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Properties
| Property Name | Value |
|---|
| TranscriptId | 578171 |
| Track | FilteredModels2 |
| ProteinId | 578085 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_4 | supercontig | scaffold_4:112539..114387 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1831 ID=mRNA_1831|Name=jgi.p|Nanoce1779_2|578085|organism=Nannochloropsis oceanica|type=mRNA|length=1071bp
AGCTCAAGCCAAAGCCCACTATCTAAGCCAAACATCAAGAAGCCACGCCC
ACAATCGCACAACACACGCCATGACAAGTGCAACATCAATCGACGTCCGA
AGCGACAAAAAAACCAAGAAGTCCAAGGGCCACCAATGCGACGAGGATGA
CAACGACGACACCATCGAGCCCGTCGAGGTGCAAGAGGAAACAGCGACAG
CAGCAGCGGCGGAGGAAGAAGGAGATGATGCCGCAGCCTCCTCCGGTCGC
AAGCGCAAGCGAAAACGTATCCGCAAATTGACGAAGAAGGGCAAGGAGGG
CGAGAACGACGATAAGGACGAGGACGATGAGGATGGAGGTAGAGATGACG
ATGCGAGTCTGCCACTGCGGGCCTCCTCCTCTATCTCACCTACCGCTGCT
GCTCCAGGCACAGTCTATGTGGAAGGGATCTCGTACCAAGCCACAGAAGA
TGACCTCATTCGCTTCTTCCAAGATAAAGGCTGTGGCAAAGTGAAGGAAG
TGCGCATGCCTCGATGGCAGGACAGTGGGCGTCCGCGGGGATATGCACAC
ATCGAATTTAAGAAGGGAGGGGAGGAGAGCGTGGGAAAAGCGTTGGCGTT
GAACGGAGTGAGCATGATGGGGAGATATTTGACCGTGCAAATGGCGCAGG
CACCAAAGGGAGGGGGAGCAGCAGCAGTAACACCTGGGAAAAAACCACCT
GGCTGTGACACCGTCTTCGTTAAGAATCTGCCCTACAACATCACCGAAGA
CACCGTCAGGGACGCTTTCACCTTCTGTGGCAAGATCAGAACCATACGCC
TGGCCATCTGGCAGCACACACAGCAACAGAAAGGCTTCTGCTACATCCAA
TTTGAGAAGGAGAACGCCGCCGAAATCGCGGTGAAGAAGCAGGGGGTCAT
TCAGGTGGGCGGGAGGAAGGTCTTTGTCGACTATGAGACGGGAGCCCCCA
AGGCCAGTTACAAAGCCCCGAATGGAAGGCAGTGGAGTAAGGTGCAAGGG
AAGGGAGAAACGGCGCGAGGAGGAGGAGGGCACCGGCCACCAAAATAAAG
AAAGAAAAAAAGGGGGAGAGG back to topprotein sequence of jgi.p|Nanoce1779_2|578085 >mRNA_1831-protein ID=mRNA_1831-protein|Name=jgi.p|Nanoce1779_2|578085|organism=Nannochloropsis oceanica|type=polypeptide|length=326bp
MTSATSIDVRSDKKTKKSKGHQCDEDDNDDTIEPVEVQEETATAAAAEEE
GDDAAASSGRKRKRKRIRKLTKKGKEGENDDKDEDDEDGGRDDDASLPLR
ASSSISPTAAAPGTVYVEGISYQATEDDLIRFFQDKGCGKVKEVRMPRWQ
DSGRPRGYAHIEFKKGGEESVGKALALNGVSMMGRYLTVQMAQAPKGGGA
AAVTPGKKPPGCDTVFVKNLPYNITEDTVRDAFTFCGKIRTIRLAIWQHT
QQQKGFCYIQFEKENAAEIAVKKQGVIQVGGRKVFVDYETGAPKASYKAP
NGRQWSKVQGKGETARGGGGHRPPK* back to topmRNA from alignment at scaffold_4:112539..114387- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1831 ID=mRNA_1831|Name=jgi.p|Nanoce1779_2|578085|organism=Nannochloropsis oceanica|type=mRNA|length=1849bp|location=Sequence derived from alignment at scaffold_4:112539..114387- (Nannochloropsis oceanica)
AGCTCAAGCCAAAGCCCACTATCTAAGCCAAACATCAAGAAGCCACGCCC
ACAATCGCACAACACACGCCATGACAAGTGCAACATCAATCGACGGTACG
TGTGTCGCTACACTTGTCGTCTGCGCCTGGCTCAGTCTCCGCCCGCATTC
CCGTACTCCCCCAGTCTTGCGGGTATAGGTGGTTGGTTGCAGTAATGCCC
AGCCGCTTCCTCTCTCCTTGCCGTCACCCACCACCCAGCCTCCATTTCGC
ACTCAATTTAGACCATACTTGTCCTCCGCGTTCTTGGTATGATTCTGTCA
TTGTCTTCCTTACCTGCTCTAATAGACATTCCCACCCCATCCCATACCAT
TCCCCCATCCCCCCATCCCCCCATCCTCACCACCTCCACTGCTCCCTTTA
CAGTCCGAAGCGACAAAAAAACCAAGAAGTCCAAGGGCCACCAATGCGAC
GAGGATGACAACGACGACACCATCGAGCCCGTCGAGGTGCAAGAGGAAAC
AGCGACAGCAGCAGCGGCGGAGGAAGAAGGAGATGATGCCGCAGCCTCCT
CCGGTCGCAAGCGCAAGCGAAAACGTATCCGCAAATTGACGAAGAAGGGC
AAGGAGGGCGAGAACGACGATAAGGACGAGGACGATGAGGATGGAGGTAG
AGATGACGATGCGAGTCTGCCACTGCGGGCCTCCTCCTCTATCTCACCTA
CCGCTGCTGCTCCAGGCACAGTCTATGTGGAAGGGATCTCGTACCAAGCC
ACAGAAGATGACCTCATTCGCTTCTTCCAAGATAAAGGCTGTGGCAAAGT
GAAGGAAGTGCGCATGCCTCGATGGCAGGACAGTGGGCGTCCGCGGGGAT
ATGCACACATCGAATTTAAGAAGGGAGGGGAGGAGAGCGTGGGAAAAGCG
TTGGCGTTGAACGGAGTGAGCATGATGGGGAGATATTTGACCGTGCAAAT
GGCGCAGGCACCAAAGGGAGGGGGAGCAGCAGCAGTAACACCTGGGAAAA
AACCACCTGGTATGTTTTCGAATGTTGGGGGGGGGGGGGGGAAGGATGGG
AGGGAGGGGAAGGGCGGGAGGGGGAAGGAAGGAGGGGAGAGTGTGTCCAG
ATGATGATAAAAATATAAAAAGTTTGAGATCTGCAATTTTTTTGAAGAAC
TTTATACGAGTAGTGAAATGATGGGCACACATTAGAAAGGGATGTACCTA
AATTAAGAGACATTGAGGAGAGCGACCAAGTGAGTGGATGCTGGCGTTTG
GGTTCACGGTTTACTCACCTCTCCGTCCCCCCCTCCCTCTCCGTCCTTGC
CTCCCTTCCTACCTCTCATCACAGGCTGTGACACCGTCTTCGTTAAGAAT
CTGTAAGTCCTTGACATTCTTTTGGCCATTTTACTTTTCCGTTCTTCGCT
CTCCCGCCGTCTTTCCCATCCGCCTCCCAAATTTCCCAAGACTCACCCTC
TCTCTCTCCCTCCCTCTTTCATTGCCTTCCTCCCTCCTTCTTTCCCCCTC
CTTCCAGGCCCTACAACATCACCGAAGACACCGTCAGGGACGCTTTCACC
TTCTGTGGCAAGATCAGAACCATACGCCTGGCCATCTGGCAGCACACACA
GCAACAGAAAGGCTTCTGCTACATCCAATTTGAGAAGGAGAACGCCGCCG
AAATCGCGGTGAAGAAGCAGGGGGTCATTCAGGTGGGCGGGAGGAAGGTC
TTTGTCGACTATGAGACGGGAGCCCCCAAGGCCAGTTACAAAGCCCCGAA
TGGAAGGCAGTGGAGTAAGGTGCAAGGGAAGGGAGAAACGGCGCGAGGAG
GAGGAGGGCACCGGCCACCAAAATAAAGAAAGAAAAAAAGGGGGAGAGG back to topCoding sequence (CDS) from alignment at scaffold_4:112539..114387- >mRNA_1831 ID=mRNA_1831|Name=jgi.p|Nanoce1779_2|578085|organism=Nannochloropsis oceanica|type=CDS|length=3912bp|location=Sequence derived from alignment at scaffold_4:112539..114387- (Nannochloropsis oceanica)
GCCCTACAACATCACCGAAGACACCGTCAGGGACGCTTTCACCTTCTGTG
GCAAGATCAGAACCATACGCCTGGCCATCTGGCAGCACACACAGCAACAG
AAAGGCTTCTGCTACATCCAATTTGAGAAGGAGAACGCCGCCGAAATCGC
GGTGAAGAAGCAGGGGGTCATTCAGGTGGGCGGGAGGAAGGTCTTTGTCG
ACTATGAGACGGGAGCCCCCAAGGCCAGTTACAAAGCCCCGAATGGAAGG
CAGTGGAGTAAGGTGCAAGGGAAGGGAGAAACGGCGCGAGGAGGAGGAGG
GCACCGGCCACCAAAATAAGCTGTGACACCGTCTTCGTTAAGAATCTTCC
GAAGCGACAAAAAAACCAAGAAGTCCAAGGGCCACCAATGCGACGAGGAT
GACAACGACGACACCATCGAGCCCGTCGAGGTGCAAGAGGAAACAGCGAC
AGCAGCAGCGGCGGAGGAAGAAGGAGATGATGCCGCAGCCTCCTCCGGTC
GCAAGCGCAAGCGAAAACGTATCCGCAAATTGACGAAGAAGGGCAAGGAG
GGCGAGAACGACGATAAGGACGAGGACGATGAGGATGGAGGTAGAGATGA
CGATGCGAGTCTGCCACTGCGGGCCTCCTCCTCTATCTCACCTACCGCTG
CTGCTCCAGGCACAGTCTATGTGGAAGGGATCTCGTACCAAGCCACAGAA
GATGACCTCATTCGCTTCTTCCAAGATAAAGGCTGTGGCAAAGTGAAGGA
AGTGCGCATGCCTCGATGGCAGGACAGTGGGCGTCCGCGGGGATATGCAC
ACATCGAATTTAAGAAGGGAGGGGAGGAGAGCGTGGGAAAAGCGTTGGCG
TTGAACGGAGTGAGCATGATGGGGAGATATTTGACCGTGCAAATGGCGCA
GGCACCAAAGGGAGGGGGAGCAGCAGCAGTAACACCTGGGAAAAAACCAC
CTGATGACAAGTGCAACATCAATCGACGGCCCTACAACATCACCGAAGAC
ACCGTCAGGGACGCTTTCACCTTCTGTGGCAAGATCAGAACCATACGCCT
GGCCATCTGGCAGCACACACAGCAACAGAAAGGCTTCTGCTACATCCAAT
TTGAGAAGGAGAACGCCGCCGAAATCGCGGTGAAGAAGCAGGGGGTCATT
CAGGTGGGCGGGAGGAAGGTCTTTGTCGACTATGAGACGGGAGCCCCCAA
GGCCAGTTACAAAGCCCCGAATGGAAGGCAGTGGAGTAAGGTGCAAGGGA
AGGGAGAAACGGCGCGAGGAGGAGGAGGGCACCGGCCACCAAAATAAGCT
GTGACACCGTCTTCGTTAAGAATCTTCCGAAGCGACAAAAAAACCAAGAA
GTCCAAGGGCCACCAATGCGACGAGGATGACAACGACGACACCATCGAGC
CCGTCGAGGTGCAAGAGGAAACAGCGACAGCAGCAGCGGCGGAGGAAGAA
GGAGATGATGCCGCAGCCTCCTCCGGTCGCAAGCGCAAGCGAAAACGTAT
CCGCAAATTGACGAAGAAGGGCAAGGAGGGCGAGAACGACGATAAGGACG
AGGACGATGAGGATGGAGGTAGAGATGACGATGCGAGTCTGCCACTGCGG
GCCTCCTCCTCTATCTCACCTACCGCTGCTGCTCCAGGCACAGTCTATGT
GGAAGGGATCTCGTACCAAGCCACAGAAGATGACCTCATTCGCTTCTTCC
AAGATAAAGGCTGTGGCAAAGTGAAGGAAGTGCGCATGCCTCGATGGCAG
GACAGTGGGCGTCCGCGGGGATATGCACACATCGAATTTAAGAAGGGAGG
GGAGGAGAGCGTGGGAAAAGCGTTGGCGTTGAACGGAGTGAGCATGATGG
GGAGATATTTGACCGTGCAAATGGCGCAGGCACCAAAGGGAGGGGGAGCA
GCAGCAGTAACACCTGGGAAAAAACCACCTGATGACAAGTGCAACATCAA
TCGACGGCCCTACAACATCACCGAAGACACCGTCAGGGACGCTTTCACCT
TCTGTGGCAAGATCAGAACCATACGCCTGGCCATCTGGCAGCACACACAG
CAACAGAAAGGCTTCTGCTACATCCAATTTGAGAAGGAGAACGCCGCCGA
AATCGCGGTGAAGAAGCAGGGGGTCATTCAGGTGGGCGGGAGGAAGGTCT
TTGTCGACTATGAGACGGGAGCCCCCAAGGCCAGTTACAAAGCCCCGAAT
GGAAGGCAGTGGAGTAAGGTGCAAGGGAAGGGAGAAACGGCGCGAGGAGG
AGGAGGGCACCGGCCACCAAAATAAGCTGTGACACCGTCTTCGTTAAGAA
TCTTCCGAAGCGACAAAAAAACCAAGAAGTCCAAGGGCCACCAATGCGAC
GAGGATGACAACGACGACACCATCGAGCCCGTCGAGGTGCAAGAGGAAAC
AGCGACAGCAGCAGCGGCGGAGGAAGAAGGAGATGATGCCGCAGCCTCCT
CCGGTCGCAAGCGCAAGCGAAAACGTATCCGCAAATTGACGAAGAAGGGC
AAGGAGGGCGAGAACGACGATAAGGACGAGGACGATGAGGATGGAGGTAG
AGATGACGATGCGAGTCTGCCACTGCGGGCCTCCTCCTCTATCTCACCTA
CCGCTGCTGCTCCAGGCACAGTCTATGTGGAAGGGATCTCGTACCAAGCC
ACAGAAGATGACCTCATTCGCTTCTTCCAAGATAAAGGCTGTGGCAAAGT
GAAGGAAGTGCGCATGCCTCGATGGCAGGACAGTGGGCGTCCGCGGGGAT
ATGCACACATCGAATTTAAGAAGGGAGGGGAGGAGAGCGTGGGAAAAGCG
TTGGCGTTGAACGGAGTGAGCATGATGGGGAGATATTTGACCGTGCAAAT
GGCGCAGGCACCAAAGGGAGGGGGAGCAGCAGCAGTAACACCTGGGAAAA
AACCACCTGATGACAAGTGCAACATCAATCGACGGCCCTACAACATCACC
GAAGACACCGTCAGGGACGCTTTCACCTTCTGTGGCAAGATCAGAACCAT
ACGCCTGGCCATCTGGCAGCACACACAGCAACAGAAAGGCTTCTGCTACA
TCCAATTTGAGAAGGAGAACGCCGCCGAAATCGCGGTGAAGAAGCAGGGG
GTCATTCAGGTGGGCGGGAGGAAGGTCTTTGTCGACTATGAGACGGGAGC
CCCCAAGGCCAGTTACAAAGCCCCGAATGGAAGGCAGTGGAGTAAGGTGC
AAGGGAAGGGAGAAACGGCGCGAGGAGGAGGAGGGCACCGGCCACCAAAA
TAAGCTGTGACACCGTCTTCGTTAAGAATCTTCCGAAGCGACAAAAAAAC
CAAGAAGTCCAAGGGCCACCAATGCGACGAGGATGACAACGACGACACCA
TCGAGCCCGTCGAGGTGCAAGAGGAAACAGCGACAGCAGCAGCGGCGGAG
GAAGAAGGAGATGATGCCGCAGCCTCCTCCGGTCGCAAGCGCAAGCGAAA
ACGTATCCGCAAATTGACGAAGAAGGGCAAGGAGGGCGAGAACGACGATA
AGGACGAGGACGATGAGGATGGAGGTAGAGATGACGATGCGAGTCTGCCA
CTGCGGGCCTCCTCCTCTATCTCACCTACCGCTGCTGCTCCAGGCACAGT
CTATGTGGAAGGGATCTCGTACCAAGCCACAGAAGATGACCTCATTCGCT
TCTTCCAAGATAAAGGCTGTGGCAAAGTGAAGGAAGTGCGCATGCCTCGA
TGGCAGGACAGTGGGCGTCCGCGGGGATATGCACACATCGAATTTAAGAA
GGGAGGGGAGGAGAGCGTGGGAAAAGCGTTGGCGTTGAACGGAGTGAGCA
TGATGGGGAGATATTTGACCGTGCAAATGGCGCAGGCACCAAAGGGAGGG
GGAGCAGCAGCAGTAACACCTGGGAAAAAACCACCTGATGACAAGTGCAA
CATCAATCGACG back to top
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