jgi.p|Nanoce1779_2|578069, mRNA_1824 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|578069
Unique Name	mRNA_1824
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	762
Alignment location	scaffold_4:100745..102171 +

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Properties


Property Name	Value
TranscriptId	578155
Track	FilteredModels2
ProteinId	578069

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:100745..102171 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578069	gene_1824	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578069	mRNA_1824-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1824	CDS_1824	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:100745..102171+
coding sequence from alignment at scaffold_4:100745..102171+

mRNA sequence

>mRNA_1824 ID=mRNA_1824|Name=jgi.p|Nanoce1779_2|578069|organism=Nannochloropsis oceanica|type=mRNA|length=762bp
ACAGGGACAGCACTTACCAATCAACACTTGTCTGATAAGTCCGCAGCCGG
ATACCGACCGCATTTCGTCAACCTCGTTCTCCTTCCTTCTTGGCCTGCGC
GTACATGAACCACGAGCACCATCACCACGACACTCATCGAAATGACAGCG
ACACTTGTCTATCAAGTCCCGGCAGGCGATTTTGGGGCTTATTTACTCGG
GCCCTGGAAGCGCACTCTCGAGTGCCGGGAGTTTGGCAAGACCTACGAGC
ATCAACGGACGTCCAGTTCAGTTGTGGTAATTGAACATGCCATAGGCGTC
GCAGCCGAGCCGCCGACTTATTTTCTCAATTGGAAGTTTGGCCGTTCATT
GGAGAAGGAGGATCTGAAACTTGGCTACTGCATGCACTTTATGCGCGACA
CGGATATAACGAATCTGGAATGGCGGTATGAAGAAAACAAATGCCATGGT
TGGTTCCTGCCGCATATTGCCGTCGCCACCCTCAATTTTCGGACGCCCGA
GCGCTCCACGACGGTGACATACAGGGTAGTGGACGAGGATACCATGGCGG
TCTCCATTGTGGAGGTGGAAAGTCATCGATCCGTTTTACAATACGGACAC
ATGCTGCGCTTGCCAGTGATGGACAGCAATATGAATGTAAGCGGCGTTGG
GAGACGGAGTAGGGGTGGCATGGGTGGAGAGAGATGATGATGATGCTGTG
AGGCGAAAGCAAAGGTATAACGCGACGCTTGACAAAAGAAATATAGATAT
AAACATGCCGCC

protein sequence of jgi.p|Nanoce1779_2|578069

>mRNA_1824-protein ID=mRNA_1824-protein|Name=jgi.p|Nanoce1779_2|578069|organism=Nannochloropsis oceanica|type=polypeptide|length=182bp
MTATLVYQVPAGDFGAYLLGPWKRTLECREFGKTYEHQRTSSSVVVIEHA
IGVAAEPPTYFLNWKFGRSLEKEDLKLGYCMHFMRDTDITNLEWRYEENK
CHGWFLPHIAVATLNFRTPERSTTVTYRVVDEDTMAVSIVEVESHRSVLQ
YGHMLRLPVMDSNMNVSGVGRRSRGGMGGER*

mRNA from alignment at scaffold_4:100745..102171+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1824 ID=mRNA_1824|Name=jgi.p|Nanoce1779_2|578069|organism=Nannochloropsis oceanica|type=mRNA|length=1427bp|location=Sequence derived from alignment at scaffold_4:100745..102171+ (Nannochloropsis oceanica)
ACAGGGACAGCACTTACCAATCAACACTTGTCTGATAAGTCCGCAGCCGG
ATACCGACCGCATTTCGTCAACCTCGTTCTCCTTCCTTCTTGGCCTGCGC
GTACATGAACCACGAGCACCATCACCACGACACTCATCGAAATGACAGCG
ACACTTGTCTATCAAGTCCCGGCAGGCGATTTTGGGGCTTATTTACTCGG
GCCCTGGAAGCGCACTCTCGAGTGCCGGGAGTTTGGCAAGACCTACGAGC
ATCAACGGACGTCCAGTTCAGTTGTGGTAATTGAACATGCCATAGGCGTC
GCAGCCGAGCCGCCGACTTATGTAAGTTATGCATGCATATGTGTAGGCAA
TCATCGAGTGTGAACTTGCGGGAAGACAGGTGCGCGCTTCGCTTCCCGCG
GTAAGTGTGGATGGAGAAATGGGAAAGGGCATGCGACGGAAAGAGAGGTG
ATGGCAGCAATGCGATTTGCCTGTACCCACCAAGCTGTATACGTATGAGG
TTTCTGGATAGATATGCCGCTACGCACCAGGGGAGAATAAAATAATAAGG
TTGAAAAGTAAGACGATAGGGCATATTCAAATTAGTCTCATGGCGGCCAC
TGTGAGTGCTTGGCGCATGGTCTTTTGAAGCACTCTCTCGGCCTGCTTTC
CTTCACACAGCATACTCATGTGCCTGTATTTTATTATTTCGGATGTTGGC
TATTTTGACATGTAGCCAAATATCTGATAACGACGACATTGATACCAAAG
CTTGCAGCAATTGCCACCCAGCCAATTTACCGCACTTTACCCCATCCATT
CACTCTCACTCCTTCTTGACACCCCTACACCCAACAACAGTTTCTCAATT
GGAAGTTTGGCCGTTCATTGGAGAAGGAGGATCTGAAACTTGGCTACTGC
ATGCACTTTATGCGCGACACGGATATAACGAATCTGGAATGGCGGTATGA
AGGTATGTGCACCATGCTGGATAGGCGTATAGGGTCACGCTGATTGAGAG
CAGGAAAGAAAATAGTACAGTGTGGATCAAATCATTTTTCACACGATGTA
CTCATAAAATTTACTCTTTCCTTTTTTTGACCCAATCCTCTTGCCCAGAA
AACAAATGCCATGGTTGGTTCCTGCCGCATATTGCCGTCGCCACCCTCAA
TTTTCGGACGCCCGAGCGCTCCACGACGGTGACATACAGGGTAGTGGACG
AGGATACCATGGCGGTCTCCATTGTGGAGGTGGAAAGTCATCGATCCGTT
TTACAATACGGACACATGCTGCGCTTGCCAGTGATGGACAGCAATATGAA
TGTAAGCGGCGTTGGGAGACGGAGTAGGGGTGGCATGGGTGGAGAGAGAT
GATGATGATGCTGTGAGGCGAAAGCAAAGGTATAACGCGACGCTTGACAA
AAGAAATATAGATATAAACATGCCGCC

Coding sequence (CDS) from alignment at scaffold_4:100745..102171+

>mRNA_1824 ID=mRNA_1824|Name=jgi.p|Nanoce1779_2|578069|organism=Nannochloropsis oceanica|type=CDS|length=1638bp|location=Sequence derived from alignment at scaffold_4:100745..102171+ (Nannochloropsis oceanica)
ATGACAGCGACACTTGTCTATCAAGTCCCGGCAGGCGATTTTGGGGCTTA
TTTACTCGGGCCCTGGAAGCGCACTCTCGAGTGCCGGGAGTTTGGCAAGA
CCTACGAGCATCAACGGACGTCCAGTTCAGTTGTGGTAATTGAACATGCC
ATAGGCGTCGCAGCCGAGCCGCCGACTTATTTTCTCAATTGGAAGTTTGG
CCGTTCATTGGAGAAGGAGGATCTGAAACTTGGCTACTGCATGCACTTTA
TGCGCGACACGGATATAACGAATCTGGAATGGCGGTATGAAGAAAACAAA
TGCCATGGTTGGTTCCTGCCGCATATTGCCGTCGCCACCCTCAATTTTCG
GACGCCCGAGCGCTCCACGACGGTGACATACAGGGTAGTGGACGAGGATA
CCATGGCGGTCTCCATTGTGGAGGTGGAAAGTCATCGATCCGTTTTACAA
TACGGACACATGCTGCGCTTGCCAGTGATGGACAGCAATATGAATGTAAG
CGGCGTTGGGAGACGGAGTAGGGGTGGCATGGGTGGAGAGAGATGAATGA
CAGCGACACTTGTCTATCAAGTCCCGGCAGGCGATTTTGGGGCTTATTTA
CTCGGGCCCTGGAAGCGCACTCTCGAGTGCCGGGAGTTTGGCAAGACCTA
CGAGCATCAACGGACGTCCAGTTCAGTTGTGGTAATTGAACATGCCATAG
GCGTCGCAGCCGAGCCGCCGACTTATTTTCTCAATTGGAAGTTTGGCCGT
TCATTGGAGAAGGAGGATCTGAAACTTGGCTACTGCATGCACTTTATGCG
CGACACGGATATAACGAATCTGGAATGGCGGTATGAAGAAAACAAATGCC
ATGGTTGGTTCCTGCCGCATATTGCCGTCGCCACCCTCAATTTTCGGACG
CCCGAGCGCTCCACGACGGTGACATACAGGGTAGTGGACGAGGATACCAT
GGCGGTCTCCATTGTGGAGGTGGAAAGTCATCGATCCGTTTTACAATACG
GACACATGCTGCGCTTGCCAGTGATGGACAGCAATATGAATGTAAGCGGC
GTTGGGAGACGGAGTAGGGGTGGCATGGGTGGAGAGAGATGAATGACAGC
GACACTTGTCTATCAAGTCCCGGCAGGCGATTTTGGGGCTTATTTACTCG
GGCCCTGGAAGCGCACTCTCGAGTGCCGGGAGTTTGGCAAGACCTACGAG
CATCAACGGACGTCCAGTTCAGTTGTGGTAATTGAACATGCCATAGGCGT
CGCAGCCGAGCCGCCGACTTATTTTCTCAATTGGAAGTTTGGCCGTTCAT
TGGAGAAGGAGGATCTGAAACTTGGCTACTGCATGCACTTTATGCGCGAC
ACGGATATAACGAATCTGGAATGGCGGTATGAAGAAAACAAATGCCATGG
TTGGTTCCTGCCGCATATTGCCGTCGCCACCCTCAATTTTCGGACGCCCG
AGCGCTCCACGACGGTGACATACAGGGTAGTGGACGAGGATACCATGGCG
GTCTCCATTGTGGAGGTGGAAAGTCATCGATCCGTTTTACAATACGGACA
CATGCTGCGCTTGCCAGTGATGGACAGCAATATGAATGTAAGCGGCGTTG
GGAGACGGAGTAGGGGTGGCATGGGTGGAGAGAGATGA

Synonyms

Publications