jgi.p|Nanoce1779_2|576475, mRNA_183 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|576475
Unique NamemRNA_183
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length691
Alignment locationscaffold_3:466199..466889 +

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Properties
Property NameValue
TranscriptId576561
TrackFilteredModels2
ProteinId576475
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:466199..466889 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576475gene_183Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576475mRNA_183-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_183CDS_183Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_183 ID=mRNA_183|Name=jgi.p|Nanoce1779_2|576475|organism=Nannochloropsis oceanica|type=mRNA|length=691bp
CCCATGAATGCCGGTTCGTCAGCTTCTTACCGTTACCCGACCGTGGATGT
GAAAATGGGTTTCTATGCCTGCGATGCTGCTCTCAAAGCCCTGCCTGAAG
ACAAAATCGTGCCCCCCCCGGGAACGAGGCAATCGTCGGTCGAGGCAGGT
GACGACCTTCCCGAGTCAAATCCCGCGGCGGCGAGTGGTTTTGGCTCTAA
GATTATGTGGTCGGACTTAAATACTGCAATAGGCGCGCAGTCGAAATGCT
TGATCACATGTCTCGGCAATCTCAATGAACAAGGGGATGATTGTGCGGCT
GCTGCCTACGTTTTGCATTCGGGTTGCTTGCAGAAATGCCCTGAGGCGGT
CTTACGTTGGACAATTAACGCATGCACCAAGGCTAAATGCCACTCCGACC
AGTGCGCGCTTCAGACTACGTCGGCTGGGCCTTGTCGTAGTAGCGCTGCG
TATCTGTCCTCGGTGATGCTGGGTGCAGTGCTCTATGGCGGGTTGTGGGC
ACTGGGGTAGGCGGGAACGCTTTGAAGGTCTTTCTGAGGGGGATGGAACT
GATGGGAGTAGGGAAAAAGGGGTACAGGCCGCAAGATATCCGGGAAACAA
AAAGGGACCAATTAGAAATCTTGACGGCTCACTTTGCCAGCTTGTCGCAC
GAAGCACGACTTAAACGTAATCGTAGATTGAGCATACGAAA
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protein sequence of jgi.p|Nanoce1779_2|576475

>mRNA_183-protein ID=mRNA_183-protein|Name=jgi.p|Nanoce1779_2|576475|organism=Nannochloropsis oceanica|type=polypeptide|length=169bp
MNAGSSASYRYPTVDVKMGFYACDAALKALPEDKIVPPPGTRQSSVEAGD
DLPESNPAAASGFGSKIMWSDLNTAIGAQSKCLITCLGNLNEQGDDCAAA
AYVLHSGCLQKCPEAVLRWTINACTKAKCHSDQCALQTTSAGPCRSSAAY
LSSVMLGAVLYGGLWALG*
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mRNA from alignment at scaffold_3:466199..466889+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_183 ID=mRNA_183|Name=jgi.p|Nanoce1779_2|576475|organism=Nannochloropsis oceanica|type=mRNA|length=691bp|location=Sequence derived from alignment at scaffold_3:466199..466889+ (Nannochloropsis oceanica)
CCCATGAATGCCGGTTCGTCAGCTTCTTACCGTTACCCGACCGTGGATGT
GAAAATGGGTTTCTATGCCTGCGATGCTGCTCTCAAAGCCCTGCCTGAAG
ACAAAATCGTGCCCCCCCCGGGAACGAGGCAATCGTCGGTCGAGGCAGGT
GACGACCTTCCCGAGTCAAATCCCGCGGCGGCGAGTGGTTTTGGCTCTAA
GATTATGTGGTCGGACTTAAATACTGCAATAGGCGCGCAGTCGAAATGCT
TGATCACATGTCTCGGCAATCTCAATGAACAAGGGGATGATTGTGCGGCT
GCTGCCTACGTTTTGCATTCGGGTTGCTTGCAGAAATGCCCTGAGGCGGT
CTTACGTTGGACAATTAACGCATGCACCAAGGCTAAATGCCACTCCGACC
AGTGCGCGCTTCAGACTACGTCGGCTGGGCCTTGTCGTAGTAGCGCTGCG
TATCTGTCCTCGGTGATGCTGGGTGCAGTGCTCTATGGCGGGTTGTGGGC
ACTGGGGTAGGCGGGAACGCTTTGAAGGTCTTTCTGAGGGGGATGGAACT
GATGGGAGTAGGGAAAAAGGGGTACAGGCCGCAAGATATCCGGGAAACAA
AAAGGGACCAATTAGAAATCTTGACGGCTCACTTTGCCAGCTTGTCGCAC
GAAGCACGACTTAAACGTAATCGTAGATTGAGCATACGAAA
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Coding sequence (CDS) from alignment at scaffold_3:466199..466889+

>mRNA_183 ID=mRNA_183|Name=jgi.p|Nanoce1779_2|576475|organism=Nannochloropsis oceanica|type=CDS|length=507bp|location=Sequence derived from alignment at scaffold_3:466199..466889+ (Nannochloropsis oceanica)
ATGAATGCCGGTTCGTCAGCTTCTTACCGTTACCCGACCGTGGATGTGAA
AATGGGTTTCTATGCCTGCGATGCTGCTCTCAAAGCCCTGCCTGAAGACA
AAATCGTGCCCCCCCCGGGAACGAGGCAATCGTCGGTCGAGGCAGGTGAC
GACCTTCCCGAGTCAAATCCCGCGGCGGCGAGTGGTTTTGGCTCTAAGAT
TATGTGGTCGGACTTAAATACTGCAATAGGCGCGCAGTCGAAATGCTTGA
TCACATGTCTCGGCAATCTCAATGAACAAGGGGATGATTGTGCGGCTGCT
GCCTACGTTTTGCATTCGGGTTGCTTGCAGAAATGCCCTGAGGCGGTCTT
ACGTTGGACAATTAACGCATGCACCAAGGCTAAATGCCACTCCGACCAGT
GCGCGCTTCAGACTACGTCGGCTGGGCCTTGTCGTAGTAGCGCTGCGTAT
CTGTCCTCGGTGATGCTGGGTGCAGTGCTCTATGGCGGGTTGTGGGCACT
GGGGTAG
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Synonyms
Publications