jgi.p|Nanoce1779_2|578073, mRNA_1825 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|578073
Unique Name	mRNA_1825
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1416
Alignment location	scaffold_4:102360..103775 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	578159
Track	FilteredModels2
ProteinId	578073

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:102360..103775 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578073	gene_1825	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578073	mRNA_1825-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1825	CDS_1825	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:102360..103775+
coding sequence from alignment at scaffold_4:102360..103775+

mRNA sequence

>mRNA_1825 ID=mRNA_1825|Name=jgi.p|Nanoce1779_2|578073|organism=Nannochloropsis oceanica|type=mRNA|length=1416bp
ACAGAACGCGCTTGCTGTTACCGCCGTTCTCCACCTGCTTGTTTGCTGAG
TGATTGCACACGTACGACCGACGGCCAAGGAGAGCTCAACTACAACTTAC
CCATGAGGAGAAGACATCCGCTCCATCCCACGATGCATCTGATACTGCTC
CTGCTGGCACTCCTTTTGGCTTTCTTCACCGGTACAAGCCGCAGCATGTC
GGCTGACAGCATCATGGTGAGGACTAAAACTGCATTTATGTCTGCCCCTA
CTCCGCCCGCAGGACACGAAAGAAGAAGACCGCCGTTCACGCCAAAGTAC
CCTAGTAGCCGCCGGCACGCAGGCGGCAGCACTAATGACGATGGCGGTGG
GTACAAGGCCAAGAAGGAGAGGCAACAAAAGGAAAAGGACAAGCTCTCAG
CCCTGATGGCCAAGCAAGAACGAGAAGCCGTCAAGAAATACATGGAAAAA
GAGGCGAAAAAAGACCTCGAATCCCAAGCCAAAATCCGCCAAGCCCAAGC
CTACATGGCCGAACGTGCCAAGGGTGGAGGAAAAGACGCTCCCTGGACAA
AGTCCACTGATGGCACTGGCAGTTCTGGTGGCTCTTCTCAATCCCCCCCC
AAGAAGAAAGGACCCAAATTCCAACAGATCTCCTTGACCTGCCGTCAGTT
TAGTATCGACGACATTCAAGACGTCACCTTCGAAGGTAGTCACCTCGTTG
ATGTCCCCTTCCTCGGCTTGCCAGAAGTCGCCGTGTTTGGGCGGTCCAAT
GTCGGGAAATCTTCTATGCTCAACTGCCTCACAGGGAATAACAAGAAGGT
CGCCGTCGTCTCCAAAACCCCCGGCCGGACTCAACAAATCAATCTCTTTA
AGGTCCACGACTCCAACGGGCCTGTCGCTGTTCTCGTTGACCTACCAGGA
TACGGCTACGCCAAGCTACCCAAGGCCCTTCAAAGCGACATCGGTACACA
GGTCCGTCAATACCTCAGCGACCGCCCCACCCTCCGACTCGCCGTCCTCC
TCATGGATGCTCGCCGGGACCCACAAAAAAGTGACCTTAACATGATGAAG
TATTTCCGCGCCGCCAACGTGCCGTTGCTGGTACTCGGCACCAAAGTCGA
TAAGCTCAATCAAGAAGAGATCGGACCAAATCTAGGGAAGTTGAATCAAT
ACTTCAAGCTGCCGGAGGGCATGCCCGTGGCCTTTTCCTCAGTAACGGGA
GTGAATAAACGGGCGGTCTGGAATGCCATTCGCGATGCATGCGTAGGTGA
ATACCTTGATTTGAGTGAAGAGGCGCAGGAGGCCAACGCTTTGGTGCAAA
AATTATCTCAAGGGAAAGATGAAAAGGACAACTGATGAGTGTATACGAGA
AGGAAGAAGAAAAATGTAGCAGCCAGTAAATAAAAGCAAAGCGAAAGTAC
GCAAACGAATTGCCCC

protein sequence of jgi.p|Nanoce1779_2|578073

>mRNA_1825-protein ID=mRNA_1825-protein|Name=jgi.p|Nanoce1779_2|578073|organism=Nannochloropsis oceanica|type=polypeptide|length=411bp
MRRRHPLHPTMHLILLLLALLLAFFTGTSRSMSADSIMVRTKTAFMSAPT
PPAGHERRRPPFTPKYPSSRRHAGGSTNDDGGGYKAKKERQQKEKDKLSA
LMAKQEREAVKKYMEKEAKKDLESQAKIRQAQAYMAERAKGGGKDAPWTK
STDGTGSSGGSSQSPPKKKGPKFQQISLTCRQFSIDDIQDVTFEGSHLVD
VPFLGLPEVAVFGRSNVGKSSMLNCLTGNNKKVAVVSKTPGRTQQINLFK
VHDSNGPVAVLVDLPGYGYAKLPKALQSDIGTQVRQYLSDRPTLRLAVLL
MDARRDPQKSDLNMMKYFRAANVPLLVLGTKVDKLNQEEIGPNLGKLNQY
FKLPEGMPVAFSSVTGVNKRAVWNAIRDACVGEYLDLSEEAQEANALVQK
LSQGKDEKDN*

mRNA from alignment at scaffold_4:102360..103775+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1825 ID=mRNA_1825|Name=jgi.p|Nanoce1779_2|578073|organism=Nannochloropsis oceanica|type=mRNA|length=1416bp|location=Sequence derived from alignment at scaffold_4:102360..103775+ (Nannochloropsis oceanica)
ACAGAACGCGCTTGCTGTTACCGCCGTTCTCCACCTGCTTGTTTGCTGAG
TGATTGCACACGTACGACCGACGGCCAAGGAGAGCTCAACTACAACTTAC
CCATGAGGAGAAGACATCCGCTCCATCCCACGATGCATCTGATACTGCTC
CTGCTGGCACTCCTTTTGGCTTTCTTCACCGGTACAAGCCGCAGCATGTC
GGCTGACAGCATCATGGTGAGGACTAAAACTGCATTTATGTCTGCCCCTA
CTCCGCCCGCAGGACACGAAAGAAGAAGACCGCCGTTCACGCCAAAGTAC
CCTAGTAGCCGCCGGCACGCAGGCGGCAGCACTAATGACGATGGCGGTGG
GTACAAGGCCAAGAAGGAGAGGCAACAAAAGGAAAAGGACAAGCTCTCAG
CCCTGATGGCCAAGCAAGAACGAGAAGCCGTCAAGAAATACATGGAAAAA
GAGGCGAAAAAAGACCTCGAATCCCAAGCCAAAATCCGCCAAGCCCAAGC
CTACATGGCCGAACGTGCCAAGGGTGGAGGAAAAGACGCTCCCTGGACAA
AGTCCACTGATGGCACTGGCAGTTCTGGTGGCTCTTCTCAATCCCCCCCC
AAGAAGAAAGGACCCAAATTCCAACAGATCTCCTTGACCTGCCGTCAGTT
TAGTATCGACGACATTCAAGACGTCACCTTCGAAGGTAGTCACCTCGTTG
ATGTCCCCTTCCTCGGCTTGCCAGAAGTCGCCGTGTTTGGGCGGTCCAAT
GTCGGGAAATCTTCTATGCTCAACTGCCTCACAGGGAATAACAAGAAGGT
CGCCGTCGTCTCCAAAACCCCCGGCCGGACTCAACAAATCAATCTCTTTA
AGGTCCACGACTCCAACGGGCCTGTCGCTGTTCTCGTTGACCTACCAGGA
TACGGCTACGCCAAGCTACCCAAGGCCCTTCAAAGCGACATCGGTACACA
GGTCCGTCAATACCTCAGCGACCGCCCCACCCTCCGACTCGCCGTCCTCC
TCATGGATGCTCGCCGGGACCCACAAAAAAGTGACCTTAACATGATGAAG
TATTTCCGCGCCGCCAACGTGCCGTTGCTGGTACTCGGCACCAAAGTCGA
TAAGCTCAATCAAGAAGAGATCGGACCAAATCTAGGGAAGTTGAATCAAT
ACTTCAAGCTGCCGGAGGGCATGCCCGTGGCCTTTTCCTCAGTAACGGGA
GTGAATAAACGGGCGGTCTGGAATGCCATTCGCGATGCATGCGTAGGTGA
ATACCTTGATTTGAGTGAAGAGGCGCAGGAGGCCAACGCTTTGGTGCAAA
AATTATCTCAAGGGAAAGATGAAAAGGACAACTGATGAGTGTATACGAGA
AGGAAGAAGAAAAATGTAGCAGCCAGTAAATAAAAGCAAAGCGAAAGTAC
GCAAACGAATTGCCCC

Coding sequence (CDS) from alignment at scaffold_4:102360..103775+

>mRNA_1825 ID=mRNA_1825|Name=jgi.p|Nanoce1779_2|578073|organism=Nannochloropsis oceanica|type=CDS|length=1233bp|location=Sequence derived from alignment at scaffold_4:102360..103775+ (Nannochloropsis oceanica)
ATGAGGAGAAGACATCCGCTCCATCCCACGATGCATCTGATACTGCTCCT
GCTGGCACTCCTTTTGGCTTTCTTCACCGGTACAAGCCGCAGCATGTCGG
CTGACAGCATCATGGTGAGGACTAAAACTGCATTTATGTCTGCCCCTACT
CCGCCCGCAGGACACGAAAGAAGAAGACCGCCGTTCACGCCAAAGTACCC
TAGTAGCCGCCGGCACGCAGGCGGCAGCACTAATGACGATGGCGGTGGGT
ACAAGGCCAAGAAGGAGAGGCAACAAAAGGAAAAGGACAAGCTCTCAGCC
CTGATGGCCAAGCAAGAACGAGAAGCCGTCAAGAAATACATGGAAAAAGA
GGCGAAAAAAGACCTCGAATCCCAAGCCAAAATCCGCCAAGCCCAAGCCT
ACATGGCCGAACGTGCCAAGGGTGGAGGAAAAGACGCTCCCTGGACAAAG
TCCACTGATGGCACTGGCAGTTCTGGTGGCTCTTCTCAATCCCCCCCCAA
GAAGAAAGGACCCAAATTCCAACAGATCTCCTTGACCTGCCGTCAGTTTA
GTATCGACGACATTCAAGACGTCACCTTCGAAGGTAGTCACCTCGTTGAT
GTCCCCTTCCTCGGCTTGCCAGAAGTCGCCGTGTTTGGGCGGTCCAATGT
CGGGAAATCTTCTATGCTCAACTGCCTCACAGGGAATAACAAGAAGGTCG
CCGTCGTCTCCAAAACCCCCGGCCGGACTCAACAAATCAATCTCTTTAAG
GTCCACGACTCCAACGGGCCTGTCGCTGTTCTCGTTGACCTACCAGGATA
CGGCTACGCCAAGCTACCCAAGGCCCTTCAAAGCGACATCGGTACACAGG
TCCGTCAATACCTCAGCGACCGCCCCACCCTCCGACTCGCCGTCCTCCTC
ATGGATGCTCGCCGGGACCCACAAAAAAGTGACCTTAACATGATGAAGTA
TTTCCGCGCCGCCAACGTGCCGTTGCTGGTACTCGGCACCAAAGTCGATA
AGCTCAATCAAGAAGAGATCGGACCAAATCTAGGGAAGTTGAATCAATAC
TTCAAGCTGCCGGAGGGCATGCCCGTGGCCTTTTCCTCAGTAACGGGAGT
GAATAAACGGGCGGTCTGGAATGCCATTCGCGATGCATGCGTAGGTGAAT
ACCTTGATTTGAGTGAAGAGGCGCAGGAGGCCAACGCTTTGGTGCAAAAA
TTATCTCAAGGGAAAGATGAAAAGGACAACTGA

Synonyms

Publications