jgi.p|Nanoce1779_2|578075, mRNA_1826 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578075
Unique NamemRNA_1826
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1419
Alignment locationscaffold_4:103788..105206 -

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Properties
Property NameValue
TranscriptId578161
TrackFilteredModels2
ProteinId578075
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:103788..105206 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578075gene_1826Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578075mRNA_1826-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1826CDS_1826Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1826 ID=mRNA_1826|Name=jgi.p|Nanoce1779_2|578075|organism=Nannochloropsis oceanica|type=mRNA|length=1419bp
ACAGTGCCATCCCCTTTCGCTTTTCCCTCCTTCTTTCTTCAACTCATGCG
GATGAGACACCTTCGTACATCTCACACACAACACAACTTCTTAACTCGTC
CTCAAGCTTCCCCCCTTGACAGTTAAGATGCTCGCCCCGCATGAACCCAG
GGCCCCCGCCACCTCTCCCTCTCCCACGGTCCAGGACGGGGCCAAGACGG
CCGTGCTGCTGGCCTCCACGCCGTTGCCAGAGGCCACGCCCACCGTGCGC
GGGTTTGACTGGAATGCCGCTTTGGCATCATCCGAGGGCGTTTCCCTTCA
TGGCTTGCTGGGCTCCTTCCTGACGACGGGCTTCCAGGCCACCAACCTTG
GCATGGCCATCAAAGAGATAGAGCGGATGCGGGCGTGGCGGCTGAGCGAC
GTACCCGTGGCTCCAGATGAAGACGACGACTTGATAGACCCCGCCGTGCG
TGCCACCATCAAATGCAAGATATTTTTGGCCTACACCTCCAATCTAATTT
CCTCGGGCCTGAGAGAAACGCTGCGCTTCATTGTGGAACACAAGCTGGTG
GACGTGGTGGTGACGACGGCAGGTGGGGTGGAAGAGGACCTGATCAAGTG
CTTGGCACCCACCCGCCTGGGAGATTTTTCCTTGCCGGGGATCGAGCTTC
GGAAACGGGGTATTAATCGCATTGGCAATTTATTGGTGCCGAATGACAAT
TATTGCAAGTTCGAGGACTGGGTCACGCCTATCCTCCATGCCATGGCGGC
CGAGCAAAACACCGAGGGCCGACGGTGGACACCCTCCCGACTGATTGAGC
GGTTAGGCAAAGAGATAAACAACCCGGACTCCATCTATTATTGGGCAGCG
AAGAATCAGATCCCAGTGTTTTGCCCCGCTTTGACCGATGGCTCCCTGGG
GGATATGTTGTATTTCTTCTCGTACAAGCACCCGGAATTTGTGGTGGACA
TGGTTGCAGACATCAGGAGGTTGAACGACGAAGCCGTGCATGCCAAGGCC
ACAGGCATGATTATCTTGGGAGGGGGCTTGGTGAAACATCACACGTGCAA
TGCGAATCTCATGAGGAATGGGGCGGATTTCGCGGTTTTTGTGAACACAG
GGCAAGAGTTTGATGGGAGTGACTCAGGGGCTCGGCCGGACGAGGCTGTG
TCATGGGGGAAAGTGAAGATGGATGCGCACCCCGTGAAAGTTTTTGGTGA
TGCCACGCTGGTTTTTCCGTTGTTGGTGGCCGAGACGTTCGCGAAGGAAG
TGGCTGCGGAGAGGGGGCGTGAAGGAGGAGGAGGAGGGAAGGTGGAGGAA
GAGTCGGCGGCGCTGAAGAGGCAACGAGTAGTCTTGTAAGGAAGAGGGAA
AGGGGGAAAGGATTTTTGAACTACCAAAGTAGACAGGTAGCAGCAATCAC
AAAGCACGATGTGTATATA
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protein sequence of jgi.p|Nanoce1779_2|578075

>mRNA_1826-protein ID=mRNA_1826-protein|Name=jgi.p|Nanoce1779_2|578075|organism=Nannochloropsis oceanica|type=polypeptide|length=404bp
MLAPHEPRAPATSPSPTVQDGAKTAVLLASTPLPEATPTVRGFDWNAALA
SSEGVSLHGLLGSFLTTGFQATNLGMAIKEIERMRAWRLSDVPVAPDEDD
DLIDPAVRATIKCKIFLAYTSNLISSGLRETLRFIVEHKLVDVVVTTAGG
VEEDLIKCLAPTRLGDFSLPGIELRKRGINRIGNLLVPNDNYCKFEDWVT
PILHAMAAEQNTEGRRWTPSRLIERLGKEINNPDSIYYWAAKNQIPVFCP
ALTDGSLGDMLYFFSYKHPEFVVDMVADIRRLNDEAVHAKATGMIILGGG
LVKHHTCNANLMRNGADFAVFVNTGQEFDGSDSGARPDEAVSWGKVKMDA
HPVKVFGDATLVFPLLVAETFAKEVAAERGREGGGGGKVEEESAALKRQR
VVL*
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mRNA from alignment at scaffold_4:103788..105206-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1826 ID=mRNA_1826|Name=jgi.p|Nanoce1779_2|578075|organism=Nannochloropsis oceanica|type=mRNA|length=1419bp|location=Sequence derived from alignment at scaffold_4:103788..105206- (Nannochloropsis oceanica)
ACAGTGCCATCCCCTTTCGCTTTTCCCTCCTTCTTTCTTCAACTCATGCG
GATGAGACACCTTCGTACATCTCACACACAACACAACTTCTTAACTCGTC
CTCAAGCTTCCCCCCTTGACAGTTAAGATGCTCGCCCCGCATGAACCCAG
GGCCCCCGCCACCTCTCCCTCTCCCACGGTCCAGGACGGGGCCAAGACGG
CCGTGCTGCTGGCCTCCACGCCGTTGCCAGAGGCCACGCCCACCGTGCGC
GGGTTTGACTGGAATGCCGCTTTGGCATCATCCGAGGGCGTTTCCCTTCA
TGGCTTGCTGGGCTCCTTCCTGACGACGGGCTTCCAGGCCACCAACCTTG
GCATGGCCATCAAAGAGATAGAGCGGATGCGGGCGTGGCGGCTGAGCGAC
GTACCCGTGGCTCCAGATGAAGACGACGACTTGATAGACCCCGCCGTGCG
TGCCACCATCAAATGCAAGATATTTTTGGCCTACACCTCCAATCTAATTT
CCTCGGGCCTGAGAGAAACGCTGCGCTTCATTGTGGAACACAAGCTGGTG
GACGTGGTGGTGACGACGGCAGGTGGGGTGGAAGAGGACCTGATCAAGTG
CTTGGCACCCACCCGCCTGGGAGATTTTTCCTTGCCGGGGATCGAGCTTC
GGAAACGGGGTATTAATCGCATTGGCAATTTATTGGTGCCGAATGACAAT
TATTGCAAGTTCGAGGACTGGGTCACGCCTATCCTCCATGCCATGGCGGC
CGAGCAAAACACCGAGGGCCGACGGTGGACACCCTCCCGACTGATTGAGC
GGTTAGGCAAAGAGATAAACAACCCGGACTCCATCTATTATTGGGCAGCG
AAGAATCAGATCCCAGTGTTTTGCCCCGCTTTGACCGATGGCTCCCTGGG
GGATATGTTGTATTTCTTCTCGTACAAGCACCCGGAATTTGTGGTGGACA
TGGTTGCAGACATCAGGAGGTTGAACGACGAAGCCGTGCATGCCAAGGCC
ACAGGCATGATTATCTTGGGAGGGGGCTTGGTGAAACATCACACGTGCAA
TGCGAATCTCATGAGGAATGGGGCGGATTTCGCGGTTTTTGTGAACACAG
GGCAAGAGTTTGATGGGAGTGACTCAGGGGCTCGGCCGGACGAGGCTGTG
TCATGGGGGAAAGTGAAGATGGATGCGCACCCCGTGAAAGTTTTTGGTGA
TGCCACGCTGGTTTTTCCGTTGTTGGTGGCCGAGACGTTCGCGAAGGAAG
TGGCTGCGGAGAGGGGGCGTGAAGGAGGAGGAGGAGGGAAGGTGGAGGAA
GAGTCGGCGGCGCTGAAGAGGCAACGAGTAGTCTTGTAAGGAAGAGGGAA
AGGGGGAAAGGATTTTTGAACTACCAAAGTAGACAGGTAGCAGCAATCAC
AAAGCACGATGTGTATATA
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Coding sequence (CDS) from alignment at scaffold_4:103788..105206-

>mRNA_1826 ID=mRNA_1826|Name=jgi.p|Nanoce1779_2|578075|organism=Nannochloropsis oceanica|type=CDS|length=1212bp|location=Sequence derived from alignment at scaffold_4:103788..105206- (Nannochloropsis oceanica)
ATGCTCGCCCCGCATGAACCCAGGGCCCCCGCCACCTCTCCCTCTCCCAC
GGTCCAGGACGGGGCCAAGACGGCCGTGCTGCTGGCCTCCACGCCGTTGC
CAGAGGCCACGCCCACCGTGCGCGGGTTTGACTGGAATGCCGCTTTGGCA
TCATCCGAGGGCGTTTCCCTTCATGGCTTGCTGGGCTCCTTCCTGACGAC
GGGCTTCCAGGCCACCAACCTTGGCATGGCCATCAAAGAGATAGAGCGGA
TGCGGGCGTGGCGGCTGAGCGACGTACCCGTGGCTCCAGATGAAGACGAC
GACTTGATAGACCCCGCCGTGCGTGCCACCATCAAATGCAAGATATTTTT
GGCCTACACCTCCAATCTAATTTCCTCGGGCCTGAGAGAAACGCTGCGCT
TCATTGTGGAACACAAGCTGGTGGACGTGGTGGTGACGACGGCAGGTGGG
GTGGAAGAGGACCTGATCAAGTGCTTGGCACCCACCCGCCTGGGAGATTT
TTCCTTGCCGGGGATCGAGCTTCGGAAACGGGGTATTAATCGCATTGGCA
ATTTATTGGTGCCGAATGACAATTATTGCAAGTTCGAGGACTGGGTCACG
CCTATCCTCCATGCCATGGCGGCCGAGCAAAACACCGAGGGCCGACGGTG
GACACCCTCCCGACTGATTGAGCGGTTAGGCAAAGAGATAAACAACCCGG
ACTCCATCTATTATTGGGCAGCGAAGAATCAGATCCCAGTGTTTTGCCCC
GCTTTGACCGATGGCTCCCTGGGGGATATGTTGTATTTCTTCTCGTACAA
GCACCCGGAATTTGTGGTGGACATGGTTGCAGACATCAGGAGGTTGAACG
ACGAAGCCGTGCATGCCAAGGCCACAGGCATGATTATCTTGGGAGGGGGC
TTGGTGAAACATCACACGTGCAATGCGAATCTCATGAGGAATGGGGCGGA
TTTCGCGGTTTTTGTGAACACAGGGCAAGAGTTTGATGGGAGTGACTCAG
GGGCTCGGCCGGACGAGGCTGTGTCATGGGGGAAAGTGAAGATGGATGCG
CACCCCGTGAAAGTTTTTGGTGATGCCACGCTGGTTTTTCCGTTGTTGGT
GGCCGAGACGTTCGCGAAGGAAGTGGCTGCGGAGAGGGGGCGTGAAGGAG
GAGGAGGAGGGAAGGTGGAGGAAGAGTCGGCGGCGCTGAAGAGGCAACGA
GTAGTCTTGTAA
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Synonyms
Publications