jgi.p|Nanoce1779_2|578081, mRNA_1830 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578081
Unique NamemRNA_1830
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1346
Alignment locationscaffold_4:111152..112497 -

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Properties
Property NameValue
TranscriptId578167
TrackFilteredModels2
ProteinId578081
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:111152..112497 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578081gene_1830Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578081mRNA_1830-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1830CDS_1830Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1830 ID=mRNA_1830|Name=jgi.p|Nanoce1779_2|578081|organism=Nannochloropsis oceanica|type=mRNA|length=1346bp
GCGAGTGCATGCTCCATCTAATTTCACTTTATCTCTGGTTGTGTATTCAC
TTTACGTATGAGTGAAATTTGAGTCTCGCATATCAAGCTTTGCCCGGGGT
CCTGCCGTTGCAGGTGTATGGATCGTTCAAGCCGTAAAGGCAGTCACCCA
TCACTTCGCCACCCACACAACGAAGCAATTATCTATTCGTGCCTTGTGCG
TGCACGTCATCTCGTCTCGCTCTCTCTACTCCATCCCTGACTTACGTTCG
CTCTTCCTCTTTCTCTGCTCTGCCTCTTTTACGCCAAAATTTTTTCTGTC
ATGTTAACTTTCATTTTTCTTTCTCGTCATCCCTTCTCTCTACATTACCT
TCCTCCCTCATATAGTCCTCTTTATTCTCTGCTGGGCGGCTCGCTTAGGG
ATTCATCTTTTCTGCTTTTTCATCTTAATTTTCTTCTTCTACTACTTCTG
ACTCAAGATCTAAACACTCTACTCCCACTGCTAATTTACCTACATTACCA
ACACATGTCCTTCGTGGGCCTTAAATTCAAAATTCTCTATCGAACAAGAC
CCTCAAAATGAGCTGAAAGCCCTTCGAAGCGTCTCCTGACGTATTGACAA
AGCGAGGGACGGCGGGCAGGAAGGTGGGAGGGTGGGCAGGAGGGAAGGGG
GGGGAGAGAAGGTGCATGGTTTTGGAGGCAGTGTTACACCCTCCTTGGCC
CTGGCAAGTTTCACTCCACTCTCTCTATCGCTCTTTCTCTCTATTCATTC
AAGCATGGCACTACTTTCTTGTTACTTTCTCAACCATCAATAGCTACATG
ACAAAAACCTTTTCCTCTTCTCTTTTCCCCCTCTTTCTCCTCCTTTCCCT
CCCCCACCTCCTAAAATCCTCCTTCCCTTTGCATAGCCCACATTGCGCGG
GTCGCCCGAATCTTTCCCACACACACAGACACCCTGAATCCTTTCAAAAC
ACAGACGCCCTGAATCCTTTCCTCACACACAGACAGCCTGAATCCTTTCC
TCTCCCTCAAAGGGTGGTACACCCATAACAAAAATGTCGGACTGTATCAA
TCAGGTGTAGGCCAACCCTAGATAAAATGGAGGTACTGGGCACGTCCCAC
CAGCTCCCGCACGCCAAACAATACTCCATCCGCTGTGCATTGCATCACTA
AACAAAACCATCCTATTCACGCTCCTCCCCCTCCCTCCCTCCCTCGTTCT
CTACCTCCGTGGGCTTCTATTGAAGGCCCGCCGCCCATGCCGGCACGGGC
AACAAAGACGGCAAGACCGGCCGTGGAAGCAAACCCGGCGAAAAAATCGG
CACTACACCCCCCCCTATCCCTCCCTGTCTCCCCTCCCCTAGATCC
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protein sequence of jgi.p|Nanoce1779_2|578081

>mRNA_1830-protein ID=mRNA_1830-protein|Name=jgi.p|Nanoce1779_2|578081|organism=Nannochloropsis oceanica|type=polypeptide|length=121bp
MVLEAVLHPPWPWQVSLHSLYRSFSLFIQAWHYFLVTFSTINSYMTKTFS
SSLFPLFLLLSLPHLLKSSFPLHSPHCAGRPNLSHTHRHPESFQNTDALN
PFLTHRQPESFPLPQRVVHP*
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mRNA from alignment at scaffold_4:111152..112497-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1830 ID=mRNA_1830|Name=jgi.p|Nanoce1779_2|578081|organism=Nannochloropsis oceanica|type=mRNA|length=1346bp|location=Sequence derived from alignment at scaffold_4:111152..112497- (Nannochloropsis oceanica)
GCGAGTGCATGCTCCATCTAATTTCACTTTATCTCTGGTTGTGTATTCAC
TTTACGTATGAGTGAAATTTGAGTCTCGCATATCAAGCTTTGCCCGGGGT
CCTGCCGTTGCAGGTGTATGGATCGTTCAAGCCGTAAAGGCAGTCACCCA
TCACTTCGCCACCCACACAACGAAGCAATTATCTATTCGTGCCTTGTGCG
TGCACGTCATCTCGTCTCGCTCTCTCTACTCCATCCCTGACTTACGTTCG
CTCTTCCTCTTTCTCTGCTCTGCCTCTTTTACGCCAAAATTTTTTCTGTC
ATGTTAACTTTCATTTTTCTTTCTCGTCATCCCTTCTCTCTACATTACCT
TCCTCCCTCATATAGTCCTCTTTATTCTCTGCTGGGCGGCTCGCTTAGGG
ATTCATCTTTTCTGCTTTTTCATCTTAATTTTCTTCTTCTACTACTTCTG
ACTCAAGATCTAAACACTCTACTCCCACTGCTAATTTACCTACATTACCA
ACACATGTCCTTCGTGGGCCTTAAATTCAAAATTCTCTATCGAACAAGAC
CCTCAAAATGAGCTGAAAGCCCTTCGAAGCGTCTCCTGACGTATTGACAA
AGCGAGGGACGGCGGGCAGGAAGGTGGGAGGGTGGGCAGGAGGGAAGGGG
GGGGAGAGAAGGTGCATGGTTTTGGAGGCAGTGTTACACCCTCCTTGGCC
CTGGCAAGTTTCACTCCACTCTCTCTATCGCTCTTTCTCTCTATTCATTC
AAGCATGGCACTACTTTCTTGTTACTTTCTCAACCATCAATAGCTACATG
ACAAAAACCTTTTCCTCTTCTCTTTTCCCCCTCTTTCTCCTCCTTTCCCT
CCCCCACCTCCTAAAATCCTCCTTCCCTTTGCATAGCCCACATTGCGCGG
GTCGCCCGAATCTTTCCCACACACACAGACACCCTGAATCCTTTCAAAAC
ACAGACGCCCTGAATCCTTTCCTCACACACAGACAGCCTGAATCCTTTCC
TCTCCCTCAAAGGGTGGTACACCCATAACAAAAATGTCGGACTGTATCAA
TCAGGTGTAGGCCAACCCTAGATAAAATGGAGGTACTGGGCACGTCCCAC
CAGCTCCCGCACGCCAAACAATACTCCATCCGCTGTGCATTGCATCACTA
AACAAAACCATCCTATTCACGCTCCTCCCCCTCCCTCCCTCCCTCGTTCT
CTACCTCCGTGGGCTTCTATTGAAGGCCCGCCGCCCATGCCGGCACGGGC
AACAAAGACGGCAAGACCGGCCGTGGAAGCAAACCCGGCGAAAAAATCGG
CACTACACCCCCCCCTATCCCTCCCTGTCTCCCCTCCCCTAGATCC
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Coding sequence (CDS) from alignment at scaffold_4:111152..112497-

>mRNA_1830 ID=mRNA_1830|Name=jgi.p|Nanoce1779_2|578081|organism=Nannochloropsis oceanica|type=CDS|length=363bp|location=Sequence derived from alignment at scaffold_4:111152..112497- (Nannochloropsis oceanica)
ATGGTTTTGGAGGCAGTGTTACACCCTCCTTGGCCCTGGCAAGTTTCACT
CCACTCTCTCTATCGCTCTTTCTCTCTATTCATTCAAGCATGGCACTACT
TTCTTGTTACTTTCTCAACCATCAATAGCTACATGACAAAAACCTTTTCC
TCTTCTCTTTTCCCCCTCTTTCTCCTCCTTTCCCTCCCCCACCTCCTAAA
ATCCTCCTTCCCTTTGCATAGCCCACATTGCGCGGGTCGCCCGAATCTTT
CCCACACACACAGACACCCTGAATCCTTTCAAAACACAGACGCCCTGAAT
CCTTTCCTCACACACAGACAGCCTGAATCCTTTCCTCTCCCTCAAAGGGT
GGTACACCCATAA
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Synonyms
Publications