jgi.p|Nanoce1779_2|286499, mRNA_1835 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|286499
Unique Name	mRNA_1835
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1764
Alignment location	scaffold_4:124106..125958 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	286585
Track	FilteredModels2
ProteinId	286499

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:124106..125958 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|286499	gene_1835	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|286499	mRNA_1835-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1835	CDS_1835	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:124106..125958+
coding sequence from alignment at scaffold_4:124106..125958+

mRNA sequence

>mRNA_1835 ID=mRNA_1835|Name=jgi.p|Nanoce1779_2|286499|organism=Nannochloropsis oceanica|type=mRNA|length=1764bp
TCTGCGCGAGCGGGAGTACCCCATGGGGGGCGTCGTCGGTCCGAACGGTG
CCTGTAGTGGGCCGCAGTAAGTGGCCGTGGATGGGTTAGTAGAGGGCGAG
ACCACATTCATTTCGCATTCATTTTTCTTGTCATGCGAGTGAAGGCTTAG
TTCTAGAAGGAAGGATTGATCCCGCGTACAAACTATTACCTGTCCTCTAT
CATACAACACAAATGCACACAGCAGGACGCCGTGGCCAGGGCCGACGAAT
GGAGGACCGCAAAAACCTGCCACCGCCACCCACCACTTTAAACATCAGTA
TCGTCACTTGGAACATGGCCGAAAGGTCCCCCCCATTATCAGACGTCTCT
CTCGTCGCTAGCGCTGCCCAACTTAATACCTCCGACCTCTGTATTCTCGG
CGTGCAAGAAATCGAAAATTTGAAGCCGAGGCGACACGAAGGTTCCCGCT
CCCGGGAATGGCGACGGCTCATCCTTCATTCCCTGGGACGGACCCACACC
CTCCTCTCGCTCACCAAGTTAGGAGGGATGCAGTTGGCAGTGCTGGCCAA
AAAAGCTCTGCTTCCCCACCTCTCCCCCCTACATGTGTGCGAAGTTCCGT
GTGGTGTGGGGAACATCATTCACAACAAAGGAGGACAAGCCGCCCTGTTC
CGCGTGGGTCCCCACACTTCCTTCCTCTTTATCAATGCCCATCTCGCGGC
CCATGCCCATCGAGTCGAAGACCGCAACGCAGACGTCGACCGCGTCATGA
CCGAGCTTCAGAACCTCCTTTGGTACCACCTTGAGTCCAACAAGAAGAAG
AAGAAGACCCTGCCCTTCTCGTCCTCCCCCCTTCCCTCCTCCCCTATTCA
GTACCAACACCACCACCCTCCCGCTCCTTCCGCCCTCCTTGACAAGGTTG
ACCGCCTCTTTTTTTTGGGCGACCTCAATTACCGTCTCGAGCTCCAACGA
GAAGACATTGAAGTACCCCTCCGCCGGGTTAAAAATTCAAAAATAACGGT
CCAAGAAGCCGTTTCTCGCCTCCTAGAATACGACCAGTTGATGATTGAAA
GACTCGAAAAAAAGAGAGTTTTTCAGGGCCTGGTGGAGAAGGAAGTCTGC
TTCCTCCCGACATTTAAGTTCAACAAGGGTAGGGATTTGTATGATACATC
TCCCAAGAAACGCGCCCCTGCTTGGACTGATCGGGTTTTGTTCAAGCCGT
GTGAGGGGAAGGTGAAGTGTGAGAAATACGAGTCTGTAGGAGGGGCACGG
CACAGTGACCATCGGCCAGTGGTCGGCGTGTTTACGGTGCAGTTGGAGGA
GGAAGAGGTATTGAAGAAGGGGGGAAAGAAGGAAGAAGTGCCGACGTATG
GGAAGGAGGATGAGGGTAAAGGGTCGGATATGGAGATGGGAGGGAACTGG
AAAATAGAGAGGAAGGTGTCGTCATCGTTGTCTATGGCCGAGGAGGAGGA
GGGGGGAGGAGGAGGAGGACGAGGAGGAGGATGAAGAGGGGGAGGAGGAG
AAGGAAGAGGCGGGATTGATTGAAGAAGAGGAAGATGAAGAATATGACGA
CGACTCGGAGTACGGGAGCGATGACGAGGAGGAGGAGGAGGAGGACGACG
ACGATAGTGACTTTTTTTGAAATGAATACTGAATTTCAAAGAGAGAATAT
AAAGCACACACCAGCAAACTACCATGTGTGAGACACACATGTATCAGCAA
AAACGTATTAGGAAAATAATTAAAACGATTCATGAAATATGGCATCCTTG
CTCGGGCGTGCAAA

protein sequence of jgi.p|Nanoce1779_2|286499

>mRNA_1835-protein ID=mRNA_1835-protein|Name=jgi.p|Nanoce1779_2|286499|organism=Nannochloropsis oceanica|type=polypeptide|length=424bp
MHTAGRRGQGRRMEDRKNLPPPPTTLNISIVTWNMAERSPPLSDVSLVAS
AAQLNTSDLCILGVQEIENLKPRRHEGSRSREWRRLILHSLGRTHTLLSL
TKLGGMQLAVLAKKALLPHLSPLHVCEVPCGVGNIIHNKGGQAALFRVGP
HTSFLFINAHLAAHAHRVEDRNADVDRVMTELQNLLWYHLESNKKKKKTL
PFSSSPLPSSPIQYQHHHPPAPSALLDKVDRLFFLGDLNYRLELQREDIE
VPLRRVKNSKITVQEAVSRLLEYDQLMIERLEKKRVFQGLVEKEVCFLPT
FKFNKGRDLYDTSPKKRAPAWTDRVLFKPCEGKVKCEKYESVGGARHSDH
RPVVGVFTVQLEEEEVLKKGGKKEEVPTYGKEDEGKGSDMEMGGNWKIER
KVSSSLSMAEEEEGGGGGGRGGG*

mRNA from alignment at scaffold_4:124106..125958+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1835 ID=mRNA_1835|Name=jgi.p|Nanoce1779_2|286499|organism=Nannochloropsis oceanica|type=mRNA|length=1853bp|location=Sequence derived from alignment at scaffold_4:124106..125958+ (Nannochloropsis oceanica)
TCTGCGCGAGCGGGAGTACCCCATGGGGGGCGTCGTCGGTCCGAACGGTG
CCTGTAGTGGGCCGCAGTAAGTGGCCGTGGATGGGTTAGTAGAGGGCGAG
ACCACATTCATTTCGCATTCATTTTTCTTGTCATGCGAGTGAAGGCTTAG
TTCTAGAAGGAAGGATTGATCCCGCGTACAAACTATTACCTGTCCTCTAT
CATACAACACAAATGCACACAGCAGGACGCCGTGGCCAGGGCCGACGAAT
GGAGGACCGCAAAAACCTGCCACCGGTGCGCACACAAAAAAATCTTCCTT
CCTCCTCGCTTTAATCAGCCCCCTCTTATTTCTCCCTCCTCTTTTTCACT
CTGCCCCTTCCCAGCCACCCACCACTTTAAACATCAGTATCGTCACTTGG
AACATGGCCGAAAGGTCCCCCCCATTATCAGACGTCTCTCTCGTCGCTAG
CGCTGCCCAACTTAATACCTCCGACCTCTGTATTCTCGGCGTGCAAGAAA
TCGAAAATTTGAAGCCGAGGCGACACGAAGGTTCCCGCTCCCGGGAATGG
CGACGGCTCATCCTTCATTCCCTGGGACGGACCCACACCCTCCTCTCGCT
CACCAAGTTAGGAGGGATGCAGTTGGCAGTGCTGGCCAAAAAAGCTCTGC
TTCCCCACCTCTCCCCCCTACATGTGTGCGAAGTTCCGTGTGGTGTGGGG
AACATCATTCACAACAAAGGAGGACAAGCCGCCCTGTTCCGCGTGGGTCC
CCACACTTCCTTCCTCTTTATCAATGCCCATCTCGCGGCCCATGCCCATC
GAGTCGAAGACCGCAACGCAGACGTCGACCGCGTCATGACCGAGCTTCAG
AACCTCCTTTGGTACCACCTTGAGTCCAACAAGAAGAAGAAGAAGACCCT
GCCCTTCTCGTCCTCCCCCCTTCCCTCCTCCCCTATTCAGTACCAACACC
ACCACCCTCCCGCTCCTTCCGCCCTCCTTGACAAGGTTGACCGCCTCTTT
TTTTTGGGCGACCTCAATTACCGTCTCGAGCTCCAACGAGAAGACATTGA
AGTACCCCTCCGCCGGGTTAAAAATTCAAAAATAACGGTCCAAGAAGCCG
TTTCTCGCCTCCTAGAATACGACCAGTTGATGATTGAAAGACTCGAAAAA
AAGAGAGTTTTTCAGGGCCTGGTGGAGAAGGAAGTCTGCTTCCTCCCGAC
ATTTAAGTTCAACAAGGGTAGGGATTTGTATGATACATCTCCCAAGAAAC
GCGCCCCTGCTTGGACTGATCGGGTTTTGTTCAAGCCGTGTGAGGGGAAG
GTGAAGTGTGAGAAATACGAGTCTGTAGGAGGGGCACGGCACAGTGACCA
TCGGCCAGTGGTCGGCGTGTTTACGGTGCAGTTGGAGGAGGAAGAGGTAT
TGAAGAAGGGGGGAAAGAAGGAAGAAGTGCCGACGTATGGGAAGGAGGAT
GAGGGTAAAGGGTCGGATATGGAGATGGGAGGGAACTGGAAAATAGAGAG
GAAGGTGTCGTCATCGTTGTCTATGGCCGAGGAGGAGGAGGGGGGAGGAG
GAGGAGGACGAGGAGGAGGATGAAGAGGGGGAGGAGGAGAAGGAAGAGGC
GGGATTGATTGAAGAAGAGGAAGATGAAGAATATGACGACGACTCGGAGT
ACGGGAGCGATGACGAGGAGGAGGAGGAGGAGGACGACGACGATAGTGAC
TTTTTTTGAAATGAATACTGAATTTCAAAGAGAGAATATAAAGCACACAC
CAGCAAACTACCATGTGTGAGACACACATGTATCAGCAAAAACGTATTAG
GAAAATAATTAAAACGATTCATGAAATATGGCATCCTTGCTCGGGCGTGC
AAA

Coding sequence (CDS) from alignment at scaffold_4:124106..125958+

>mRNA_1835 ID=mRNA_1835|Name=jgi.p|Nanoce1779_2|286499|organism=Nannochloropsis oceanica|type=CDS|length=2544bp|location=Sequence derived from alignment at scaffold_4:124106..125958+ (Nannochloropsis oceanica)
ATGCACACAGCAGGACGCCGTGGCCAGGGCCGACGAATGGAGGACCGCAA
AAACCTGCCACCGCCACCCACCACTTTAAACATCAGTATCGTCACTTGGA
ACATGGCCGAAAGGTCCCCCCCATTATCAGACGTCTCTCTCGTCGCTAGC
GCTGCCCAACTTAATACCTCCGACCTCTGTATTCTCGGCGTGCAAGAAAT
CGAAAATTTGAAGCCGAGGCGACACGAAGGTTCCCGCTCCCGGGAATGGC
GACGGCTCATCCTTCATTCCCTGGGACGGACCCACACCCTCCTCTCGCTC
ACCAAGTTAGGAGGGATGCAGTTGGCAGTGCTGGCCAAAAAAGCTCTGCT
TCCCCACCTCTCCCCCCTACATGTGTGCGAAGTTCCGTGTGGTGTGGGGA
ACATCATTCACAACAAAGGAGGACAAGCCGCCCTGTTCCGCGTGGGTCCC
CACACTTCCTTCCTCTTTATCAATGCCCATCTCGCGGCCCATGCCCATCG
AGTCGAAGACCGCAACGCAGACGTCGACCGCGTCATGACCGAGCTTCAGA
ACCTCCTTTGGTACCACCTTGAGTCCAACAAGAAGAAGAAGAAGACCCTG
CCCTTCTCGTCCTCCCCCCTTCCCTCCTCCCCTATTCAGTACCAACACCA
CCACCCTCCCGCTCCTTCCGCCCTCCTTGACAAGGTTGACCGCCTCTTTT
TTTTGGGCGACCTCAATTACCGTCTCGAGCTCCAACGAGAAGACATTGAA
GTACCCCTCCGCCGGGTTAAAAATTCAAAAATAACGGTCCAAGAAGCCGT
TTCTCGCCTCCTAGAATACGACCAGTTGATGATTGAAAGACTCGAAAAAA
AGAGAGTTTTTCAGGGCCTGGTGGAGAAGGAAGTCTGCTTCCTCCCGACA
TTTAAGTTCAACAAGGGTAGGGATTTGTATGATACATCTCCCAAGAAACG
CGCCCCTGCTTGGACTGATCGGGTTTTGTTCAAGCCGTGTGAGGGGAAGG
TGAAGTGTGAGAAATACGAGTCTGTAGGAGGGGCACGGCACAGTGACCAT
CGGCCAGTGGTCGGCGTGTTTACGGTGCAGTTGGAGGAGGAAGAGGTATT
GAAGAAGGGGGGAAAGAAGGAAGAAGTGCCGACGTATGGGAAGGAGGATG
AGGGTAAAGGGTCGGATATGGAGATGGGAGGGAACTGGAAAATAGAGAGG
AAGGTGTCGTCATCGTTGTCTATGGCCGAGGAGGAGGAGGGGGGAGGAGG
AGGAGGACGAGGAGGAGGATGAATGCACACAGCAGGACGCCGTGGCCAGG
GCCGACGAATGGAGGACCGCAAAAACCTGCCACCGCCACCCACCACTTTA
AACATCAGTATCGTCACTTGGAACATGGCCGAAAGGTCCCCCCCATTATC
AGACGTCTCTCTCGTCGCTAGCGCTGCCCAACTTAATACCTCCGACCTCT
GTATTCTCGGCGTGCAAGAAATCGAAAATTTGAAGCCGAGGCGACACGAA
GGTTCCCGCTCCCGGGAATGGCGACGGCTCATCCTTCATTCCCTGGGACG
GACCCACACCCTCCTCTCGCTCACCAAGTTAGGAGGGATGCAGTTGGCAG
TGCTGGCCAAAAAAGCTCTGCTTCCCCACCTCTCCCCCCTACATGTGTGC
GAAGTTCCGTGTGGTGTGGGGAACATCATTCACAACAAAGGAGGACAAGC
CGCCCTGTTCCGCGTGGGTCCCCACACTTCCTTCCTCTTTATCAATGCCC
ATCTCGCGGCCCATGCCCATCGAGTCGAAGACCGCAACGCAGACGTCGAC
CGCGTCATGACCGAGCTTCAGAACCTCCTTTGGTACCACCTTGAGTCCAA
CAAGAAGAAGAAGAAGACCCTGCCCTTCTCGTCCTCCCCCCTTCCCTCCT
CCCCTATTCAGTACCAACACCACCACCCTCCCGCTCCTTCCGCCCTCCTT
GACAAGGTTGACCGCCTCTTTTTTTTGGGCGACCTCAATTACCGTCTCGA
GCTCCAACGAGAAGACATTGAAGTACCCCTCCGCCGGGTTAAAAATTCAA
AAATAACGGTCCAAGAAGCCGTTTCTCGCCTCCTAGAATACGACCAGTTG
ATGATTGAAAGACTCGAAAAAAAGAGAGTTTTTCAGGGCCTGGTGGAGAA
GGAAGTCTGCTTCCTCCCGACATTTAAGTTCAACAAGGGTAGGGATTTGT
ATGATACATCTCCCAAGAAACGCGCCCCTGCTTGGACTGATCGGGTTTTG
TTCAAGCCGTGTGAGGGGAAGGTGAAGTGTGAGAAATACGAGTCTGTAGG
AGGGGCACGGCACAGTGACCATCGGCCAGTGGTCGGCGTGTTTACGGTGC
AGTTGGAGGAGGAAGAGGTATTGAAGAAGGGGGGAAAGAAGGAAGAAGTG
CCGACGTATGGGAAGGAGGATGAGGGTAAAGGGTCGGATATGGAGATGGG
AGGGAACTGGAAAATAGAGAGGAAGGTGTCGTCATCGTTGTCTATGGCCG
AGGAGGAGGAGGGGGGAGGAGGAGGAGGACGAGGAGGAGGATGA

Synonyms

Publications