jgi.p|Nanoce1779_2|578102, mRNA_1836 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578102
Unique NamemRNA_1836
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length731
Alignment locationscaffold_4:125979..126709 -

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Properties
Property NameValue
TranscriptId578188
TrackFilteredModels2
ProteinId578102
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:125979..126709 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578102gene_1836Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578102mRNA_1836-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1836CDS_1836Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1836 ID=mRNA_1836|Name=jgi.p|Nanoce1779_2|578102|organism=Nannochloropsis oceanica|type=mRNA|length=731bp
AGCAACTCGTCACGATACTTCGTACATCCTAGGCCCATCCCACAACAAGC
CTATGGTCACGCTACGGTCGGGGATCCAGGCAACGGACGCTGAGGAAGTT
GCGGCACTGGTACATGCCACTGATGCCCTTGTCCCCTGCCTAGAAGTCAA
ACCCTCTTTCATCCCCGGGGCGGGAGACGGCCTGTTTACTGCAGTTGACC
TTCCGGCGCTGAAACCCTTGGTGCTGTATTATGGAGAGCTTCGAAAAGAG
AAGGCGCAAGGTCGGTACTGCATTCAAGTAGGTCCTTCTTTGACCTTGGA
TGCGGAGGCCTTGCTGTCGTTTTCAAGCGGCTACGAGGGAGGCGCCACGG
CTTTGGCATCGGGTGCGGGAAGAGGGGATGAGACCAAGACGCAGAACTTG
GGTCGATACGTCAATGATGCTCGCGGGCAAGCACGTCTGGAGAACAATAT
GCGCTACGGCAGGTTATTGCGATTTGACCATTACGATGAGAAGGCGAACA
GCGTCTTGAAAGGAAAGGGGAATGACGCAGCCCAGTGTCAAAGGAGAATA
CGGAGCAAGCGACCACCGTGTGTCGTCATGTACAGCACACGGAATATCAA
GGCGGGGGAAGAGCTGCTTGCTTCGTATGGTAAGTGGTACTGGCAACGGT
GGGGAGATATGCGTGAGCCTCCGGATGGAGTAATGGAAAATAGAGAAGAG
TGAAAGAATGTATGTACTGCAATGCATTGAA
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protein sequence of jgi.p|Nanoce1779_2|578102

>mRNA_1836-protein ID=mRNA_1836-protein|Name=jgi.p|Nanoce1779_2|578102|organism=Nannochloropsis oceanica|type=polypeptide|length=217bp
MVTLRSGIQATDAEEVAALVHATDALVPCLEVKPSFIPGAGDGLFTAVDL
PALKPLVLYYGELRKEKAQGRYCIQVGPSLTLDAEALLSFSSGYEGGATA
LASGAGRGDETKTQNLGRYVNDARGQARLENNMRYGRLLRFDHYDEKANS
VLKGKGNDAAQCQRRIRSKRPPCVVMYSTRNIKAGEELLASYGKWYWQRW
GDMREPPDGVMENREE*
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mRNA from alignment at scaffold_4:125979..126709-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1836 ID=mRNA_1836|Name=jgi.p|Nanoce1779_2|578102|organism=Nannochloropsis oceanica|type=mRNA|length=731bp|location=Sequence derived from alignment at scaffold_4:125979..126709- (Nannochloropsis oceanica)
AGCAACTCGTCACGATACTTCGTACATCCTAGGCCCATCCCACAACAAGC
CTATGGTCACGCTACGGTCGGGGATCCAGGCAACGGACGCTGAGGAAGTT
GCGGCACTGGTACATGCCACTGATGCCCTTGTCCCCTGCCTAGAAGTCAA
ACCCTCTTTCATCCCCGGGGCGGGAGACGGCCTGTTTACTGCAGTTGACC
TTCCGGCGCTGAAACCCTTGGTGCTGTATTATGGAGAGCTTCGAAAAGAG
AAGGCGCAAGGTCGGTACTGCATTCAAGTAGGTCCTTCTTTGACCTTGGA
TGCGGAGGCCTTGCTGTCGTTTTCAAGCGGCTACGAGGGAGGCGCCACGG
CTTTGGCATCGGGTGCGGGAAGAGGGGATGAGACCAAGACGCAGAACTTG
GGTCGATACGTCAATGATGCTCGCGGGCAAGCACGTCTGGAGAACAATAT
GCGCTACGGCAGGTTATTGCGATTTGACCATTACGATGAGAAGGCGAACA
GCGTCTTGAAAGGAAAGGGGAATGACGCAGCCCAGTGTCAAAGGAGAATA
CGGAGCAAGCGACCACCGTGTGTCGTCATGTACAGCACACGGAATATCAA
GGCGGGGGAAGAGCTGCTTGCTTCGTATGGTAAGTGGTACTGGCAACGGT
GGGGAGATATGCGTGAGCCTCCGGATGGAGTAATGGAAAATAGAGAAGAG
TGAAAGAATGTATGTACTGCAATGCATTGAA
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Coding sequence (CDS) from alignment at scaffold_4:125979..126709-

>mRNA_1836 ID=mRNA_1836|Name=jgi.p|Nanoce1779_2|578102|organism=Nannochloropsis oceanica|type=CDS|length=651bp|location=Sequence derived from alignment at scaffold_4:125979..126709- (Nannochloropsis oceanica)
ATGGTCACGCTACGGTCGGGGATCCAGGCAACGGACGCTGAGGAAGTTGC
GGCACTGGTACATGCCACTGATGCCCTTGTCCCCTGCCTAGAAGTCAAAC
CCTCTTTCATCCCCGGGGCGGGAGACGGCCTGTTTACTGCAGTTGACCTT
CCGGCGCTGAAACCCTTGGTGCTGTATTATGGAGAGCTTCGAAAAGAGAA
GGCGCAAGGTCGGTACTGCATTCAAGTAGGTCCTTCTTTGACCTTGGATG
CGGAGGCCTTGCTGTCGTTTTCAAGCGGCTACGAGGGAGGCGCCACGGCT
TTGGCATCGGGTGCGGGAAGAGGGGATGAGACCAAGACGCAGAACTTGGG
TCGATACGTCAATGATGCTCGCGGGCAAGCACGTCTGGAGAACAATATGC
GCTACGGCAGGTTATTGCGATTTGACCATTACGATGAGAAGGCGAACAGC
GTCTTGAAAGGAAAGGGGAATGACGCAGCCCAGTGTCAAAGGAGAATACG
GAGCAAGCGACCACCGTGTGTCGTCATGTACAGCACACGGAATATCAAGG
CGGGGGAAGAGCTGCTTGCTTCGTATGGTAAGTGGTACTGGCAACGGTGG
GGAGATATGCGTGAGCCTCCGGATGGAGTAATGGAAAATAGAGAAGAGTG
A
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Synonyms
Publications