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Properties
| Property Name | Value |
|---|
| TranscriptId | 551495 |
| Track | FilteredModels2 |
| ProteinId | 551409 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_4 | supercontig | scaffold_4:138612..141376 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1840 ID=mRNA_1840|Name=jgi.p|Nanoce1779_2|551409|organism=Nannochloropsis oceanica|type=mRNA|length=2445bp
AGCAGCGTGCATCCGATCGCCCCGTCTGTGTGACTCTGGACGACTCGCTG
CTTCCGCTGTAAGATTCACTAGCCTCCCCTATGCCCGCAGCAGCCGCCGC
AACACCCTCTACACCAATCTTGACATTATCCAAAAGAAGACCAGCTCCAA
CAACACTACAAGAATTCTAAGACCCCGAAAAGCCAAGAGAAACCTAGCCT
ACTAAGTCTGCCACAGCTGCCACGCCAAGCACCACATCGGTCACCATGGA
TAACGTCACGGAAAAGCTGCCGACCGCCCTCAGCCTCAAAAAAAACGAAT
ACGATATCAATAAAGAAGTAGGCCCGTCCTCTGCCTCCTCTCCTCCTATA
ACCAATCTAAAGGAGCTTGTGCACGAGAGCGACGATGTTGACCGCTTTCT
CCCCGCGGATCTTGAAGATCATGCTGTTGACGATGAACATCCCACCTGCA
TGCCTTCGGAGATGGATGACGAGGATGTTCGTGTGGCAATGATTGGGAAC
GTGGACGCCGGCAAGTCTACCCTCATCGGTGTGCTCACCAACGCCATGCT
TGACGACGGCCGCGGCTCCGCCCGTTCCCTCATCCTCAAGCACCGTCATG
AGCAAGAGAATGGCCGCACATCCGCCGTCACCATCGAACTCCTGGGCTAC
CGTAACTCAGGCGAACAAGTCCTCCCTTCCGGCCGCACCCAAACTAACCG
CTGGCAAGAAATCGTGCGATCCTCAGGACGGACCGTCACCCTCATTGACC
TCTGCGGCCACGAACGCTATTTGAAAACAACCATCTTTGGACTCACAGGC
TTGCTGCCCGACTTTGCGTTGCTGCTGGTAGGGAGCAACATGGGTGTCAC
CGTCATGACCCGGGAGCACATCTCCATTGCCTGCGCCCTCTCCATCCCCC
TCGCCGTGGTGCTCACCAAAGTCGACATTGCTCCGGAACCTGTCCTGAAG
CAAACCCGTCAAACCCTTGCCCGATACCTCCGCAAGAACAACAAGCTCCC
GTACCCTATCAAGGACCTTTCGCAGGTAGAGGCGGCGGCTGACTCCCTCG
CCTCGGATCGCGTCACTCCCGTCTTTGCCATCTCCAGCGTCACCGGCCAA
GGGTTGGATCTTCTCCGAGCCTTTGTGTCGCGCTTGCGTCGCACCTCCCC
ACTCTACCAAGGCCTTTCCTCCGCCCCTTCACTCTCGTCCTGCCCTGATG
CGCCCTCCATTCATATCCCTATCGACGGGGTCTACGAAGTGAAAGGCGTG
GGGTTGGTAGTGGGAGGAACGATCTTGCGGGGACATGTGCGACCGAACCA
AAGCCTTCTCCTGGGCCCTGATCGAGGTGGGGCGTTCGTTCCTCTGTCTG
TGCGCAGCATTGAATGTCGACGACAGCCGGTCAAGGAAGCGAAGCAAGGG
ATGAGCATCACGTTTGCCGTGCGGTCTCTCAATAAACGAGTAACCTTGAG
AAGGTCTTACTTCAGAAAGGGAATGGTACTGGTCGGAGCGGAGGACAGAC
CGAGGCCAGTGAGGGATTTTCAGGCGTCCGTGGTAATTTTGCACCATGCC
ACGACGATGGCGAAGGGGTATGAACCTGTGCTACACATGGGAACCGTCAG
ACAAGCGGCGGAAATGACGGAGATATTAGGCGGGGAAGATGCGCTGCGGA
CGGGAAGTCGGGCGGAGGTGTTGTTTCATTTCAGGTATTTTGCCGAGTTC
TTGGTCGTCGGATCCACGTTTTTGTTTCGAGAAGGCCGGGCGAAGGGCAT
CGGCAAAGTCTCCAAGTTGCTTTATCCGTCAGCCCAACCACCACCACCAG
CAGCAGCAGCAACAACAACAGCAATAGCGGCAGCGGGCACCGGGATAGGG
TCGTCTGCCTCTTCGACGTCGACCTCGTCCTCATCGCCAGCAGGAGTGTC
AGCTGCAGGAGCAGCAGGAGCAGCAGGAGGAACAGTGGGTGTGACAGGGG
CGGCGAGGGCAGGAGAGGTAGAGATGGCGGCCGGTGTAGCAGTGCATGCG
TGAGGAGGGAAAGGGAACATGTGAAGGGGGGGGGTGTCTATTCGAGTGAG
TGCTTAGTGTGAACGTATCAGACAAATGTGCTCTTGTTGCTCTAAGTGGT
GTCGTTGAAAGCATTTAAACTACTTGTGTGGAAAGGAAAAGCAAAATGCA
AAAAAGAGAGAAGTATAAATACATATGCACGAGACGACCCTTTAAAAGAT
AAGACAAAAAGAGAAAGAGGAGTGTAAGAAGGAAGCTTTCGAATGATTAG
AAAGACGGGCCAATTGCGAGTGCTGAGCATTATTCAATTTTCTCACAAGC
ATGCTTTTGGAAAGTGACCGTGGAGGGTGAGAAGAAGAGAAGAACGAAAG
GAAAGAGGGAGGAGGGAGATTGCTATATATATATAGACAAATCAAAGGAA
AAGGATGCTACACCACTAACAAGAAGAAGAATTCGACAAATAATA back to topprotein sequence of jgi.p|Nanoce1779_2|551409 >mRNA_1840-protein ID=mRNA_1840-protein|Name=jgi.p|Nanoce1779_2|551409|organism=Nannochloropsis oceanica|type=polypeptide|length=586bp
MDNVTEKLPTALSLKKNEYDINKEVGPSSASSPPITNLKELVHESDDVDR
FLPADLEDHAVDDEHPTCMPSEMDDEDVRVAMIGNVDAGKSTLIGVLTNA
MLDDGRGSARSLILKHRHEQENGRTSAVTIELLGYRNSGEQVLPSGRTQT
NRWQEIVRSSGRTVTLIDLCGHERYLKTTIFGLTGLLPDFALLLVGSNMG
VTVMTREHISIACALSIPLAVVLTKVDIAPEPVLKQTRQTLARYLRKNNK
LPYPIKDLSQVEAAADSLASDRVTPVFAISSVTGQGLDLLRAFVSRLRRT
SPLYQGLSSAPSLSSCPDAPSIHIPIDGVYEVKGVGLVVGGTILRGHVRP
NQSLLLGPDRGGAFVPLSVRSIECRRQPVKEAKQGMSITFAVRSLNKRVT
LRRSYFRKGMVLVGAEDRPRPVRDFQASVVILHHATTMAKGYEPVLHMGT
VRQAAEMTEILGGEDALRTGSRAEVLFHFRYFAEFLVVGSTFLFREGRAK
GIGKVSKLLYPSAQPPPPAAAATTTAIAAAGTGIGSSASSTSTSSSSPAG
VSAAGAAGAAGGTVGVTGAARAGEVEMAAGVAVHA* back to topmRNA from alignment at scaffold_4:138612..141376- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1840 ID=mRNA_1840|Name=jgi.p|Nanoce1779_2|551409|organism=Nannochloropsis oceanica|type=mRNA|length=2765bp|location=Sequence derived from alignment at scaffold_4:138612..141376- (Nannochloropsis oceanica)
AGCAGCGTGCATCCGATCGCCCCGTCTGTGTGACTCTGGACGACTCGCTG
CTTCCGCTGTAAGATTCACTAGCCTCCCCTATGCCCGCAGCAGCCGCCGC
AACACCCTCTACACCAATCTTGACATTATCCAAAAGAAGACCAGCTCCAA
CAACACTACAAGAATTCTAAGGTATGTCTCATTATCGACAAGTGTGCGAA
GTACAGGCGGGTCAACGTAGGAGTGGTGTCGAGGGGCCTGGTAAACTCGC
CCACAGTCGCGGCTTCCTGTCTTTTATCTGACTCTCGCCTTGTTGTCATA
CACAGACCCCGAAAAGCCAAGAGAAACCTAGCCTACTAAGTCTGCCACAG
CTGCCACGCCAAGCACCACATCGGTCACCATGGATAACGTCACGGAAAAG
CTGCCGACCGCCCTCAGCCTCAAAAAAAACGAATACGATATCAATAAAGA
AGTAGGCCCGTCCTCTGCCTCCTCTCCTCCTATAACCAATCTAAAGGAGC
TTGTGCACGAGAGCGACGATGTTGACCGCTTTCTCCCCGCGGATCTTGAA
GATCATGCTGTTGACGATGAACATCCCACCTGCATGCCTTCGGAGATGGA
TGACGAGGATGTTCGTGTGGCAATGGTAAGTAAACCCTTTTTGTCATGTG
TCATTCCAGATGTCGCGCTTTTTTTTCTCCAGTACCTTCGTGGACAGTAT
CACTTCCCGCAAAATCACAAGTGAATCTGTAAATGATAAACATGATAAAC
AGGCATATAATCTTAGCGCTCGAATCTCGGTACCCGACATCAATTTACAA
AAAAACTACAGATTGGGAACGTGGACGCCGGCAAGTCTACCCTCATCGGT
GTGCTCACCAACGCCATGCTTGACGACGGCCGCGGCTCCGCCCGTTCCCT
CATCCTCAAGCACCGTCATGAGCAAGAGAATGGCCGCACATCCGCCGTCA
CCATCGAACTCCTGGGCTACCGTAACTCAGGCGAACAAGTCCTCCCTTCC
GGCCGCACCCAAACTAACCGCTGGCAAGAAATCGTGCGATCCTCAGGACG
GACCGTCACCCTCATTGACCTCTGCGGCCACGAACGCTATTTGAAAACAA
CCATCTTTGGACTCACAGGCTTGCTGCCCGACTTTGCGTTGCTGCTGGTA
GGGAGCAACATGGGTGTCACCGTCATGACCCGGGAGCACATCTCCATTGC
CTGCGCCCTCTCCATCCCCCTCGCCGTGGTGCTCACCAAAGTCGACATTG
CTCCGGAACCTGTCCTGAAGCAAACCCGTCAAACCCTTGCCCGATACCTC
CGCAAGAACAACAAGCTCCCGTACCCTATCAAGGACCTTTCGCAGGTAGA
GGCGGCGGCTGACTCCCTCGCCTCGGATCGCGTCACTCCCGTCTTTGCCA
TCTCCAGCGTCACCGGCCAAGGGTTGGATCTTCTCCGAGCCTTTGTGTCG
CGCTTGCGTCGCACCTCCCCACTCTACCAAGGCCTTTCCTCCGCCCCTTC
ACTCTCGTCCTGCCCTGATGCGCCCTCCATTCATATCCCTATCGACGGGG
TCTACGAAGTGAAAGGCGTGGGGTTGGTAGTGGGAGGAACGATCTTGCGG
GGACATGTGCGACCGAACCAAAGCCTTCTCCTGGGCCCTGATCGAGGTGG
GGCGTTCGTTCCTCTGTCTGTGCGCAGCATTGAATGTCGACGACAGCCGG
TCAAGGAAGCGAAGCAAGGGATGAGCATCACGTTTGCCGTGCGGTCTCTC
AATAAACGAGTAACCTTGAGAAGGTCTTACTTCAGAAAGGGAATGGTACT
GGTCGGAGCGGAGGACAGACCGAGGCCAGTGAGGGATTTTCAGGCGTCCG
TGGTAATTTTGCACCATGCCACGACGATGGCGAAGGGGTATGAACCTGTG
CTACACATGGGAACCGTCAGACAAGCGGCGGAAATGACGGAGATATTAGG
CGGGGAAGATGCGCTGCGGACGGGAAGTCGGGCGGAGGTGTTGTTTCATT
TCAGGTATTTTGCCGAGTTCTTGGTCGTCGGATCCACGTTTTTGTTTCGA
GAAGGCCGGGCGAAGGGCATCGGCAAAGTCTCCAAGTTGCTTTATCCGTC
AGCCCAACCACCACCACCAGCAGCAGCAGCAACAACAACAGCAATAGCGG
CAGCGGGCACCGGGATAGGGTCGTCTGCCTCTTCGACGTCGACCTCGTCC
TCATCGCCAGCAGGAGTGTCAGCTGCAGGAGCAGCAGGAGCAGCAGGAGG
AACAGTGGGTGTGACAGGGGCGGCGAGGGCAGGAGAGGTAGAGATGGCGG
CCGGTGTAGCAGTGCATGCGTGAGGAGGGAAAGGGAACATGTGAAGGGGG
GGGGTGTCTATTCGAGTGAGTGCTTAGTGTGAACGTATCAGACAAATGTG
CTCTTGTTGCTCTAAGTGGTGTCGTTGAAAGCATTTAAACTACTTGTGTG
GAAAGGAAAAGCAAAATGCAAAAAAGAGAGAAGTATAAATACATATGCAC
GAGACGACCCTTTAAAAGATAAGACAAAAAGAGAAAGAGGAGTGTAAGAA
GGAAGCTTTCGAATGATTAGAAAGACGGGCCAATTGCGAGTGCTGAGCAT
TATTCAATTTTCTCACAAGCATGCTTTTGGAAAGTGACCGTGGAGGGTGA
GAAGAAGAGAAGAACGAAAGGAAAGAGGGAGGAGGGAGATTGCTATATAT
ATATAGACAAATCAAAGGAAAAGGATGCTACACCACTAACAAGAAGAAGA
ATTCGACAAATAATA back to topCoding sequence (CDS) from alignment at scaffold_4:138612..141376- >mRNA_1840 ID=mRNA_1840|Name=jgi.p|Nanoce1779_2|551409|organism=Nannochloropsis oceanica|type=CDS|length=3516bp|location=Sequence derived from alignment at scaffold_4:138612..141376- (Nannochloropsis oceanica)
ATTGGGAACGTGGACGCCGGCAAGTCTACCCTCATCGGTGTGCTCACCAA
CGCCATGCTTGACGACGGCCGCGGCTCCGCCCGTTCCCTCATCCTCAAGC
ACCGTCATGAGCAAGAGAATGGCCGCACATCCGCCGTCACCATCGAACTC
CTGGGCTACCGTAACTCAGGCGAACAAGTCCTCCCTTCCGGCCGCACCCA
AACTAACCGCTGGCAAGAAATCGTGCGATCCTCAGGACGGACCGTCACCC
TCATTGACCTCTGCGGCCACGAACGCTATTTGAAAACAACCATCTTTGGA
CTCACAGGCTTGCTGCCCGACTTTGCGTTGCTGCTGGTAGGGAGCAACAT
GGGTGTCACCGTCATGACCCGGGAGCACATCTCCATTGCCTGCGCCCTCT
CCATCCCCCTCGCCGTGGTGCTCACCAAAGTCGACATTGCTCCGGAACCT
GTCCTGAAGCAAACCCGTCAAACCCTTGCCCGATACCTCCGCAAGAACAA
CAAGCTCCCGTACCCTATCAAGGACCTTTCGCAGGTAGAGGCGGCGGCTG
ACTCCCTCGCCTCGGATCGCGTCACTCCCGTCTTTGCCATCTCCAGCGTC
ACCGGCCAAGGGTTGGATCTTCTCCGAGCCTTTGTGTCGCGCTTGCGTCG
CACCTCCCCACTCTACCAAGGCCTTTCCTCCGCCCCTTCACTCTCGTCCT
GCCCTGATGCGCCCTCCATTCATATCCCTATCGACGGGGTCTACGAAGTG
AAAGGCGTGGGGTTGGTAGTGGGAGGAACGATCTTGCGGGGACATGTGCG
ACCGAACCAAAGCCTTCTCCTGGGCCCTGATCGAGGTGGGGCGTTCGTTC
CTCTGTCTGTGCGCAGCATTGAATGTCGACGACAGCCGGTCAAGGAAGCG
AAGCAAGGGATGAGCATCACGTTTGCCGTGCGGTCTCTCAATAAACGAGT
AACCTTGAGAAGGTCTTACTTCAGAAAGGGAATGGTACTGGTCGGAGCGG
AGGACAGACCGAGGCCAGTGAGGGATTTTCAGGCGTCCGTGGTAATTTTG
CACCATGCCACGACGATGGCGAAGGGGTATGAACCTGTGCTACACATGGG
AACCGTCAGACAAGCGGCGGAAATGACGGAGATATTAGGCGGGGAAGATG
CGCTGCGGACGGGAAGTCGGGCGGAGGTGTTGTTTCATTTCAGGTATTTT
GCCGAGTTCTTGGTCGTCGGATCCACGTTTTTGTTTCGAGAAGGCCGGGC
GAAGGGCATCGGCAAAGTCTCCAAGTTGCTTTATCCGTCAGCCCAACCAC
CACCACCAGCAGCAGCAGCAACAACAACAGCAATAGCGGCAGCGGGCACC
GGGATAGGGTCGTCTGCCTCTTCGACGTCGACCTCGTCCTCATCGCCAGC
AGGAGTGTCAGCTGCAGGAGCAGCAGGAGCAGCAGGAGGAACAGTGGGTG
TGACAGGGGCGGCGAGGGCAGGAGAGGTAGAGATGGCGGCCGGTGTAGCA
GTGCATGCGTGAATGGATAACGTCACGGAAAAGCTGCCGACCGCCCTCAG
CCTCAAAAAAAACGAATACGATATCAATAAAGAAGTAGGCCCGTCCTCTG
CCTCCTCTCCTCCTATAACCAATCTAAAGGAGCTTGTGCACGAGAGCGAC
GATGTTGACCGCTTTCTCCCCGCGGATCTTGAAGATCATGCTGTTGACGA
TGAACATCCCACCTGCATGCCTTCGGAGATGGATGACGAGGATGTTCGTG
TGGCAATGATTGGGAACGTGGACGCCGGCAAGTCTACCCTCATCGGTGTG
CTCACCAACGCCATGCTTGACGACGGCCGCGGCTCCGCCCGTTCCCTCAT
CCTCAAGCACCGTCATGAGCAAGAGAATGGCCGCACATCCGCCGTCACCA
TCGAACTCCTGGGCTACCGTAACTCAGGCGAACAAGTCCTCCCTTCCGGC
CGCACCCAAACTAACCGCTGGCAAGAAATCGTGCGATCCTCAGGACGGAC
CGTCACCCTCATTGACCTCTGCGGCCACGAACGCTATTTGAAAACAACCA
TCTTTGGACTCACAGGCTTGCTGCCCGACTTTGCGTTGCTGCTGGTAGGG
AGCAACATGGGTGTCACCGTCATGACCCGGGAGCACATCTCCATTGCCTG
CGCCCTCTCCATCCCCCTCGCCGTGGTGCTCACCAAAGTCGACATTGCTC
CGGAACCTGTCCTGAAGCAAACCCGTCAAACCCTTGCCCGATACCTCCGC
AAGAACAACAAGCTCCCGTACCCTATCAAGGACCTTTCGCAGGTAGAGGC
GGCGGCTGACTCCCTCGCCTCGGATCGCGTCACTCCCGTCTTTGCCATCT
CCAGCGTCACCGGCCAAGGGTTGGATCTTCTCCGAGCCTTTGTGTCGCGC
TTGCGTCGCACCTCCCCACTCTACCAAGGCCTTTCCTCCGCCCCTTCACT
CTCGTCCTGCCCTGATGCGCCCTCCATTCATATCCCTATCGACGGGGTCT
ACGAAGTGAAAGGCGTGGGGTTGGTAGTGGGAGGAACGATCTTGCGGGGA
CATGTGCGACCGAACCAAAGCCTTCTCCTGGGCCCTGATCGAGGTGGGGC
GTTCGTTCCTCTGTCTGTGCGCAGCATTGAATGTCGACGACAGCCGGTCA
AGGAAGCGAAGCAAGGGATGAGCATCACGTTTGCCGTGCGGTCTCTCAAT
AAACGAGTAACCTTGAGAAGGTCTTACTTCAGAAAGGGAATGGTACTGGT
CGGAGCGGAGGACAGACCGAGGCCAGTGAGGGATTTTCAGGCGTCCGTGG
TAATTTTGCACCATGCCACGACGATGGCGAAGGGGTATGAACCTGTGCTA
CACATGGGAACCGTCAGACAAGCGGCGGAAATGACGGAGATATTAGGCGG
GGAAGATGCGCTGCGGACGGGAAGTCGGGCGGAGGTGTTGTTTCATTTCA
GGTATTTTGCCGAGTTCTTGGTCGTCGGATCCACGTTTTTGTTTCGAGAA
GGCCGGGCGAAGGGCATCGGCAAAGTCTCCAAGTTGCTTTATCCGTCAGC
CCAACCACCACCACCAGCAGCAGCAGCAACAACAACAGCAATAGCGGCAG
CGGGCACCGGGATAGGGTCGTCTGCCTCTTCGACGTCGACCTCGTCCTCA
TCGCCAGCAGGAGTGTCAGCTGCAGGAGCAGCAGGAGCAGCAGGAGGAAC
AGTGGGTGTGACAGGGGCGGCGAGGGCAGGAGAGGTAGAGATGGCGGCCG
GTGTAGCAGTGCATGCGTGAATGGATAACGTCACGGAAAAGCTGCCGACC
GCCCTCAGCCTCAAAAAAAACGAATACGATATCAATAAAGAAGTAGGCCC
GTCCTCTGCCTCCTCTCCTCCTATAACCAATCTAAAGGAGCTTGTGCACG
AGAGCGACGATGTTGACCGCTTTCTCCCCGCGGATCTTGAAGATCATGCT
GTTGACGATGAACATCCCACCTGCATGCCTTCGGAGATGGATGACGAGGA
TGTTCGTGTGGCAATG back to top
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