jgi.p|Nanoce1779_2|578124, mRNA_1839 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578124
Unique NamemRNA_1839
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2094
Alignment locationscaffold_4:135200..137324 -

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Properties
Property NameValue
TranscriptId578210
TrackFilteredModels2
ProteinId578124
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:135200..137324 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578124gene_1839Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578124mRNA_1839-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1839CDS_1839Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1839 ID=mRNA_1839|Name=jgi.p|Nanoce1779_2|578124|organism=Nannochloropsis oceanica|type=mRNA|length=2094bp
GGAGGAGGGGGGGGAGGAGGGGGGGGGGAGGGGGAGGAGGAGGTGTTGGT
GGTGCCGAGTGTAAAAATGTAGGCGGGGCGGTAGAAACTGGGTGATGAAG
TGGAGGAGGGAAGGTAGGGGTAGGGGAAGCCCGGTGTTGATGTTGGTATT
GGTAGGAGGAAGTAGGTGGAGGGGAAGGAGGAAAGAAAGCGGGTGCTGTG
CGGGATAGCGACGCCGATGATGATGCACATGCAGAGGAGGCAGGCCCACT
CCCAGCTATCGAGCACTGTGCTGATTCCCAACGATGCTCCATCTGCTGAT
GTTCCTCCTGCTGCTGCGCCTGCTGCTCCTCCTCCTGCTGCTGCACCACC
TGTATGCTCATTGACCCTCCCGCGCGAGAAAAGGCCTTAGTAGGTCCGTG
GCTTCTCCTGCAAGTGTCATCGTCGGAATTGCCACAGGTGCGATTTCCCG
TGGTGATGGTCAAACTATTCATCCCCCTAGCCGCCGAGCATGGACGGCTG
CTGAAGCATGAGGGCGACCCCCTTCGAGAAGCGGGGCTCGTCCCCTTCCC
TTTACCCAGGCCCGTGCTTCGACCAGGGGAGGGGGCACGGTCAGCAATGC
CACCAAGAATAGACGTAGCGTAAGTGGAAGAGAAGGAGGTAGATGCCCAG
GAACGTGCATGCCTTTTTGGCTGCCGATGGTGCTGCTGTTGGTGCTGCTG
CTGGTGCCACGAATCACGGCCATGCTCAGCCCCAAATCCCGTTGTCATTC
CGCCACGGCCCGCTGCTCCCTTTGTGGCCCCTCCCTCCCCTCCTCGTCCC
TCCCCAAAACGCTCCGCCCAAACCGGTGTGCTCCTCTGACTGAGGGGCTG
CGGCTGCGATGGAGCCAAATGCCGGTTCATGTTCCTAATAAAAAACTCCG
AACCTCCTCCACCTCCTCCTCCCCTTCCTTCTCCCATTCCTCCCTCCATC
CCTCCCCCTTCTACTCCTCCTACAGATATGTACGACGGTGCCGGGGAAAT
ATTGCCCAAGGAACTCATACGCGAATGAGGTCGAGAAGACAAAGAGGAAG
AAAAGGCATCGTGGTGATGGTGGTACTGATGATGGTGTTGGTAGAAGGTG
GCAACAGCAGCACCTGCTGCAGCAGCACTAGCAGTGGTTGTAGAAGAAGA
TATCACAGGCACAGAAGGTATCGCGTACAGACGGGAAGGAGCCCGGCTTC
TACTGCTGGCGTTGGCGGCCCCGGTAGATGTGGTGGTAATGCCTGCTGCC
TTACTCGTAAGGCATGAGGAAGGCGAAGGGGGAGGAGCACCTGTGTACAT
ATGGGCGCTGCTGCCGCTCCCAGGCCTGCTACTCCTAGCAGCAGTAGCAG
TAGTAGTAGCAGCAGCAGAAGATGAGGGGATTAATGGTAAGGCCCGATAG
CGCAGGGGAGCGGAAGGACGGTGGGTGGGGTGATATACGGAGGGGGGAAG
CGAATAAACACTCAGGTTGGTATTGAATTGAGCGAAGCTACTGCTGCTGA
CCGGCACGTTGCTTCCCTCTCTCGTTCCTGTAAGAAGGACGAGGCGCGAG
CCGACGAATGCGAGACCTTTGGGGCGAGATAAGGGGGGGAGAGTGATGGT
AAAAAGGACATGGATTCCGACCGTGGAGGAGGAGGATGAGGAAGGGAGGG
AGAAAGAAGAGGAGGAACCACCCAGTCGAAGGAGGGTGATGGTGTCAGAA
GTGTGAGAGCCAATCGCAGCCAAGGCGTGTGTGGAGGGCTCGCCTGGTAA
GCCACTGCCGACGGGGCGCACGGCGAGGAGATCGGGCATGGCCACATGGG
GAACAGTGGTGGTCTCGATGTCGATGAGACGGGTGGAGATATCTCCGATA
TGGCTTCTCCTCATGCTACTCGGGTTACCGCTACTGATGGGACTATTACT
ATCATTTTTGTTGTAGCTATGATTGTTGTTGGTATAGGGAAAATGGATGA
GGTGGAGAGCCGAGCCAATGGAGCTTGTGCGCATGGATAACCTAGGGCCA
GCGATGGGACTAGGACTTGATCGTCGGGAGGATAAGCAAGGGCTGCTGCT
GCTGCTACTGCTACTGCGCCCATTCCATGCAGGGTTGGCAGGAG
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protein sequence of jgi.p|Nanoce1779_2|578124

>mRNA_1839-protein ID=mRNA_1839-protein|Name=jgi.p|Nanoce1779_2|578124|organism=Nannochloropsis oceanica|type=polypeptide|length=203bp
MPFWLPMVLLLVLLLVPRITAMLSPKSRCHSATARCSLCGPSLPSSSLPK
TLRPNRCAPLTEGLRLRWSQMPVHVPNKKLRTSSTSSSPSFSHSSLHPSP
FYSSYRYVRRCRGNIAQGTHTRMRSRRQRGRKGIVVMVVLMMVLVEGGNS
STCCSSTSSGCRRRYHRHRRYRVQTGRSPASTAGVGGPGRCGGNACCLTR
KA*
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mRNA from alignment at scaffold_4:135200..137324-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1839 ID=mRNA_1839|Name=jgi.p|Nanoce1779_2|578124|organism=Nannochloropsis oceanica|type=mRNA|length=2125bp|location=Sequence derived from alignment at scaffold_4:135200..137324- (Nannochloropsis oceanica)
GGAGGAGGGGGGGGAGGAGGAGGAGGAGGGAGAACCGAAGAAGTGGGGGG
GGGGGGGGGAGGGGGAGGAGGAGGTGTTGGTGGTGCCGAGTGTAAAAATG
TAGGCGGGGCGGTAGAAACTGGGTGATGAAGTGGAGGAGGGAAGGTAGGG
GTAGGGGAAGCCCGGTGTTGATGTTGGTATTGGTAGGAGGAAGTAGGTGG
AGGGGAAGGAGGAAAGAAAGCGGGTGCTGTGCGGGATAGCGACGCCGATG
ATGATGCACATGCAGAGGAGGCAGGCCCACTCCCAGCTATCGAGCACTGT
GCTGATTCCCAACGATGCTCCATCTGCTGATGTTCCTCCTGCTGCTGCGC
CTGCTGCTCCTCCTCCTGCTGCTGCACCACCTGTATGCTCATTGACCCTC
CCGCGCGAGAAAAGGCCTTAGTAGGTCCGTGGCTTCTCCTGCAAGTGTCA
TCGTCGGAATTGCCACAGGTGCGATTTCCCGTGGTGATGGTCAAACTATT
CATCCCCCTAGCCGCCGAGCATGGACGGCTGCTGAAGCATGAGGGCGACC
CCCTTCGAGAAGCGGGGCTCGTCCCCTTCCCTTTACCCAGGCCCGTGCTT
CGACCAGGGGAGGGGGCACGGTCAGCAATGCCACCAAGAATAGACGTAGC
GTAAGTGGAAGAGAAGGAGGTAGATGCCCAGGAACGTGCATGCCTTTTTG
GCTGCCGATGGTGCTGCTGTTGGTGCTGCTGCTGGTGCCACGAATCACGG
CCATGCTCAGCCCCAAATCCCGTTGTCATTCCGCCACGGCCCGCTGCTCC
CTTTGTGGCCCCTCCCTCCCCTCCTCGTCCCTCCCCAAAACGCTCCGCCC
AAACCGGTGTGCTCCTCTGACTGAGGGGCTGCGGCTGCGATGGAGCCAAA
TGCCGGTTCATGTTCCTAATAAAAAACTCCGAACCTCCTCCACCTCCTCC
TCCCCTTCCTTCTCCCATTCCTCCCTCCATCCCTCCCCCTTCTACTCCTC
CTACAGATATGTACGACGGTGCCGGGGAAATATTGCCCAAGGAACTCATA
CGCGAATGAGGTCGAGAAGACAAAGAGGAAGAAAAGGCATCGTGGTGATG
GTGGTACTGATGATGGTGTTGGTAGAAGGTGGCAACAGCAGCACCTGCTG
CAGCAGCACTAGCAGTGGTTGTAGAAGAAGATATCACAGGCACAGAAGGT
ATCGCGTACAGACGGGAAGGAGCCCGGCTTCTACTGCTGGCGTTGGCGGC
CCCGGTAGATGTGGTGGTAATGCCTGCTGCCTTACTCGTAAGGCATGAGG
AAGGCGAAGGGGGAGGAGCACCTGTGTACATATGGGCGCTGCTGCCGCTC
CCAGGCCTGCTACTCCTAGCAGCAGTAGCAGTAGTAGTAGCAGCAGCAGA
AGATGAGGGGATTAATGGTAAGGCCCGATAGCGCAGGGGAGCGGAAGGAC
GGTGGGTGGGGTGATATACGGAGGGGGGAAGCGAATAAACACTCAGGTTG
GTATTGAATTGAGCGAAGCTACTGCTGCTGACCGGCACGTTGCTTCCCTC
TCTCGTTCCTGTAAGAAGGACGAGGCGCGAGCCGACGAATGCGAGACCTT
TGGGGCGAGATAAGGGGGGGAGAGTGATGGTAAAAAGGACATGGATTCCG
ACCGTGGAGGAGGAGGATGAGGAAGGGAGGGAGAAAGAAGAGGAGGAACC
ACCCAGTCGAAGGAGGGTGATGGTGTCAGAAGTGTGAGAGCCAATCGCAG
CCAAGGCGTGTGTGGAGGGCTCGCCTGGTAAGCCACTGCCGACGGGGCGC
ACGGCGAGGAGATCGGGCATGGCCACATGGGGAACAGTGGTGGTCTCGAT
GTCGATGAGACGGGTGGAGATATCTCCGATATGGCTTCTCCTCATGCTAC
TCGGGTTACCGCTACTGATGGGACTATTACTATCATTTTTGTTGTAGCTA
TGATTGTTGTTGGTATAGGGAAAATGGATGAGGTGGAGAGCCGAGCCAAT
GGAGCTTGTGCGCATGGATAACCTAGGGCCAGCGATGGGACTAGGACTTG
ATCGTCGGGAGGATAAGCAAGGGCTGCTGCTGCTGCTACTGCTACTGCGC
CCATTCCATGCAGGGTTGGCAGGAG
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Coding sequence (CDS) from alignment at scaffold_4:135200..137324-

>mRNA_1839 ID=mRNA_1839|Name=jgi.p|Nanoce1779_2|578124|organism=Nannochloropsis oceanica|type=CDS|length=609bp|location=Sequence derived from alignment at scaffold_4:135200..137324- (Nannochloropsis oceanica)
ATGCCTTTTTGGCTGCCGATGGTGCTGCTGTTGGTGCTGCTGCTGGTGCC
ACGAATCACGGCCATGCTCAGCCCCAAATCCCGTTGTCATTCCGCCACGG
CCCGCTGCTCCCTTTGTGGCCCCTCCCTCCCCTCCTCGTCCCTCCCCAAA
ACGCTCCGCCCAAACCGGTGTGCTCCTCTGACTGAGGGGCTGCGGCTGCG
ATGGAGCCAAATGCCGGTTCATGTTCCTAATAAAAAACTCCGAACCTCCT
CCACCTCCTCCTCCCCTTCCTTCTCCCATTCCTCCCTCCATCCCTCCCCC
TTCTACTCCTCCTACAGATATGTACGACGGTGCCGGGGAAATATTGCCCA
AGGAACTCATACGCGAATGAGGTCGAGAAGACAAAGAGGAAGAAAAGGCA
TCGTGGTGATGGTGGTACTGATGATGGTGTTGGTAGAAGGTGGCAACAGC
AGCACCTGCTGCAGCAGCACTAGCAGTGGTTGTAGAAGAAGATATCACAG
GCACAGAAGGTATCGCGTACAGACGGGAAGGAGCCCGGCTTCTACTGCTG
GCGTTGGCGGCCCCGGTAGATGTGGTGGTAATGCCTGCTGCCTTACTCGT
AAGGCATGA
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Synonyms
Publications