jgi.p|Nanoce1779_2|659598, mRNA_1828 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|659598
Unique NamemRNA_1828
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1877
Alignment locationscaffold_4:106690..108566 -

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Properties
Property NameValue
TranscriptId659684
TrackFilteredModels2
ProteinId659598
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:106690..108566 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|659598gene_1828Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|659598mRNA_1828-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1828CDS_1828Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1828 ID=mRNA_1828|Name=jgi.p|Nanoce1779_2|659598|organism=Nannochloropsis oceanica|type=mRNA|length=1877bp
ATGACAGAACAAAAAGATAGCATTGCCGGTGATCCGCAGCCGGAAACGGA
AGTTCCTCCCCGAGTCGAGGGTGCCTGGTCTTCCTCGCTGGCACCTAGCG
GCCATTCTGAAAGAGGTTGTGGTCAAGGCAGAGGTTGTAGGGAGGAGGGA
AAAGGCGAAAAAATTGATGAGGAAGATCAGAACCGCTTATGCTGTTCCTG
TCGGCTGACTGATAGACTTGGCGAAGTTATGGATGATGACGACGACATAT
ACCTCTGCCTCAAAAATCACTTCGTAGGCTTCGTAGCGTGTGTGCTGGCT
TGGTACTGCTTCGGTTTGTCTTTTTTCATCGCCCCTATAGGGCTTACTTC
CCATGTTCCCATGCCGGACCAAGCACGCAACGCCAATTACTTGACGCCCG
CTGCCTTTTACTTGCTTTTTGCGGGTCGCTTCATAGGAGGGATGATTTTC
GGACAATTTGGAGACCGCTATAGGCGTCAGGTGGTTTTGGCTTTGTGTTT
GCTCTTGATCGGTCTCACCACGTTGGCCATGGGCCTGTACCCTTTTCATG
AGCCGGGTGTCGACAGGCTTTCGGTGGGCTGGGCAGCACTTCGGTTCTTG
CAAGGCGTCGGCGTAGGGGGTCAGTGGCCTGGCACAATCTTGCTCGCCCT
AGAGTCGTGTCACAACGAGAGGCATGGGGCATTAGCGGCGGGAATTTCTC
ATTCGGGTGTCTTTCTGGGCCTGGGACTGGCAGCCGGTGCTGCGTATCAA
TTGATGGGGCAAGATGGCGGGGGAAATCCAATGCGTAAAGCGTTCTGGAT
CGCAGGTGGATTGGTTATGCCGGTGGCCGTGTGGGTGTACTTTGGAGACA
GCGCGGTGGCAACGTTCGAAGATGTACAGGAGGGGGGAGGGATCTCAAGG
TACTCTTGGTGGGCGATGGTGAAGCACAATTTTTGGACCTTCATTTTTGG
ATGGATAACGCTTTCAATCGATGCCCTGGCCCAATCAATTTTGATATTCC
AGTGGCCCCTCATTTTGCCTCATGGCAGTGGCCCAGGGCCCCATGGTCGT
CAGTCACTCACTAATAGTCCAGCGGCAGCGGCCAAAGATGTGCATGGGTG
CGTTGCCATGGGTTTGCTCGCGACTGCCGTCATGACTATCGTAAGCGCCT
TTTTGCGAGAGCGCTCCTTCTCCCGCTGCCTTTTGTACCGTCTGGGTGCT
TTCCTCACGTGCTTGGGGTTGTGGATTTGGTTTTTCTTGGCAGCTGGAAC
TGTGCGACGCCACAAGCCCCTCGCCTGGCTATTTGGAGGGTACCTCCTCG
TACTTGGCCCGGGCCTGGGCACGATGCAAGGACCCTTGGCTGCGCTGGTA
GCTGAGCCCTTCCCCTCTTCCATCGCATACGCAGGTTTAGGTTTCGCCTA
TCATACCGTCCACTCTGCCATGGGTGCCGCTTTTCCTTCCTTGACCAACT
GGCTTTTGGTCCGAGGCTCGTCGGAGACCGTAATAATATTAAGTGCTGAC
ATCCGTCCTATCTATCTCGCGGTAGCCGTTTTGATTGTAACGGTCCTCTG
CATGTACACGACATCTTTCCTCAAGGGCAGTCAACGACGCTCTATCTTGT
CACGCACTCAAGGCTTGCGTGTCCGAGATTGTATTGGTTTGTCCACAAAC
CCCTCCTCTTCCGTCTTTCGATCGACTGCGTCCGGCCATCACTCAATGCC
CCTTCCCACGATGCAGCAGTCAGTATCACTTCCCACGATGCAACAGCTAG
GACCGCTTCAAACGATACAGCAGATAGGTAATGGATTACCGCGCCTGGAG
GAAGACACAAAGCAGTAAAAATTTAGATTCGATTGCATTTAAAAGGGGGC
CACAGGTATTTGTGTAATCTATATTGC
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protein sequence of jgi.p|Nanoce1779_2|659598

>mRNA_1828-protein ID=mRNA_1828-protein|Name=jgi.p|Nanoce1779_2|659598|organism=Nannochloropsis oceanica|type=polypeptide|length=606bp
MTEQKDSIAGDPQPETEVPPRVEGAWSSSLAPSGHSERGCGQGRGCREEG
KGEKIDEEDQNRLCCSCRLTDRLGEVMDDDDDIYLCLKNHFVGFVACVLA
WYCFGLSFFIAPIGLTSHVPMPDQARNANYLTPAAFYLLFAGRFIGGMIF
GQFGDRYRRQVVLALCLLLIGLTTLAMGLYPFHEPGVDRLSVGWAALRFL
QGVGVGGQWPGTILLALESCHNERHGALAAGISHSGVFLGLGLAAGAAYQ
LMGQDGGGNPMRKAFWIAGGLVMPVAVWVYFGDSAVATFEDVQEGGGISR
YSWWAMVKHNFWTFIFGWITLSIDALAQSILIFQWPLILPHGSGPGPHGR
QSLTNSPAAAAKDVHGCVAMGLLATAVMTIVSAFLRERSFSRCLLYRLGA
FLTCLGLWIWFFLAAGTVRRHKPLAWLFGGYLLVLGPGLGTMQGPLAALV
AEPFPSSIAYAGLGFAYHTVHSAMGAAFPSLTNWLLVRGSSETVIILSAD
IRPIYLAVAVLIVTVLCMYTTSFLKGSQRRSILSRTQGLRVRDCIGLSTN
PSSSVFRSTASGHHSMPLPTMQQSVSLPTMQQLGPLQTIQQIGNGLPRLE
EDTKQ*
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mRNA from alignment at scaffold_4:106690..108566-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1828 ID=mRNA_1828|Name=jgi.p|Nanoce1779_2|659598|organism=Nannochloropsis oceanica|type=mRNA|length=1877bp|location=Sequence derived from alignment at scaffold_4:106690..108566- (Nannochloropsis oceanica)
ATGACAGAACAAAAAGATAGCATTGCCGGTGATCCGCAGCCGGAAACGGA
AGTTCCTCCCCGAGTCGAGGGTGCCTGGTCTTCCTCGCTGGCACCTAGCG
GCCATTCTGAAAGAGGTTGTGGTCAAGGCAGAGGTTGTAGGGAGGAGGGA
AAAGGCGAAAAAATTGATGAGGAAGATCAGAACCGCTTATGCTGTTCCTG
TCGGCTGACTGATAGACTTGGCGAAGTTATGGATGATGACGACGACATAT
ACCTCTGCCTCAAAAATCACTTCGTAGGCTTCGTAGCGTGTGTGCTGGCT
TGGTACTGCTTCGGTTTGTCTTTTTTCATCGCCCCTATAGGGCTTACTTC
CCATGTTCCCATGCCGGACCAAGCACGCAACGCCAATTACTTGACGCCCG
CTGCCTTTTACTTGCTTTTTGCGGGTCGCTTCATAGGAGGGATGATTTTC
GGACAATTTGGAGACCGCTATAGGCGTCAGGTGGTTTTGGCTTTGTGTTT
GCTCTTGATCGGTCTCACCACGTTGGCCATGGGCCTGTACCCTTTTCATG
AGCCGGGTGTCGACAGGCTTTCGGTGGGCTGGGCAGCACTTCGGTTCTTG
CAAGGCGTCGGCGTAGGGGGTCAGTGGCCTGGCACAATCTTGCTCGCCCT
AGAGTCGTGTCACAACGAGAGGCATGGGGCATTAGCGGCGGGAATTTCTC
ATTCGGGTGTCTTTCTGGGCCTGGGACTGGCAGCCGGTGCTGCGTATCAA
TTGATGGGGCAAGATGGCGGGGGAAATCCAATGCGTAAAGCGTTCTGGAT
CGCAGGTGGATTGGTTATGCCGGTGGCCGTGTGGGTGTACTTTGGAGACA
GCGCGGTGGCAACGTTCGAAGATGTACAGGAGGGGGGAGGGATCTCAAGG
TACTCTTGGTGGGCGATGGTGAAGCACAATTTTTGGACCTTCATTTTTGG
ATGGATAACGCTTTCAATCGATGCCCTGGCCCAATCAATTTTGATATTCC
AGTGGCCCCTCATTTTGCCTCATGGCAGTGGCCCAGGGCCCCATGGTCGT
CAGTCACTCACTAATAGTCCAGCGGCAGCGGCCAAAGATGTGCATGGGTG
CGTTGCCATGGGTTTGCTCGCGACTGCCGTCATGACTATCGTAAGCGCCT
TTTTGCGAGAGCGCTCCTTCTCCCGCTGCCTTTTGTACCGTCTGGGTGCT
TTCCTCACGTGCTTGGGGTTGTGGATTTGGTTTTTCTTGGCAGCTGGAAC
TGTGCGACGCCACAAGCCCCTCGCCTGGCTATTTGGAGGGTACCTCCTCG
TACTTGGCCCGGGCCTGGGCACGATGCAAGGACCCTTGGCTGCGCTGGTA
GCTGAGCCCTTCCCCTCTTCCATCGCATACGCAGGTTTAGGTTTCGCCTA
TCATACCGTCCACTCTGCCATGGGTGCCGCTTTTCCTTCCTTGACCAACT
GGCTTTTGGTCCGAGGCTCGTCGGAGACCGTAATAATATTAAGTGCTGAC
ATCCGTCCTATCTATCTCGCGGTAGCCGTTTTGATTGTAACGGTCCTCTG
CATGTACACGACATCTTTCCTCAAGGGCAGTCAACGACGCTCTATCTTGT
CACGCACTCAAGGCTTGCGTGTCCGAGATTGTATTGGTTTGTCCACAAAC
CCCTCCTCTTCCGTCTTTCGATCGACTGCGTCCGGCCATCACTCAATGCC
CCTTCCCACGATGCAGCAGTCAGTATCACTTCCCACGATGCAACAGCTAG
GACCGCTTCAAACGATACAGCAGATAGGTAATGGATTACCGCGCCTGGAG
GAAGACACAAAGCAGTAAAAATTTAGATTCGATTGCATTTAAAAGGGGGC
CACAGGTATTTGTGTAATCTATATTGC
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Coding sequence (CDS) from alignment at scaffold_4:106690..108566-

>mRNA_1828 ID=mRNA_1828|Name=jgi.p|Nanoce1779_2|659598|organism=Nannochloropsis oceanica|type=CDS|length=1818bp|location=Sequence derived from alignment at scaffold_4:106690..108566- (Nannochloropsis oceanica)
ATGACAGAACAAAAAGATAGCATTGCCGGTGATCCGCAGCCGGAAACGGA
AGTTCCTCCCCGAGTCGAGGGTGCCTGGTCTTCCTCGCTGGCACCTAGCG
GCCATTCTGAAAGAGGTTGTGGTCAAGGCAGAGGTTGTAGGGAGGAGGGA
AAAGGCGAAAAAATTGATGAGGAAGATCAGAACCGCTTATGCTGTTCCTG
TCGGCTGACTGATAGACTTGGCGAAGTTATGGATGATGACGACGACATAT
ACCTCTGCCTCAAAAATCACTTCGTAGGCTTCGTAGCGTGTGTGCTGGCT
TGGTACTGCTTCGGTTTGTCTTTTTTCATCGCCCCTATAGGGCTTACTTC
CCATGTTCCCATGCCGGACCAAGCACGCAACGCCAATTACTTGACGCCCG
CTGCCTTTTACTTGCTTTTTGCGGGTCGCTTCATAGGAGGGATGATTTTC
GGACAATTTGGAGACCGCTATAGGCGTCAGGTGGTTTTGGCTTTGTGTTT
GCTCTTGATCGGTCTCACCACGTTGGCCATGGGCCTGTACCCTTTTCATG
AGCCGGGTGTCGACAGGCTTTCGGTGGGCTGGGCAGCACTTCGGTTCTTG
CAAGGCGTCGGCGTAGGGGGTCAGTGGCCTGGCACAATCTTGCTCGCCCT
AGAGTCGTGTCACAACGAGAGGCATGGGGCATTAGCGGCGGGAATTTCTC
ATTCGGGTGTCTTTCTGGGCCTGGGACTGGCAGCCGGTGCTGCGTATCAA
TTGATGGGGCAAGATGGCGGGGGAAATCCAATGCGTAAAGCGTTCTGGAT
CGCAGGTGGATTGGTTATGCCGGTGGCCGTGTGGGTGTACTTTGGAGACA
GCGCGGTGGCAACGTTCGAAGATGTACAGGAGGGGGGAGGGATCTCAAGG
TACTCTTGGTGGGCGATGGTGAAGCACAATTTTTGGACCTTCATTTTTGG
ATGGATAACGCTTTCAATCGATGCCCTGGCCCAATCAATTTTGATATTCC
AGTGGCCCCTCATTTTGCCTCATGGCAGTGGCCCAGGGCCCCATGGTCGT
CAGTCACTCACTAATAGTCCAGCGGCAGCGGCCAAAGATGTGCATGGGTG
CGTTGCCATGGGTTTGCTCGCGACTGCCGTCATGACTATCGTAAGCGCCT
TTTTGCGAGAGCGCTCCTTCTCCCGCTGCCTTTTGTACCGTCTGGGTGCT
TTCCTCACGTGCTTGGGGTTGTGGATTTGGTTTTTCTTGGCAGCTGGAAC
TGTGCGACGCCACAAGCCCCTCGCCTGGCTATTTGGAGGGTACCTCCTCG
TACTTGGCCCGGGCCTGGGCACGATGCAAGGACCCTTGGCTGCGCTGGTA
GCTGAGCCCTTCCCCTCTTCCATCGCATACGCAGGTTTAGGTTTCGCCTA
TCATACCGTCCACTCTGCCATGGGTGCCGCTTTTCCTTCCTTGACCAACT
GGCTTTTGGTCCGAGGCTCGTCGGAGACCGTAATAATATTAAGTGCTGAC
ATCCGTCCTATCTATCTCGCGGTAGCCGTTTTGATTGTAACGGTCCTCTG
CATGTACACGACATCTTTCCTCAAGGGCAGTCAACGACGCTCTATCTTGT
CACGCACTCAAGGCTTGCGTGTCCGAGATTGTATTGGTTTGTCCACAAAC
CCCTCCTCTTCCGTCTTTCGATCGACTGCGTCCGGCCATCACTCAATGCC
CCTTCCCACGATGCAGCAGTCAGTATCACTTCCCACGATGCAACAGCTAG
GACCGCTTCAAACGATACAGCAGATAGGTAATGGATTACCGCGCCTGGAG
GAAGACACAAAGCAGTAA
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Synonyms
Publications