jgi.p|Nanoce1779_2|578076, mRNA_1827 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578076
Unique NamemRNA_1827
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1203
Alignment locationscaffold_4:105182..106384 +

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Properties
Property NameValue
TranscriptId578162
TrackFilteredModels2
ProteinId578076
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:105182..106384 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578076gene_1827Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578076mRNA_1827-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1827CDS_1827Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1827 ID=mRNA_1827|Name=jgi.p|Nanoce1779_2|578076|organism=Nannochloropsis oceanica|type=mRNA|length=1203bp
GAAAAGCGAAAGGGGATGGCACTGTCCTGCTTATACAGGGCTTTCGACCT
TGCCCGTTTTTGTGCCTTGAAAATCACGCCATTCCTGGCATTCACATCCA
CACCCATACAGGCACAAGTTTGACATGCCGTTGGCTCTGTTGCAGCTTTG
GGCCCTTGTTATTGTCTGCCTCACAAGACACGTGTCTGGATTTCTGTTGA
CCTCCCCGTCTCCGACTGCAACAATCTCAAGTATGACTGCCGCTACGACC
TTGTCGCCGCAGGCTGATAGCGCTTCGCCCGCTTCGACTACCGCTACAAC
TACTTCGAAGACAGCGTATATCGACGTCATCATATGTCGACACGGAGAGA
CCTGCCACAATGCGGAAGGACGCTGCCAGGGCATGGAGGACGTCTCGCGA
TTGACAGCGCAAGGTGAGGCGCAAGCGCTGGAATTGGGCCGGGCCCTGGC
GGAACGAGGACAGCGTTTCGACCGAATCTTCATCTCGCCTCTTGCCCGTG
CCCGGCACACATTTGATCACATGGAGAAGCAATGGCGGGCGCTTGGCTTC
AGAGCCTATCCCAGATGCGCGCCGACCTTTGTGCCCGAGATCCAAGAGAT
TTGTCTGTACGACTGGCAAGGGCAGTTGCGCAAGGACCTGCAAGTGCTTT
ACCCGGACGAGTTTGAGAATTGGATGAATCAGCCTGCAACGTTCTGTATC
GGGCAGCACTATCCAGTTCGCGAGCTGTGGACGCGGGCCAAGCGGGGATG
GGAGGTGATCTTGTCGCAGTCCAAACCGTTCGAGAGAGTGCTGGTCGTGG
CACACAGCGGTATCAATCAAGCACTGTGCTTTGCGGCTTTAGGTCACCAG
GAGCCGATGTATAGACGCTTAAATTTCCCGAACTGTGGTGCCTTGCATCT
GCGCTTGGCCTTGCCCACGTCGCCCACAGAGACAGCGGAAATGGTGCAGG
CGGGAGGGTACACCTTGCCCGTGCCTGTAGTGGATGCAGAAGAAGTTGAT
GATAGCGACACATCTATGGCCCAGTATTATCGACGAGTCCATCCATTTGA
ATGGGAGCCAGAGGTGCACTCTCGGCTAGTTGTGGGTGCCGTCATTAGTA
GGGAAGGCGCCAAGGGATGATCTCCTTAACGAGACGATACTGTACGAATT
TTGTCTACATTTGTTAGCGTGTTTTGTAAATCAATAAATTATATACAGTC
ATA
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protein sequence of jgi.p|Nanoce1779_2|578076

>mRNA_1827-protein ID=mRNA_1827-protein|Name=jgi.p|Nanoce1779_2|578076|organism=Nannochloropsis oceanica|type=polypeptide|length=332bp
MPLALLQLWALVIVCLTRHVSGFLLTSPSPTATISSMTAATTLSPQADSA
SPASTTATTTSKTAYIDVIICRHGETCHNAEGRCQGMEDVSRLTAQGEAQ
ALELGRALAERGQRFDRIFISPLARARHTFDHMEKQWRALGFRAYPRCAP
TFVPEIQEICLYDWQGQLRKDLQVLYPDEFENWMNQPATFCIGQHYPVRE
LWTRAKRGWEVILSQSKPFERVLVVAHSGINQALCFAALGHQEPMYRRLN
FPNCGALHLRLALPTSPTETAEMVQAGGYTLPVPVVDAEEVDDSDTSMAQ
YYRRVHPFEWEPEVHSRLVVGAVISREGAKG*
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mRNA from alignment at scaffold_4:105182..106384+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1827 ID=mRNA_1827|Name=jgi.p|Nanoce1779_2|578076|organism=Nannochloropsis oceanica|type=mRNA|length=1203bp|location=Sequence derived from alignment at scaffold_4:105182..106384+ (Nannochloropsis oceanica)
GAAAAGCGAAAGGGGATGGCACTGTCCTGCTTATACAGGGCTTTCGACCT
TGCCCGTTTTTGTGCCTTGAAAATCACGCCATTCCTGGCATTCACATCCA
CACCCATACAGGCACAAGTTTGACATGCCGTTGGCTCTGTTGCAGCTTTG
GGCCCTTGTTATTGTCTGCCTCACAAGACACGTGTCTGGATTTCTGTTGA
CCTCCCCGTCTCCGACTGCAACAATCTCAAGTATGACTGCCGCTACGACC
TTGTCGCCGCAGGCTGATAGCGCTTCGCCCGCTTCGACTACCGCTACAAC
TACTTCGAAGACAGCGTATATCGACGTCATCATATGTCGACACGGAGAGA
CCTGCCACAATGCGGAAGGACGCTGCCAGGGCATGGAGGACGTCTCGCGA
TTGACAGCGCAAGGTGAGGCGCAAGCGCTGGAATTGGGCCGGGCCCTGGC
GGAACGAGGACAGCGTTTCGACCGAATCTTCATCTCGCCTCTTGCCCGTG
CCCGGCACACATTTGATCACATGGAGAAGCAATGGCGGGCGCTTGGCTTC
AGAGCCTATCCCAGATGCGCGCCGACCTTTGTGCCCGAGATCCAAGAGAT
TTGTCTGTACGACTGGCAAGGGCAGTTGCGCAAGGACCTGCAAGTGCTTT
ACCCGGACGAGTTTGAGAATTGGATGAATCAGCCTGCAACGTTCTGTATC
GGGCAGCACTATCCAGTTCGCGAGCTGTGGACGCGGGCCAAGCGGGGATG
GGAGGTGATCTTGTCGCAGTCCAAACCGTTCGAGAGAGTGCTGGTCGTGG
CACACAGCGGTATCAATCAAGCACTGTGCTTTGCGGCTTTAGGTCACCAG
GAGCCGATGTATAGACGCTTAAATTTCCCGAACTGTGGTGCCTTGCATCT
GCGCTTGGCCTTGCCCACGTCGCCCACAGAGACAGCGGAAATGGTGCAGG
CGGGAGGGTACACCTTGCCCGTGCCTGTAGTGGATGCAGAAGAAGTTGAT
GATAGCGACACATCTATGGCCCAGTATTATCGACGAGTCCATCCATTTGA
ATGGGAGCCAGAGGTGCACTCTCGGCTAGTTGTGGGTGCCGTCATTAGTA
GGGAAGGCGCCAAGGGATGATCTCCTTAACGAGACGATACTGTACGAATT
TTGTCTACATTTGTTAGCGTGTTTTGTAAATCAATAAATTATATACAGTC
ATA
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Coding sequence (CDS) from alignment at scaffold_4:105182..106384+

>mRNA_1827 ID=mRNA_1827|Name=jgi.p|Nanoce1779_2|578076|organism=Nannochloropsis oceanica|type=CDS|length=996bp|location=Sequence derived from alignment at scaffold_4:105182..106384+ (Nannochloropsis oceanica)
ATGCCGTTGGCTCTGTTGCAGCTTTGGGCCCTTGTTATTGTCTGCCTCAC
AAGACACGTGTCTGGATTTCTGTTGACCTCCCCGTCTCCGACTGCAACAA
TCTCAAGTATGACTGCCGCTACGACCTTGTCGCCGCAGGCTGATAGCGCT
TCGCCCGCTTCGACTACCGCTACAACTACTTCGAAGACAGCGTATATCGA
CGTCATCATATGTCGACACGGAGAGACCTGCCACAATGCGGAAGGACGCT
GCCAGGGCATGGAGGACGTCTCGCGATTGACAGCGCAAGGTGAGGCGCAA
GCGCTGGAATTGGGCCGGGCCCTGGCGGAACGAGGACAGCGTTTCGACCG
AATCTTCATCTCGCCTCTTGCCCGTGCCCGGCACACATTTGATCACATGG
AGAAGCAATGGCGGGCGCTTGGCTTCAGAGCCTATCCCAGATGCGCGCCG
ACCTTTGTGCCCGAGATCCAAGAGATTTGTCTGTACGACTGGCAAGGGCA
GTTGCGCAAGGACCTGCAAGTGCTTTACCCGGACGAGTTTGAGAATTGGA
TGAATCAGCCTGCAACGTTCTGTATCGGGCAGCACTATCCAGTTCGCGAG
CTGTGGACGCGGGCCAAGCGGGGATGGGAGGTGATCTTGTCGCAGTCCAA
ACCGTTCGAGAGAGTGCTGGTCGTGGCACACAGCGGTATCAATCAAGCAC
TGTGCTTTGCGGCTTTAGGTCACCAGGAGCCGATGTATAGACGCTTAAAT
TTCCCGAACTGTGGTGCCTTGCATCTGCGCTTGGCCTTGCCCACGTCGCC
CACAGAGACAGCGGAAATGGTGCAGGCGGGAGGGTACACCTTGCCCGTGC
CTGTAGTGGATGCAGAAGAAGTTGATGATAGCGACACATCTATGGCCCAG
TATTATCGACGAGTCCATCCATTTGAATGGGAGCCAGAGGTGCACTCTCG
GCTAGTTGTGGGTGCCGTCATTAGTAGGGAAGGCGCCAAGGGATGA
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Synonyms
Publications