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Properties
| Property Name | Value |
|---|
| TranscriptId | 668705 |
| Track | FilteredModels2 |
| ProteinId | 668619 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_4 | supercontig | scaffold_4:121235..123553 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1834 ID=mRNA_1834|Name=jgi.p|Nanoce1779_2|668619|organism=Nannochloropsis oceanica|type=mRNA|length=1869bp
ATGCCCGAAACTGTGGCCTTGGGAAGCAGAAGCGTCTCCAACAACATCAA
CAACGCAGTGAGGATGGCAATGGAGGGAGATTCGTCACCGTTTCAATTTA
GCCTCTTTGCATTTGGAAGGGGCGACGGAGGGACAGTCAAAACGTCACCC
GCCAGCGGCACAAAAAAGAATAGGCAGCAGCAGCCACCCCAGAAAAAAGA
GGAAGACAAGGGATGTGGTGGCTTCGCCTCGTTCAATAGCGAATGGAAAG
ACCAACTCGCCCTCGCGAAGAAAATCAAGAAGCTGGAGAAGGAGGTCGCT
GACGACTACATACGGGGATCGAGAGCCAAGGCTGCCCAGTACAGGTATGA
GGCTTTGCGGACGCTGGAAGAGGTGCAGGGCGGTAGGGAGGGAGGGCAGG
GCGCGTTGGAGTTCGACCCTATCATAGCGGGGAAGACCATGAAGAGCCAA
CGGTTGGAAGTGAAGGATGCGAAGCTCCTCCTCCACCAGCAGCAACAACA
GCAGCAGCAGGAGCTTCAACAGCCAGGGCAAAGAGAGGAAAGCATGCCCC
TGAAGCCCGAGGATCTAGACAGGATGCTACAGCAACTGGAGAGCGTGGTG
AAAGACGAACAACAATGGGCCAGGCTCGCTTCTGCCTGTGTCGGGGCCCT
CCTCGGACTGCTCCTCATCCCTTCCCATAATTTTTTTGGTGTGACGTTTC
TGGCACTCTTCGTGACTTTCCTCACCACGACGCCGGGGCTGGTAGGGGAC
GCGGCGAGGATGAGTGGTTATGGCCTCCTGTCGCTCGCCAATGCCCTTGG
TCAATTCGAGAAGAAATTTGCCGTGTTACGAAGGGTACGTGAGGCCATGT
GGGACATGGCCGAGGCCTCGATCCCGTTTAAACTTGAATTTAAAGATGAA
AATTCGTTGAAACACTGGCGGAATGCTTACAAAGGAGAGGGTTTTCTCCA
TCCAGACATAAGGCCGGCGCCGCCGATGAGGGACGCTCAGTATGTGGAGT
ACCTCAGGGAGGTGAAGAAGTGGGTGGAGGTGGAAGAGAGAGAGGTGCTG
AGGGCCCTCAGGAAGAAGGAGGATGAGCGGGCGAGTGGGTTGAGGGAGAG
GGAGGAGAGGAGGGAGAGGATGCAGAAGGTGTTGGTTGGCTTGTGGGAGG
GGAGTGCGACGGCGGCGACGATGGTGGGGGGGATGGTGATGAGTAAGAGG
GAGGGAGGGATGGGAGAGATAGAGAAGGAGTTTAAAGGGGAAGGAGGGAT
GGACGACGACGTAGCGTTTTTGAAGAGATTTGTGGAGAGGGAACGGGGGT
AGAAAGGATGACGACGAAGGAGGAAGGAGGGAGGGGGGGGGTTCTGTGAC
ATACATTTATATAGCCGTTAGTAAATTTTCGTTGTGCAGAGAGACGGTGA
AAGGCAGTCTAGAAGAGAGACAAACCAAAGAGGAAGAGAAGAGAAGAGTG
TACTTTTCCATCTGATTCCTTTTTCCGATTTTTGCTTCCCTCCTCTCCTC
CCTCCTCCCTCCTTCTTCCCGTCCTCCCTCTTTTCCTATCGCTATCCCTA
TCTCTGCTCCCTCTTCTCCTCCGTCTCAATCTCCACCATCATCGCCTTGT
CAACATCCTGATTCTGGACCTCCGCCAAAAATTTCAAAATTTGCCGAGGA
CCCACCTCCACGAAGGCCCGCTGCCCCAGCCGGTAATAAAACTCATTCCT
CACCCTCCCTCCTGTCCCCACCTCCTGCTGCTCTCTCTCCCGGATCAGGT
ACTGCTCCTTTTTCATCCTTTCCAGCGCAACCCCGACATCGCCCACTCCC
TCCAGCTCCCCTGCAAGAATCATCTCCTGTCCTTCCCCCTCCCATAATCC
TCCTCCTCCTCCCCCCCCG back to topprotein sequence of jgi.p|Nanoce1779_2|668619 >mRNA_1834-protein ID=mRNA_1834-protein|Name=jgi.p|Nanoce1779_2|668619|organism=Nannochloropsis oceanica|type=polypeptide|length=434bp
MPETVALGSRSVSNNINNAVRMAMEGDSSPFQFSLFAFGRGDGGTVKTSP
ASGTKKNRQQQPPQKKEEDKGCGGFASFNSEWKDQLALAKKIKKLEKEVA
DDYIRGSRAKAAQYRYEALRTLEEVQGGREGGQGALEFDPIIAGKTMKSQ
RLEVKDAKLLLHQQQQQQQQELQQPGQREESMPLKPEDLDRMLQQLESVV
KDEQQWARLASACVGALLGLLLIPSHNFFGVTFLALFVTFLTTTPGLVGD
AARMSGYGLLSLANALGQFEKKFAVLRRVREAMWDMAEASIPFKLEFKDE
NSLKHWRNAYKGEGFLHPDIRPAPPMRDAQYVEYLREVKKWVEVEEREVL
RALRKKEDERASGLREREERRERMQKVLVGLWEGSATAATMVGGMVMSKR
EGGMGEIEKEFKGEGGMDDDVAFLKRFVERERG* back to topmRNA from alignment at scaffold_4:121235..123553- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1834 ID=mRNA_1834|Name=jgi.p|Nanoce1779_2|668619|organism=Nannochloropsis oceanica|type=mRNA|length=2319bp|location=Sequence derived from alignment at scaffold_4:121235..123553- (Nannochloropsis oceanica)
ATGCCCGAAACTGTGGCCTTGGGAAGGTGCTTCTTCTCATTCATCTAAAA
GAATAGCCGCTATCGCTTGTCTCGCCTTCCATGTCGTGACTGCGGCTTGC
AACTCCATAGCCTCCATTCGTCCCTTTCTCCTCCCCACCCGAAAAGGTAA
GTCTTTCTACTTTCCTTTCCCTATGCACTTCCGCGCAACCTTTTCGCTCA
TGTTCATGCATATAATCTCTTCTAAACTCGAAAACTAGTGGAATTCTGTC
CTGCCCCCTCTTCTTCCCTCCCGTGCATCTCGCCAAGCCACCGCCTGCTA
TGGTGTCAGACCTCCTCCTCCTTCCCCTCCACCGGCAGCAGAAGCGTCTC
CAACAACATCAACAACGCAGTGAGGATGGCAATGGAGGGAGATTCGTCAC
CGTTTCAATTTAGCCTCTTTGCATTTGGAAGGGGCGACGGAGGGACAGTC
AAAACGTCACCCGCCAGCGGCACAAAAAAGAATAGGCAGCAGCAGCCACC
CCAGAAAAAAGAGGAAGACAAGGGATGGTTCGTCTTTTCTTTCCCTTTCT
CCAGCATAAGTCCAGCGGAACAGCAAGAGATTTCTAAGAAGGGGAAGAAG
AGGAAGAAGAGGAAAGCGGAGGATGAGAAGAAAGGTTGGTTCTCCCTTCT
TTCTCTCCCTTGGAGTGGTGGCTTCGCCTCGTTCAATAGCGAATGGAAAG
ACCAACTCGCCCTCGCGAAGAAAATCAAGAAGCTGGAGAAGGAGGTCGCT
GACGACTACATACGGGGATCGAGAGCCAAGGCTGCCCAGTACAGGTATGA
GGCTTTGCGGACGCTGGAAGAGGTGCAGGGCGGTAGGGAGGGAGGGCAGG
GCGCGTTGGAGTTCGACCCTATCATAGCGGGGAAGACCATGAAGAGCCAA
CGGTTGGAAGTGAAGGATGCGAAGCTCCTCCTCCACCAGCAGCAACAACA
GCAGCAGCAGGAGCTTCAACAGCCAGGGCAAAGAGAGGAAAGCATGCCCC
TGAAGCCCGAGGATCTAGACAGGATGCTACAGCAACTGGAGAGCGTGGTG
AAAGACGAACAACAATGGGCCAGGCTCGCTTCTGCCTGTGTCGGGGCCCT
CCTCGGACTGCTCCTCATCCCTTCCCATAATTTTTTTGGTGTGACGTTTC
TGGCACTCTTCGTGACTTTCCTCACCACGACGCCGGGGCTGGTAGGGGAC
GCGGCGAGGATGAGTGGTTATGGCCTCCTGTCGCTCGCCAATGCCCTTGG
TCAATTCGAGAAGAAATTTGCCGTGTTACGAAGGGTACGTGAGGCCATGT
GGGACATGGCCGAGGCCTCGATCCCGTTTAAACTTGAATTTAAAGATGAA
AATTCGTTGAAACACTGGCGGAATGCTTACAAAGGAGAGGGTTTTCTCCA
TCCAGACATAAGGCCGGCGCCGCCGATGAGGGACGCTCAGTATGTGGAGT
ACCTCAGGGAGGTGAAGAAGTGGGTGGAGGTGGAAGAGAGAGAGGTGCTG
AGGGCCCTCAGGAAGAAGGAGGATGAGCGGGCGAGTGGGTTGAGGGAGAG
GGAGGAGAGGAGGGAGAGGATGCAGAAGGTGTTGGTTGGCTTGTGGGAGG
GGAGTGCGACGGCGGCGACGATGGTGGGGGGGATGGTGATGAGTAAGAGG
GAGGGAGGGATGGGAGAGATAGAGAAGGAGTTTAAAGGGGAAGGAGGGAT
GGACGACGACGTAGCGTTTTTGAAGAGATTTGTGGAGAGGGAACGGGGGT
AGAAAGGATGACGACGAAGGAGGAAGGAGGGAGGGGGGGGGTTCTGTGAC
ATACATTTATATAGCCGTTAGTAAATTTTCGTTGTGCAGAGAGACGGTGA
AAGGCAGTCTAGAAGAGAGACAAACCAAAGAGGAAGAGAAGAGAAGAGTG
TACTTTTCCATCTGATTCCTTTTTCCGATTTTTGCTTCCCTCCTCTCCTC
CCTCCTCCCTCCTTCTTCCCGTCCTCCCTCTTTTCCTATCGCTATCCCTA
TCTCTGCTCCCTCTTCTCCTCCGTCTCAATCTCCACCATCATCGCCTTGT
CAACATCCTGATTCTGGACCTCCGCCAAAAATTTCAAAATTTGCCGAGGA
CCCACCTCCACGAAGGCCCGCTGCCCCAGCCGGTAATAAAACTCATTCCT
CACCCTCCCTCCTGTCCCCACCTCCTGCTGCTCTCTCTCCCGGATCAGGT
ACTGCTCCTTTTTCATCCTTTCCAGCGCAACCCCGACATCGCCCACTCCC
TCCAGCTCCCCTGCAAGAATCATCTCCTGTCCTTCCCCCTCCCATAATCC
TCCTCCTCCTCCCCCCCCG back to topCoding sequence (CDS) from alignment at scaffold_4:121235..123553- >mRNA_1834 ID=mRNA_1834|Name=jgi.p|Nanoce1779_2|668619|organism=Nannochloropsis oceanica|type=CDS|length=3906bp|location=Sequence derived from alignment at scaffold_4:121235..123553- (Nannochloropsis oceanica)
TGGTGGCTTCGCCTCGTTCAATAGCGAATGGAAAGACCAACTCGCCCTCG
CGAAGAAAATCAAGAAGCTGGAGAAGGAGGTCGCTGACGACTACATACGG
GGATCGAGAGCCAAGGCTGCCCAGTACAGGTATGAGGCTTTGCGGACGCT
GGAAGAGGTGCAGGGCGGTAGGGAGGGAGGGCAGGGCGCGTTGGAGTTCG
ACCCTATCATAGCGGGGAAGACCATGAAGAGCCAACGGTTGGAAGTGAAG
GATGCGAAGCTCCTCCTCCACCAGCAGCAACAACAGCAGCAGCAGGAGCT
TCAACAGCCAGGGCAAAGAGAGGAAAGCATGCCCCTGAAGCCCGAGGATC
TAGACAGGATGCTACAGCAACTGGAGAGCGTGGTGAAAGACGAACAACAA
TGGGCCAGGCTCGCTTCTGCCTGTGTCGGGGCCCTCCTCGGACTGCTCCT
CATCCCTTCCCATAATTTTTTTGGTGTGACGTTTCTGGCACTCTTCGTGA
CTTTCCTCACCACGACGCCGGGGCTGGTAGGGGACGCGGCGAGGATGAGT
GGTTATGGCCTCCTGTCGCTCGCCAATGCCCTTGGTCAATTCGAGAAGAA
ATTTGCCGTGTTACGAAGGGTACGTGAGGCCATGTGGGACATGGCCGAGG
CCTCGATCCCGTTTAAACTTGAATTTAAAGATGAAAATTCGTTGAAACAC
TGGCGGAATGCTTACAAAGGAGAGGGTTTTCTCCATCCAGACATAAGGCC
GGCGCCGCCGATGAGGGACGCTCAGTATGTGGAGTACCTCAGGGAGGTGA
AGAAGTGGGTGGAGGTGGAAGAGAGAGAGGTGCTGAGGGCCCTCAGGAAG
AAGGAGGATGAGCGGGCGAGTGGGTTGAGGGAGAGGGAGGAGAGGAGGGA
GAGGATGCAGAAGGTGTTGGTTGGCTTGTGGGAGGGGAGTGCGACGGCGG
CGACGATGGTGGGGGGGATGGTGATGAGTAAGAGGGAGGGAGGGATGGGA
GAGATAGAGAAGGAGTTTAAAGGGGAAGGAGGGATGGACGACGACGTAGC
GTTTTTGAAGAGATTTGTGGAGAGGGAACGGGGGTAGCAGAAGCGTCTCC
AACAACATCAACAACGCAGTGAGGATGGCAATGGAGGGAGATTCGTCACC
GTTTCAATTTAGCCTCTTTGCATTTGGAAGGGGCGACGGAGGGACAGTCA
AAACGTCACCCGCCAGCGGCACAAAAAAGAATAGGCAGCAGCAGCCACCC
CAGAAAAAAGAGGAAGACAAGGGATGATGCCCGAAACTGTGGCCTTGGGA
AGTGGTGGCTTCGCCTCGTTCAATAGCGAATGGAAAGACCAACTCGCCCT
CGCGAAGAAAATCAAGAAGCTGGAGAAGGAGGTCGCTGACGACTACATAC
GGGGATCGAGAGCCAAGGCTGCCCAGTACAGGTATGAGGCTTTGCGGACG
CTGGAAGAGGTGCAGGGCGGTAGGGAGGGAGGGCAGGGCGCGTTGGAGTT
CGACCCTATCATAGCGGGGAAGACCATGAAGAGCCAACGGTTGGAAGTGA
AGGATGCGAAGCTCCTCCTCCACCAGCAGCAACAACAGCAGCAGCAGGAG
CTTCAACAGCCAGGGCAAAGAGAGGAAAGCATGCCCCTGAAGCCCGAGGA
TCTAGACAGGATGCTACAGCAACTGGAGAGCGTGGTGAAAGACGAACAAC
AATGGGCCAGGCTCGCTTCTGCCTGTGTCGGGGCCCTCCTCGGACTGCTC
CTCATCCCTTCCCATAATTTTTTTGGTGTGACGTTTCTGGCACTCTTCGT
GACTTTCCTCACCACGACGCCGGGGCTGGTAGGGGACGCGGCGAGGATGA
GTGGTTATGGCCTCCTGTCGCTCGCCAATGCCCTTGGTCAATTCGAGAAG
AAATTTGCCGTGTTACGAAGGGTACGTGAGGCCATGTGGGACATGGCCGA
GGCCTCGATCCCGTTTAAACTTGAATTTAAAGATGAAAATTCGTTGAAAC
ACTGGCGGAATGCTTACAAAGGAGAGGGTTTTCTCCATCCAGACATAAGG
CCGGCGCCGCCGATGAGGGACGCTCAGTATGTGGAGTACCTCAGGGAGGT
GAAGAAGTGGGTGGAGGTGGAAGAGAGAGAGGTGCTGAGGGCCCTCAGGA
AGAAGGAGGATGAGCGGGCGAGTGGGTTGAGGGAGAGGGAGGAGAGGAGG
GAGAGGATGCAGAAGGTGTTGGTTGGCTTGTGGGAGGGGAGTGCGACGGC
GGCGACGATGGTGGGGGGGATGGTGATGAGTAAGAGGGAGGGAGGGATGG
GAGAGATAGAGAAGGAGTTTAAAGGGGAAGGAGGGATGGACGACGACGTA
GCGTTTTTGAAGAGATTTGTGGAGAGGGAACGGGGGTAGCAGAAGCGTCT
CCAACAACATCAACAACGCAGTGAGGATGGCAATGGAGGGAGATTCGTCA
CCGTTTCAATTTAGCCTCTTTGCATTTGGAAGGGGCGACGGAGGGACAGT
CAAAACGTCACCCGCCAGCGGCACAAAAAAGAATAGGCAGCAGCAGCCAC
CCCAGAAAAAAGAGGAAGACAAGGGATGATGCCCGAAACTGTGGCCTTGG
GAAGTGGTGGCTTCGCCTCGTTCAATAGCGAATGGAAAGACCAACTCGCC
CTCGCGAAGAAAATCAAGAAGCTGGAGAAGGAGGTCGCTGACGACTACAT
ACGGGGATCGAGAGCCAAGGCTGCCCAGTACAGGTATGAGGCTTTGCGGA
CGCTGGAAGAGGTGCAGGGCGGTAGGGAGGGAGGGCAGGGCGCGTTGGAG
TTCGACCCTATCATAGCGGGGAAGACCATGAAGAGCCAACGGTTGGAAGT
GAAGGATGCGAAGCTCCTCCTCCACCAGCAGCAACAACAGCAGCAGCAGG
AGCTTCAACAGCCAGGGCAAAGAGAGGAAAGCATGCCCCTGAAGCCCGAG
GATCTAGACAGGATGCTACAGCAACTGGAGAGCGTGGTGAAAGACGAACA
ACAATGGGCCAGGCTCGCTTCTGCCTGTGTCGGGGCCCTCCTCGGACTGC
TCCTCATCCCTTCCCATAATTTTTTTGGTGTGACGTTTCTGGCACTCTTC
GTGACTTTCCTCACCACGACGCCGGGGCTGGTAGGGGACGCGGCGAGGAT
GAGTGGTTATGGCCTCCTGTCGCTCGCCAATGCCCTTGGTCAATTCGAGA
AGAAATTTGCCGTGTTACGAAGGGTACGTGAGGCCATGTGGGACATGGCC
GAGGCCTCGATCCCGTTTAAACTTGAATTTAAAGATGAAAATTCGTTGAA
ACACTGGCGGAATGCTTACAAAGGAGAGGGTTTTCTCCATCCAGACATAA
GGCCGGCGCCGCCGATGAGGGACGCTCAGTATGTGGAGTACCTCAGGGAG
GTGAAGAAGTGGGTGGAGGTGGAAGAGAGAGAGGTGCTGAGGGCCCTCAG
GAAGAAGGAGGATGAGCGGGCGAGTGGGTTGAGGGAGAGGGAGGAGAGGA
GGGAGAGGATGCAGAAGGTGTTGGTTGGCTTGTGGGAGGGGAGTGCGACG
GCGGCGACGATGGTGGGGGGGATGGTGATGAGTAAGAGGGAGGGAGGGAT
GGGAGAGATAGAGAAGGAGTTTAAAGGGGAAGGAGGGATGGACGACGACG
TAGCGTTTTTGAAGAGATTTGTGGAGAGGGAACGGGGGTAGCAGAAGCGT
CTCCAACAACATCAACAACGCAGTGAGGATGGCAATGGAGGGAGATTCGT
CACCGTTTCAATTTAGCCTCTTTGCATTTGGAAGGGGCGACGGAGGGACA
GTCAAAACGTCACCCGCCAGCGGCACAAAAAAGAATAGGCAGCAGCAGCC
ACCCCAGAAAAAAGAGGAAGACAAGGGATGATGCCCGAAACTGTGGCCTT
GGGAAG back to top
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