jgi.p|Nanoce1779_2|578105, mRNA_1837 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578105
Unique NamemRNA_1837
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length547
Alignment locationscaffold_4:127407..127953 +

Link to JBrowse

Properties
Property NameValue
TranscriptId578191
TrackFilteredModels2
ProteinId578105
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:127407..127953 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578105gene_1837Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578105mRNA_1837-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1837CDS_1837Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1837 ID=mRNA_1837|Name=jgi.p|Nanoce1779_2|578105|organism=Nannochloropsis oceanica|type=mRNA|length=547bp
TCATCCTCCTTCTCCTCCTCGGCTACTGATGCTGCTGCTACTGCTGCTTC
CCCTCCCGCCAATCCTCTACCTCTCATCCGTCCTCCCCTCCCTCCCCTCC
TTCCCACTCGTGCTCTTACTCCCACACCTCCTCTCCCTCCTGCTCCTACT
CCTACACCTCCTCTCTCTCATGCATTTCGGTATTGTCTTTTGTCTTTCAT
TGTACCTCCAGATGCCTTTGATGATACCCGTGCAAGATGTGGTACAGATA
CGGGAGAAAGAGCCCTTCCACTGAGGTCTTATTCTTGACATCCAGGCAGG
CAGAGCCCTCCAGTTTTAGAAGCCGTCGTTCCTCGTTGATGAAGGATCGG
ACATTTTCCGGGATTGCCATCAGAGGGCCAGCGCCGCATGCCCCCTCTCC
ATCCTCCCCCATGCTGCTGCTGCTGGTGCTCGTGCTCGTGCTCGTGCTCG
TGTTCGTGCCATTGTTGCTGTTGCTGTTGCTGTTGCTGCTGCTGCAGCAG
CTGCTGCTGCTGCTGCTGCTGTTGCTATTGCTACTGCTGTTGCTGGT
back to top

protein sequence of jgi.p|Nanoce1779_2|578105

>mRNA_1837-protein ID=mRNA_1837-protein|Name=jgi.p|Nanoce1779_2|578105|organism=Nannochloropsis oceanica|type=polypeptide|length=82bp
MLLLLLLPLPPILYLSSVLPSLPSFPLVLLLPHLLSLLLLLLHLLSLMHF
GIVFCLSLYLQMPLMIPVQDVVQIREKEPFH*
back to top

mRNA from alignment at scaffold_4:127407..127953+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1837 ID=mRNA_1837|Name=jgi.p|Nanoce1779_2|578105|organism=Nannochloropsis oceanica|type=mRNA|length=547bp|location=Sequence derived from alignment at scaffold_4:127407..127953+ (Nannochloropsis oceanica)
TCATCCTCCTTCTCCTCCTCGGCTACTGATGCTGCTGCTACTGCTGCTTC
CCCTCCCGCCAATCCTCTACCTCTCATCCGTCCTCCCCTCCCTCCCCTCC
TTCCCACTCGTGCTCTTACTCCCACACCTCCTCTCCCTCCTGCTCCTACT
CCTACACCTCCTCTCTCTCATGCATTTCGGTATTGTCTTTTGTCTTTCAT
TGTACCTCCAGATGCCTTTGATGATACCCGTGCAAGATGTGGTACAGATA
CGGGAGAAAGAGCCCTTCCACTGAGGTCTTATTCTTGACATCCAGGCAGG
CAGAGCCCTCCAGTTTTAGAAGCCGTCGTTCCTCGTTGATGAAGGATCGG
ACATTTTCCGGGATTGCCATCAGAGGGCCAGCGCCGCATGCCCCCTCTCC
ATCCTCCCCCATGCTGCTGCTGCTGGTGCTCGTGCTCGTGCTCGTGCTCG
TGTTCGTGCCATTGTTGCTGTTGCTGTTGCTGTTGCTGCTGCTGCAGCAG
CTGCTGCTGCTGCTGCTGCTGTTGCTATTGCTACTGCTGTTGCTGGT
back to top

Coding sequence (CDS) from alignment at scaffold_4:127407..127953+

>mRNA_1837 ID=mRNA_1837|Name=jgi.p|Nanoce1779_2|578105|organism=Nannochloropsis oceanica|type=CDS|length=246bp|location=Sequence derived from alignment at scaffold_4:127407..127953+ (Nannochloropsis oceanica)
ATGCTGCTGCTACTGCTGCTTCCCCTCCCGCCAATCCTCTACCTCTCATC
CGTCCTCCCCTCCCTCCCCTCCTTCCCACTCGTGCTCTTACTCCCACACC
TCCTCTCCCTCCTGCTCCTACTCCTACACCTCCTCTCTCTCATGCATTTC
GGTATTGTCTTTTGTCTTTCATTGTACCTCCAGATGCCTTTGATGATACC
CGTGCAAGATGTGGTACAGATACGGGAGAAAGAGCCCTTCCACTGA
back to top
Synonyms
Publications