jgi.p|Nanoce1779_2|576477, mRNA_184 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576477
Unique Name	mRNA_184
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1713
Alignment location	scaffold_3:467188..469099 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	576563
Track	FilteredModels2
ProteinId	576477

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:467188..469099 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576477	gene_184	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576477	mRNA_184-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_184	CDS_184	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:467188..469099+
coding sequence from alignment at scaffold_3:467188..469099+

mRNA sequence

>mRNA_184 ID=mRNA_184|Name=jgi.p|Nanoce1779_2|576477|organism=Nannochloropsis oceanica|type=mRNA|length=1713bp
CAGGCTACATTTAAGACAGCCATGTCAGATGTCAGGCGGCTCAGTGCCAA
GGGCGCGGCTGGAGGACTGACCATAGATACTGATGCCATGCCACCCGTCA
TTGTCCCACCTATCAACGTCGCTGCTGCTTCCCCTACCGGACCAAATGGA
ACGCCGAGAAACTGGTTTGGAAAGACGTCGTCAGGTCTCGCAGATCCCCG
CTCCTGGCTGCAGTCACCTCGCAAATGGGCAAACAATCGAACCCCTACGA
ATCAAGGTGGTAACGCCACGCCCAACACAAAAAAAATGGTTGCATATTTC
AATTCGTTGCCCCATTCGGAAAAATTGATGAGCAGACAGGAAGAGGAGGA
TGGATTTAAGATTGGCAACAGCAGCGGTAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGTAGCAGCAGCAGTACCACCACCGCCACCATAACCGCTGCTTCT
ATCCCCAGGGCGCTGGCCAATCTCATGCACCAAACGGACAAGGACGGTAA
ATCCCAGCACGTAGCTCTCTCACCATCTCCTCTCCATAAGGAACAACACG
AGCAAGACGAGCAGGCACCTGTCGCGGGGCTTTCCCTCTTAAGTCGCCTA
TTGCGTTCAATACACCTCTCGGACAACGAGACCGCTACTTCGATTCCTAC
CGGTACTTCCCCCCCTTCCCCCACTGATGGGACGAAGAAGCAGTCCATCA
AGCCTTTATCGTCTCCAACCTATTCTTTGGGCAGCATCAAGCGAAACGGA
AATGGTCTCTTAGGCGAGCTGCACCCAGATGATGTGGGTAAGAAATGCCT
GGTCCTCGACTTGGATGAGACATTGGCCCACTCATCTTTTCAGCCTGTGG
AAGCCGCAGACTTCGTTATTCCAATTGTAATTGAGGGGACACAGCACCAA
GTGTACGTGTTAAAACGCCCGGGGGTCGATGAATTTATGCGGCGCGTGGC
AAAGGATTACGAGATTGTAATTTTTACAGCTTCCCTCGCTTTGTACGCAG
ATCCTTTGCTTGATCAATTGGATTTACACAATGTGATCCGGCATCGGCTG
TATCGGGAGAGTTGCACATTCTTTCAAGGGTCCTATGTGAAGGACTTGAC
GAAGCTAGGACGGGATGTGCGTCAGTGTATTTTGGTTGATAATAGCCCAT
TGTCTTACATGTTTCAGCCAGAAAATGCGATTGGGTGTAGCTCGTATATT
GACGCTACGATGGACAAGGAGTTGGATGTGATTGCGGCTTTTTTGGAGGA
TGTGAGAGATTGCGAGGATGTGAGGGAGCATTGTCGAGGTTGGCGGCAGT
GGGGGGCGTATGAAAGGAAGGGGAAGGCGTTGGTGGAGAAGAGGAAGGGG
GTTATTGCAGGATGAAAGCAAGATAACTCGTGGGCATGCGGAAGGGGATA
GATTTAGCACAGCACAAACGCTGAGCGTCAGGAGATGTAAGAGTGCGGCG
CAAGAGGAAGAAGAAGATAGATAGGGTAACAAATTAAGTGAGCAGCGGAC
AAAAGAGAAAGCATGGGACGAGTAGGTGGAGAAACTAGGAGAGAAATTAG
GAAGAAAAAAAAGAATGAAGAGGATGCGTGCGTATGTGAATAATTGCATG
TCATTTCGGTGTGTATGAGGGCACTTTAAATAGAAAAGAATTATAAATAT
ATATATATACACACACACACACACCATTCAGCTTGATAGATAGCGATCAA
CAAAAGCGTGAGA

protein sequence of jgi.p|Nanoce1779_2|576477

>mRNA_184-protein ID=mRNA_184-protein|Name=jgi.p|Nanoce1779_2|576477|organism=Nannochloropsis oceanica|type=polypeptide|length=448bp
MSDVRRLSAKGAAGGLTIDTDAMPPVIVPPINVAAASPTGPNGTPRNWFG
KTSSGLADPRSWLQSPRKWANNRTPTNQGGNATPNTKKMVAYFNSLPHSE
KLMSRQEEEDGFKIGNSSGSSSSSSSSSSSSSSTTTATITAASIPRALAN
LMHQTDKDGKSQHVALSPSPLHKEQHEQDEQAPVAGLSLLSRLLRSIHLS
DNETATSIPTGTSPPSPTDGTKKQSIKPLSSPTYSLGSIKRNGNGLLGEL
HPDDVGKKCLVLDLDETLAHSSFQPVEAADFVIPIVIEGTQHQVYVLKRP
GVDEFMRRVAKDYEIVIFTASLALYADPLLDQLDLHNVIRHRLYRESCTF
FQGSYVKDLTKLGRDVRQCILVDNSPLSYMFQPENAIGCSSYIDATMDKE
LDVIAAFLEDVRDCEDVREHCRGWRQWGAYERKGKALVEKRKGVIAG*

mRNA from alignment at scaffold_3:467188..469099+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_184 ID=mRNA_184|Name=jgi.p|Nanoce1779_2|576477|organism=Nannochloropsis oceanica|type=mRNA|length=1912bp|location=Sequence derived from alignment at scaffold_3:467188..469099+ (Nannochloropsis oceanica)
CAGGCTACATTTAAGACAGCCATGTCAGATGTCAGGCGGCTCAGTGCCAA
GGGTAAGTGTCTGCTGCGCCCCTCATCTATCTCCCTTTGTCCCTCATGCA
GGCAAGGATCCACCTCTCTCACTCCCCTGCCTCTTCCACACTCCTCTTTG
CTTGACCCCCACTCCCTTCACTCACACTCCCATGGTTTATACCCTATGCT
TTTTAATTTTCTTTGCTCCACTTACTCAGAATCATACACACAAACACACA
GGCGCGGCTGGAGGACTGACCATAGATACTGATGCCATGCCACCCGTCAT
TGTCCCACCTATCAACGTCGCTGCTGCTTCCCCTACCGGACCAAATGGAA
CGCCGAGAAACTGGTTTGGAAAGACGTCGTCAGGTCTCGCAGATCCCCGC
TCCTGGCTGCAGTCACCTCGCAAATGGGCAAACAATCGAACCCCTACGAA
TCAAGGTGGTAACGCCACGCCCAACACAAAAAAAATGGTTGCATATTTCA
ATTCGTTGCCCCATTCGGAAAAATTGATGAGCAGACAGGAAGAGGAGGAT
GGATTTAAGATTGGCAACAGCAGCGGTAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGTAGCAGCAGCAGTACCACCACCGCCACCATAACCGCTGCTTCTA
TCCCCAGGGCGCTGGCCAATCTCATGCACCAAACGGACAAGGACGGTAAA
TCCCAGCACGTAGCTCTCTCACCATCTCCTCTCCATAAGGAACAACACGA
GCAAGACGAGCAGGCACCTGTCGCGGGGCTTTCCCTCTTAAGTCGCCTAT
TGCGTTCAATACACCTCTCGGACAACGAGACCGCTACTTCGATTCCTACC
GGTACTTCCCCCCCTTCCCCCACTGATGGGACGAAGAAGCAGTCCATCAA
GCCTTTATCGTCTCCAACCTATTCTTTGGGCAGCATCAAGCGAAACGGAA
ATGGTCTCTTAGGCGAGCTGCACCCAGATGATGTGGGTAAGAAATGCCTG
GTCCTCGACTTGGATGAGACATTGGCCCACTCATCTTTTCAGCCTGTGGA
AGCCGCAGACTTCGTTATTCCAATTGTAATTGAGGGGACACAGCACCAAG
TGTACGTGTTAAAACGCCCGGGGGTCGATGAATTTATGCGGCGCGTGGCA
AAGGATTACGAGATTGTAATTTTTACAGCTTCCCTCGCTTTGTACGCAGA
TCCTTTGCTTGATCAATTGGATTTACACAATGTGATCCGGCATCGGCTGT
ATCGGGAGAGTTGCACATTCTTTCAAGGGTCCTATGTGAAGGACTTGACG
AAGCTAGGACGGGATGTGCGTCAGTGTATTTTGGTTGATAATAGCCCATT
GTCTTACATGTTTCAGCCAGAAAATGCGATTGGGTGTAGCTCGTATATTG
ACGCTACGATGGACAAGGAGTTGGATGTGATTGCGGCTTTTTTGGAGGAT
GTGAGAGATTGCGAGGATGTGAGGGAGCATTGTCGAGGTTGGCGGCAGTG
GGGGGCGTATGAAAGGAAGGGGAAGGCGTTGGTGGAGAAGAGGAAGGGGG
TTATTGCAGGATGAAAGCAAGATAACTCGTGGGCATGCGGAAGGGGATAG
ATTTAGCACAGCACAAACGCTGAGCGTCAGGAGATGTAAGAGTGCGGCGC
AAGAGGAAGAAGAAGATAGATAGGGTAACAAATTAAGTGAGCAGCGGACA
AAAGAGAAAGCATGGGACGAGTAGGTGGAGAAACTAGGAGAGAAATTAGG
AAGAAAAAAAAGAATGAAGAGGATGCGTGCGTATGTGAATAATTGCATGT
CATTTCGGTGTGTATGAGGGCACTTTAAATAGAAAAGAATTATAAATATA
TATATATACACACACACACACACCATTCAGCTTGATAGATAGCGATCAAC
AAAAGCGTGAGA

Coding sequence (CDS) from alignment at scaffold_3:467188..469099+

>mRNA_184 ID=mRNA_184|Name=jgi.p|Nanoce1779_2|576477|organism=Nannochloropsis oceanica|type=CDS|length=2688bp|location=Sequence derived from alignment at scaffold_3:467188..469099+ (Nannochloropsis oceanica)
ATGTCAGATGTCAGGCGGCTCAGTGCCAAGGGCGCGGCTGGAGGACTGAC
CATAGATACTGATGCCATGCCACCCGTCATTGTCCCACCTATCAACGTCG
CTGCTGCTTCCCCTACCGGACCAAATGGAACGCCGAGAAACTGGTTTGGA
AAGACGTCGTCAGGTCTCGCAGATCCCCGCTCCTGGCTGCAGTCACCTCG
CAAATGGGCAAACAATCGAACCCCTACGAATCAAGGTGGTAACGCCACGC
CCAACACAAAAAAAATGGTTGCATATTTCAATTCGTTGCCCCATTCGGAA
AAATTGATGAGCAGACAGGAAGAGGAGGATGGATTTAAGATTGGCAACAG
CAGCGGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTAGCAGCAGCAGTA
CCACCACCGCCACCATAACCGCTGCTTCTATCCCCAGGGCGCTGGCCAAT
CTCATGCACCAAACGGACAAGGACGGTAAATCCCAGCACGTAGCTCTCTC
ACCATCTCCTCTCCATAAGGAACAACACGAGCAAGACGAGCAGGCACCTG
TCGCGGGGCTTTCCCTCTTAAGTCGCCTATTGCGTTCAATACACCTCTCG
GACAACGAGACCGCTACTTCGATTCCTACCGGTACTTCCCCCCCTTCCCC
CACTGATGGGACGAAGAAGCAGTCCATCAAGCCTTTATCGTCTCCAACCT
ATTCTTTGGGCAGCATCAAGCGAAACGGAAATGGTCTCTTAGGCGAGCTG
CACCCAGATGATGTGGGTAAGAAATGCCTGGTCCTCGACTTGGATGAGAC
ATTGGCCCACTCATCTTTTCAGCCTGTGGAAGCCGCAGACTTCGTTATTC
CAATTGTAATTGAGGGGACACAGCACCAAGTGTACGTGTTAAAACGCCCG
GGGGTCGATGAATTTATGCGGCGCGTGGCAAAGGATTACGAGATTGTAAT
TTTTACAGCTTCCCTCGCTTTGTACGCAGATCCTTTGCTTGATCAATTGG
ATTTACACAATGTGATCCGGCATCGGCTGTATCGGGAGAGTTGCACATTC
TTTCAAGGGTCCTATGTGAAGGACTTGACGAAGCTAGGACGGGATGTGCG
TCAGTGTATTTTGGTTGATAATAGCCCATTGTCTTACATGTTTCAGCCAG
AAAATGCGATTGGGTGTAGCTCGTATATTGACGCTACGATGGACAAGGAG
TTGGATGTGATTGCGGCTTTTTTGGAGGATGTGAGAGATTGCGAGGATGT
GAGGGAGCATTGTCGAGGTTGGCGGCAGTGGGGGGCGTATGAAAGGAAGG
GGAAGGCGTTGGTGGAGAAGAGGAAGGGGGTTATTGCAGGATGAATGTCA
GATGTCAGGCGGCTCAGTGCCAAGGGCGCGGCTGGAGGACTGACCATAGA
TACTGATGCCATGCCACCCGTCATTGTCCCACCTATCAACGTCGCTGCTG
CTTCCCCTACCGGACCAAATGGAACGCCGAGAAACTGGTTTGGAAAGACG
TCGTCAGGTCTCGCAGATCCCCGCTCCTGGCTGCAGTCACCTCGCAAATG
GGCAAACAATCGAACCCCTACGAATCAAGGTGGTAACGCCACGCCCAACA
CAAAAAAAATGGTTGCATATTTCAATTCGTTGCCCCATTCGGAAAAATTG
ATGAGCAGACAGGAAGAGGAGGATGGATTTAAGATTGGCAACAGCAGCGG
TAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTAGCAGCAGCAGTACCACCA
CCGCCACCATAACCGCTGCTTCTATCCCCAGGGCGCTGGCCAATCTCATG
CACCAAACGGACAAGGACGGTAAATCCCAGCACGTAGCTCTCTCACCATC
TCCTCTCCATAAGGAACAACACGAGCAAGACGAGCAGGCACCTGTCGCGG
GGCTTTCCCTCTTAAGTCGCCTATTGCGTTCAATACACCTCTCGGACAAC
GAGACCGCTACTTCGATTCCTACCGGTACTTCCCCCCCTTCCCCCACTGA
TGGGACGAAGAAGCAGTCCATCAAGCCTTTATCGTCTCCAACCTATTCTT
TGGGCAGCATCAAGCGAAACGGAAATGGTCTCTTAGGCGAGCTGCACCCA
GATGATGTGGGTAAGAAATGCCTGGTCCTCGACTTGGATGAGACATTGGC
CCACTCATCTTTTCAGCCTGTGGAAGCCGCAGACTTCGTTATTCCAATTG
TAATTGAGGGGACACAGCACCAAGTGTACGTGTTAAAACGCCCGGGGGTC
GATGAATTTATGCGGCGCGTGGCAAAGGATTACGAGATTGTAATTTTTAC
AGCTTCCCTCGCTTTGTACGCAGATCCTTTGCTTGATCAATTGGATTTAC
ACAATGTGATCCGGCATCGGCTGTATCGGGAGAGTTGCACATTCTTTCAA
GGGTCCTATGTGAAGGACTTGACGAAGCTAGGACGGGATGTGCGTCAGTG
TATTTTGGTTGATAATAGCCCATTGTCTTACATGTTTCAGCCAGAAAATG
CGATTGGGTGTAGCTCGTATATTGACGCTACGATGGACAAGGAGTTGGAT
GTGATTGCGGCTTTTTTGGAGGATGTGAGAGATTGCGAGGATGTGAGGGA
GCATTGTCGAGGTTGGCGGCAGTGGGGGGCGTATGAAAGGAAGGGGAAGG
CGTTGGTGGAGAAGAGGAAGGGGGTTATTGCAGGATGA

Synonyms

Publications