jgi.p|Nanoce1779_2|286404, mRNA_1833 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|286404
Unique Name	mRNA_1833
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1653
Alignment location	scaffold_4:119262..121649 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	286490
Track	FilteredModels2
ProteinId	286404

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:119262..121649 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|286404	gene_1833	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|286404	mRNA_1833-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1833	CDS_1833	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:119262..121649+
coding sequence from alignment at scaffold_4:119262..121649+

mRNA sequence

>mRNA_1833 ID=mRNA_1833|Name=jgi.p|Nanoce1779_2|286404|organism=Nannochloropsis oceanica|type=mRNA|length=1653bp
TGACTTTGGATGAGCCGACGACGAATTTGGACCATGAGAATAAGGGAGGG
CTGGCAGGAGCAATCGCGAGGTTGATTGCCGAGAGGGGCAGGCAGCAGAA
TTTTCAATTGATTGTGATTACGCACGATGAGGACTTTGTGGATATGGTGA
AGCAGGAGCTGAGCACGCAGGCGGGAGTTTCGATGCCGGAGTACTACTGG
CGCGTTTCCCGGGAACCGGCACCTGGTGGACGGGCTTACTCCACCATCCA
GGCATTAAGACTCGTACCGCACCAAGATGCCCGCACGCAAGCCCGCTGCT
TCCAAGCGTCGTGCGTCCCGTGCGGTCAAGGAGGAAGAGGAGGAGGAGGC
AGAGAAGGAGATGCCGACTCAACAAGCCTCAATAGCAGCCCCCAAAAGCG
AAGCGCCTTCCGATGAAGCGGAGGATGGAGAAGTGGGGGAGGAAGAAGAG
GAGGAAAAGGAAACTCAAGCTCCCCGTAGCAAACGTGGGCGGTCCTCTGC
GAGAGCCTCGACCACGTATGATGATGACGACGAGGAAGACGAGGAGGAGG
AAGACGAGGAGGAGGAAGACGAGGAGGGAGAGGAGGAGGGGCACGGCGCC
CCACGGCGCCGGCGCAAGGCATCTTTTGCCCGTAAGAAGAGCTACACAGC
GAAGGCTTCCCAGCACGCAGTTTATTTTTACCAGAAGCAGGTGGACACGA
CATTTTCCTTTTCCCAGGCTGATGACGGCCCGGTGGTGAACCAACGCGAG
ACCCAGGCGAGCCAGGACGAAATGCGCCCGATAGACGAGAAGAGCTTCCA
AGGCCTGAGCCATGATCAGCAGAAGCAGGCAGTGTCAGAGGCGATGCGCT
ACATTCTCTTCAAGGCGGCGCGGCGGGAGCCAGTGCATCGGGTGAAGCTC
CACGACGAGGTGGTGAAGAAGTATGGCAAGTCCCTCGTGCGACCCGTGCT
CAAGGCCGCCGCCGAGCAGCTTGAGTCCACCTTTGGCTATACCCTCGTTG
CTCCTCCTGCCTATCGCTTTCCGCGGGCTTTGGACCAGGACACATTCTAC
CTCATCACGAAATTCCGGTCGCCTTCGTTGAGTCAATCGATAAACGCGTA
CGGGAAGGACGTGGGGTATCGGGGTTTCTGCATGCTGGTCATGAGCTTGG
TCTATTGCTCTTCGTCCAAGATAACCGAGCGGGCCTTGTTCAAGCAGTTG
ATGGAAGCACAGGACGGGTTGAAGATGCATGCGAAGGTCGGGGGGGGAGG
AGGAGGAGGATTATGGGAGGGGGAAGGACAGGAGATGATTCTTGCAGGGG
AGCTGGAGGGAGTGGGCGATGTCGGGGTTGCGCTGGAAAGGATGAAAAAG
GAGCAGTACCTGATCCGGGAGAGAGAGCAGCAGGAGGTGGGGACAGGAGG
GAGGGTGAGGAATGAGTTTTATTACCGGCTGGGGCAGCGGGCCTTCGTGG
AGGTGGGTCCTCGGCAAATTTTGAAATTTTTGGCGGAGGTCCAGAATCAG
GATGTTGACAAGGCGATGATGGTGGAGATTGAGACGGAGGAGAAGAGGGA
GCAGAGATAGGGATAGCGATAGGAAAAGAGGGAGGACGGGAAGAAGGAGG
GAGGAGGGAGGAGAGGAGGGAAGCAAAAATCGGAAAAAGGAATCAGATGG
AAA

protein sequence of jgi.p|Nanoce1779_2|286404

>mRNA_1833-protein ID=mRNA_1833-protein|Name=jgi.p|Nanoce1779_2|286404|organism=Nannochloropsis oceanica|type=polypeptide|length=428bp
MPARKPAASKRRASRAVKEEEEEEAEKEMPTQQASIAAPKSEAPSDEAED
GEVGEEEEEEKETQAPRSKRGRSSARASTTYDDDDEEDEEEEDEEEEDEE
GEEEGHGAPRRRRKASFARKKSYTAKASQHAVYFYQKQVDTTFSFSQADD
GPVVNQRETQASQDEMRPIDEKSFQGLSHDQQKQAVSEAMRYILFKAARR
EPVHRVKLHDEVVKKYGKSLVRPVLKAAAEQLESTFGYTLVAPPAYRFPR
ALDQDTFYLITKFRSPSLSQSINAYGKDVGYRGFCMLVMSLVYCSSSKIT
ERALFKQLMEAQDGLKMHAKVGGGGGGGLWEGEGQEMILAGELEGVGDVG
VALERMKKEQYLIREREQQEVGTGGRVRNEFYYRLGQRAFVEVGPRQILK
FLAEVQNQDVDKAMMVEIETEEKREQR*

mRNA from alignment at scaffold_4:119262..121649+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1833 ID=mRNA_1833|Name=jgi.p|Nanoce1779_2|286404|organism=Nannochloropsis oceanica|type=mRNA|length=2388bp|location=Sequence derived from alignment at scaffold_4:119262..121649+ (Nannochloropsis oceanica)
TGACTTTGGATGAGCCGACGACGAATTTGGACCATGAGAATAAGGGAGGG
CTGGCAGGAGCAATCGCGAGGTTGATTGCCGAGAGGGGCAGGCAGCAGAA
TTTTCAATTGATTGTGATTACGCACGATGAGGACTTTGTGGATATGGTGA
AGCAGGAGCTGAGCACGCAGGTATGGCAGGGAGGGAGGGAGGGAGGGAGG
AGTGTAGACACTGCTTTTCTGCTGTTTCCTTCTTCCACACCAAGAATCAC
TTTCCCAAAAAGTCATTTACATAAGATCCCTTTCTACATATCCCCCTCCT
TTTTCTTCCCTCGAATCTGACAACCGTACAGGCGGGAGTTTCGATGCCGG
AGTACTACTGGCGCGTTTCCCGGGAACCGGCACCTGGTGGACGGGCTTAC
TCCACCATCCAGGTCTGTGAGTGGGGCACCATCTAAGGTGGAGAAGGTAA
AGGGAAAAAGAGGGAGGGAAAGAGTGAACAAATGAGGAGGGAAGGGCAGA
CGGAGGGAAGAGTGTTTGTGCGTGGACAAGGGGGAGAGATGCAGGTGGCC
GGGCCGGAAAGTCCGGCCCTGGGGCTGGAGATCAAGAAAGTTAGACACAC
AGAGTCAATAGAAGCATATGTACATAAGAAGGTTCCGAATGGCATAGGAT
CTTGGACCCGATATGTCTGTTATGAACAGTAGCATCAGAACTCAGAAAGC
TCAGAAGGGATGGGAGCGTAGAGAGAGAGTGCGCGACAAGACAAGGATAC
AAATGAAAAACAAACCACGATATTCAGCTCGTGATTTATTATTTTACCTC
GTATGGACACCGCAATACAATTACGTCGCTTGAGCTCGGGCTGGCAACAA
ATCCACTATAGCAAGGGTGGGGAGGTCGCCAAAGTGTCGAAGTAAATAAA
TTCTTCGTCGGCGGTTGCGTTCCCGCGTTCTTTATTATTGCACTATAAGC
GCTCTAAGCATCTTACCCTCTCCTCCCCAAACACAGGCATTAAGACTCGT
ACCGCACCAAGATGCCCGCACGCAAGCCCGCTGCTTCCAAGCGTCGTGCG
TCCCGTGCGGTCAAGGAGGAAGAGGAGGAGGAGGCAGAGAAGGAGATGCC
GACTCAACAAGCCTCAATAGCAGCCCCCAAAAGCGAAGCGCCTTCCGATG
AAGCGGAGGATGGAGAAGTGGGGGAGGAAGAAGAGGAGGAAAAGGAAACT
CAAGCTCCCCGTAGCAAACGTGGGCGGTCCTCTGCGAGAGCCTCGACCAC
GTATGATGATGACGACGAGGAAGACGAGGAGGAGGAAGACGAGGAGGAGG
AAGACGAGGAGGGAGAGGAGGAGGGGCACGGCGCCCCACGGCGCCGGCGC
AAGGCATCTTTTGCCCGTAAGAAGAGCTACACAGCGAAGGCTTCCCAGCA
CGCAGTTTATTTTTACCAGAAGCAGGTGGACACGACATTTTCCTTTTCCC
AGGCTGATGACGGCCCGGTGGTGAACCAACGCGAGACCCAGGCGAGCCAG
GACGAAATGCGCCCGATAGACGAGAAGAGCTTCCAAGGCCTGAGCCATGA
TCAGCAGAAGCAGGCAGTGTCAGAGGCGATGCGCTACATTCTCTTCAAGG
CGGCGCGGCGGGAGCCAGTGCATCGGGTGAAGCTCCACGACGAGGTGGTG
AAGAAGTATGGCAAGTCCCTCGTGCGACCCGTGCTCAAGGCCGCCGCCGA
GCAGCTTGAGTCCACCTTTGGCTATACCCTCGTTGCTCCTCCTGCCTATC
GCTTTCCGCGGGCTTTGGACCAGGACACATTCTACCTCATCACGAAATTC
CGGTCGCCTTCGTTGAGTCAATCGATAAACGCGTACGGGAAGGACGTGGG
GTATCGGGGTTTCTGCATGCTGGTCATGAGCTTGGTCTATTGCTCTTCGT
CCAAGATAACCGAGCGGGCCTTGTTCAAGCAGTTGATGGAAGCACAGGAC
GGGTTGAAGATGCATGCGAAGGTCGGGGGGGGAGGAGGAGGAGGATTATG
GGAGGGGGAAGGACAGGAGATGATTCTTGCAGGGGAGCTGGAGGGAGTGG
GCGATGTCGGGGTTGCGCTGGAAAGGATGAAAAAGGAGCAGTACCTGATC
CGGGAGAGAGAGCAGCAGGAGGTGGGGACAGGAGGGAGGGTGAGGAATGA
GTTTTATTACCGGCTGGGGCAGCGGGCCTTCGTGGAGGTGGGTCCTCGGC
AAATTTTGAAATTTTTGGCGGAGGTCCAGAATCAGGATGTTGACAAGGCG
ATGATGGTGGAGATTGAGACGGAGGAGAAGAGGGAGCAGAGATAGGGATA
GCGATAGGAAAAGAGGGAGGACGGGAAGAAGGAGGGAGGAGGGAGGAGAG
GAGGGAAGCAAAAATCGGAAAAAGGAATCAGATGGAAA

Coding sequence (CDS) from alignment at scaffold_4:119262..121649+

>mRNA_1833 ID=mRNA_1833|Name=jgi.p|Nanoce1779_2|286404|organism=Nannochloropsis oceanica|type=CDS|length=1284bp|location=Sequence derived from alignment at scaffold_4:119262..121649+ (Nannochloropsis oceanica)
ATGCCCGCACGCAAGCCCGCTGCTTCCAAGCGTCGTGCGTCCCGTGCGGT
CAAGGAGGAAGAGGAGGAGGAGGCAGAGAAGGAGATGCCGACTCAACAAG
CCTCAATAGCAGCCCCCAAAAGCGAAGCGCCTTCCGATGAAGCGGAGGAT
GGAGAAGTGGGGGAGGAAGAAGAGGAGGAAAAGGAAACTCAAGCTCCCCG
TAGCAAACGTGGGCGGTCCTCTGCGAGAGCCTCGACCACGTATGATGATG
ACGACGAGGAAGACGAGGAGGAGGAAGACGAGGAGGAGGAAGACGAGGAG
GGAGAGGAGGAGGGGCACGGCGCCCCACGGCGCCGGCGCAAGGCATCTTT
TGCCCGTAAGAAGAGCTACACAGCGAAGGCTTCCCAGCACGCAGTTTATT
TTTACCAGAAGCAGGTGGACACGACATTTTCCTTTTCCCAGGCTGATGAC
GGCCCGGTGGTGAACCAACGCGAGACCCAGGCGAGCCAGGACGAAATGCG
CCCGATAGACGAGAAGAGCTTCCAAGGCCTGAGCCATGATCAGCAGAAGC
AGGCAGTGTCAGAGGCGATGCGCTACATTCTCTTCAAGGCGGCGCGGCGG
GAGCCAGTGCATCGGGTGAAGCTCCACGACGAGGTGGTGAAGAAGTATGG
CAAGTCCCTCGTGCGACCCGTGCTCAAGGCCGCCGCCGAGCAGCTTGAGT
CCACCTTTGGCTATACCCTCGTTGCTCCTCCTGCCTATCGCTTTCCGCGG
GCTTTGGACCAGGACACATTCTACCTCATCACGAAATTCCGGTCGCCTTC
GTTGAGTCAATCGATAAACGCGTACGGGAAGGACGTGGGGTATCGGGGTT
TCTGCATGCTGGTCATGAGCTTGGTCTATTGCTCTTCGTCCAAGATAACC
GAGCGGGCCTTGTTCAAGCAGTTGATGGAAGCACAGGACGGGTTGAAGAT
GCATGCGAAGGTCGGGGGGGGAGGAGGAGGAGGATTATGGGAGGGGGAAG
GACAGGAGATGATTCTTGCAGGGGAGCTGGAGGGAGTGGGCGATGTCGGG
GTTGCGCTGGAAAGGATGAAAAAGGAGCAGTACCTGATCCGGGAGAGAGA
GCAGCAGGAGGTGGGGACAGGAGGGAGGGTGAGGAATGAGTTTTATTACC
GGCTGGGGCAGCGGGCCTTCGTGGAGGTGGGTCCTCGGCAAATTTTGAAA
TTTTTGGCGGAGGTCCAGAATCAGGATGTTGACAAGGCGATGATGGTGGA
GATTGAGACGGAGGAGAAGAGGGAGCAGAGATAG

Synonyms

Publications