTGCGGCCGCAGGACCATCA
AAAGAAGGGAACAGATCTGCGGCAAAAGTGTCGGCCGCGGCGAAAGGAAA
GACGGGGAGTAATGGGATGCTATTGCCTCCACAAGTGAGTCGGCCGGGGG
GACGAGGAAATGTGGTAACAGAGGACGTGTCTGCATGGACGAGCAAGGCC
GGACTTGCAAAGGCGGATGGTAATAGGAGGAAGGAGGGGGAGGGGGCAAG
GAGAAGGAAAGAAGGAGGTGGAGAGAAGAATTAA
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Synonyms
Publications