jgi.p|Nanoce1779_2|578132, mRNA_1841 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578132
Unique NamemRNA_1841
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length878
Alignment locationscaffold_4:141672..142549 -

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Properties
Property NameValue
TranscriptId578218
TrackFilteredModels2
ProteinId578132
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:141672..142549 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578132gene_1841Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578132mRNA_1841-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1841CDS_1841Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1841 ID=mRNA_1841|Name=jgi.p|Nanoce1779_2|578132|organism=Nannochloropsis oceanica|type=mRNA|length=878bp
TGGAGAGTGGGGGGGGAAGAAGGGACGTGGGGGGTGGGCTGGTTGATGGA
TACCGGTTCGGCGACAAGAATGATCAGGATTTGAGGTGTCGGAAGTTGAG
GAGTTGGGAGATTGTGGCGCGGGCAAAGGACAGGCTGACTAAAGCGTGGA
CAACGTGGCCGGAATTGGACGACGCGGTGTGGAAGGTTATAAACGATTGG
ACGAAGAACCATTGGGGGCCATGGAATTATAGGAAATGCATGGCGTTGGT
TTTGATCAACAAGAGTACGGGTGGGGTCCAGTTGGAGGGGATGCAATTCA
GGGATGGATCGGAGGTACATGTGATCGAGAGTCACTTGTTTGATACGGAT
TCGCGTGTGCTGGCGCCGGGTGGGGCGGTATTGATTTTCGCATGGTCCCA
TATTCCGACTGTGGTGAAGCAGGCGCATATCGCCCTACGAATGGAGACGA
CGGCGTTCAAAGGGGAATTTACTGATAAGTCAGCCTCGTTGCAGGCGCGG
CCGGGGGGTGACGTGTCATTTGTGGAGAAAACCCGAAAGTCGACGTATGT
CAAGTATGTGGTCGTGGTACGAGAGCAGCGATGAGCGAGTTGGATGAGGG
TGGGAATGGGAAAAAAAGAAGAGCGGAGGGAGGAGTCGATCAAGGAATTG
AGAGAATATTGCGATGGGGGTAAGAATTAATAATGCTGTCGTGCAGGGGA
TAAGGGAGAAAGAGGTATTGTACATGCCACGGGGTTTCAAAACGATGGGT
TGAGAGTTTGACGACATACGTTTTATGTGAAAAGACAGGGAAAAGATAGC
ATTATTATGTAAGAAGAATTAAGAAGCCAAAGGACGGGGGGAAAAGATAT
AGAATATACAATAGTTTTTGGATTAAAA
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protein sequence of jgi.p|Nanoce1779_2|578132

>mRNA_1841-protein ID=mRNA_1841-protein|Name=jgi.p|Nanoce1779_2|578132|organism=Nannochloropsis oceanica|type=polypeptide|length=115bp
MALVLINKSTGGVQLEGMQFRDGSEVHVIESHLFDTDSRVLAPGGAVLIF
AWSHIPTVVKQAHIALRMETTAFKGEFTDKSASLQARPGGDVSFVEKTRK
STYVKYVVVVREQR*
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mRNA from alignment at scaffold_4:141672..142549-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1841 ID=mRNA_1841|Name=jgi.p|Nanoce1779_2|578132|organism=Nannochloropsis oceanica|type=mRNA|length=878bp|location=Sequence derived from alignment at scaffold_4:141672..142549- (Nannochloropsis oceanica)
TGGAGAGTGGGGGGGGAAGAAGGGACGTGGGGGGTGGGCTGGTTGATGGA
TACCGGTTCGGCGACAAGAATGATCAGGATTTGAGGTGTCGGAAGTTGAG
GAGTTGGGAGATTGTGGCGCGGGCAAAGGACAGGCTGACTAAAGCGTGGA
CAACGTGGCCGGAATTGGACGACGCGGTGTGGAAGGTTATAAACGATTGG
ACGAAGAACCATTGGGGGCCATGGAATTATAGGAAATGCATGGCGTTGGT
TTTGATCAACAAGAGTACGGGTGGGGTCCAGTTGGAGGGGATGCAATTCA
GGGATGGATCGGAGGTACATGTGATCGAGAGTCACTTGTTTGATACGGAT
TCGCGTGTGCTGGCGCCGGGTGGGGCGGTATTGATTTTCGCATGGTCCCA
TATTCCGACTGTGGTGAAGCAGGCGCATATCGCCCTACGAATGGAGACGA
CGGCGTTCAAAGGGGAATTTACTGATAAGTCAGCCTCGTTGCAGGCGCGG
CCGGGGGGTGACGTGTCATTTGTGGAGAAAACCCGAAAGTCGACGTATGT
CAAGTATGTGGTCGTGGTACGAGAGCAGCGATGAGCGAGTTGGATGAGGG
TGGGAATGGGAAAAAAAGAAGAGCGGAGGGAGGAGTCGATCAAGGAATTG
AGAGAATATTGCGATGGGGGTAAGAATTAATAATGCTGTCGTGCAGGGGA
TAAGGGAGAAAGAGGTATTGTACATGCCACGGGGTTTCAAAACGATGGGT
TGAGAGTTTGACGACATACGTTTTATGTGAAAAGACAGGGAAAAGATAGC
ATTATTATGTAAGAAGAATTAAGAAGCCAAAGGACGGGGGGAAAAGATAT
AGAATATACAATAGTTTTTGGATTAAAA
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Coding sequence (CDS) from alignment at scaffold_4:141672..142549-

>mRNA_1841 ID=mRNA_1841|Name=jgi.p|Nanoce1779_2|578132|organism=Nannochloropsis oceanica|type=CDS|length=345bp|location=Sequence derived from alignment at scaffold_4:141672..142549- (Nannochloropsis oceanica)
ATGGCGTTGGTTTTGATCAACAAGAGTACGGGTGGGGTCCAGTTGGAGGG
GATGCAATTCAGGGATGGATCGGAGGTACATGTGATCGAGAGTCACTTGT
TTGATACGGATTCGCGTGTGCTGGCGCCGGGTGGGGCGGTATTGATTTTC
GCATGGTCCCATATTCCGACTGTGGTGAAGCAGGCGCATATCGCCCTACG
AATGGAGACGACGGCGTTCAAAGGGGAATTTACTGATAAGTCAGCCTCGT
TGCAGGCGCGGCCGGGGGGTGACGTGTCATTTGTGGAGAAAACCCGAAAG
TCGACGTATGTCAAGTATGTGGTCGTGGTACGAGAGCAGCGATGA
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Synonyms
Publications