jgi.p|Nanoce1779_2|563511, mRNA_1823 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|563511
Unique Name	mRNA_1823
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1458
Alignment location	scaffold_4:98655..100112 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	563597
Track	FilteredModels2
ProteinId	563511

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:98655..100112 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|563511	gene_1823	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|563511	mRNA_1823-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1823	CDS_1823	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:98655..100112+
coding sequence from alignment at scaffold_4:98655..100112+

mRNA sequence

>mRNA_1823 ID=mRNA_1823|Name=jgi.p|Nanoce1779_2|563511|organism=Nannochloropsis oceanica|type=mRNA|length=1458bp
ATGAACTGGTCCTCCTTTTTTTTTTCCTTCTTCTTCTTCCTAGCCGTGCT
TGCCTACACAGGTGCTGCGGTACAAACTCGCAGCGGGGCCGGGCAGCCTA
TTGTCGTAACGCCGCCAATAGCTCCAGTAGCTGTACATGCTGCACCGGCT
ACGCCTACTTTGCGTCTCCTCCCGGCGCTAAACCCGGCCGGCGGCAGCGC
TTACGTAGTTGCTAATGTCCAGGACACAGGCGCTGGAGGTCTTGGCAGAG
GCGATGCCGAAGCCGCTGTGGGTGACGTGGTCCTCAAAAGAGATAACGTA
GCTATTGGTACGGCTGATAGTGTAGAGATACGACCGGGACTTGGAGCAGA
TGCTGACAGTCTCCTGCTGCAATATAATCATTCTCCCGTGGAAACCTACA
ACTGGCTGCGTGATACAAGTTATGAAGCGCTGCGATCGGTCCGAGGCATG
CCACTGTGGATTAGGAATGAGATTCAAGCTGTTATCGACCAATGTAAAAA
TATTGTGCTTGCACATCCTTTGGCATTGGACGCTACTGTTTCGGCAATCG
CGGTCATAACCGTCTATAACTATGGACCCACAATTTTGAACTTCGCCTTG
AAAGATATTCAGTGCTACGTGGATGGAAGTGAAGATTACCGCGCCGTACT
GCAAGCGGCCAATCCCCACGCTCCAATGAGTCGATATGAGGAATGGGCTG
TGTCATACCAGGGGCTTGAGGGCTGCCGCACTGGCACCCGTCCCTACCAA
GGCCGGCTACAGGAGGCGCGCCACGCGAAATTTTCTCAAGAGAGAGCAAA
GCAAGAACGCAAATACCAGGACAATTCGCATAGGCACATCCAAGCCTTGC
AATATGTCTATGAAGAGTATGAGGGCACGTGTGATGCCCCTCAGGGTGCC
GACCAGCGGCAACCGCAGGGCACTAAGGCCGGAGCGCACGATGAAGCGAG
TATTTTGAAGTCATGTGAGGATCAAGATGCAGTTTATAGGGCGTCATATA
CCAAGAAGCGAAGGCATGGCAAAAATGACATCAAGCCATGGTTGGCGAAA
GAAAGCACGTATGACGAACTAAAAATTGGGGCTCTGGAGATTCATCAAAT
TCTGGACTTGGTCGTGCTTTGTGTGCCTGTTGTCATATATGTCATCTTTG
GGGATAATCAAGAGGTATTATTCGCCTTTTCGAGTCTGTCGCTTTTACTT
GGAATCGTCTTTCTCTTCGGGGAGCAATCTTCTTTCTATGAAGACTTTGA
TCGACGTGCACGCGCGGGGGAGTTGGTCGAGCGAAAGGACCAAAATCAAT
TTGTGGCGCTACTGTTCATGATGGGAGTAATCAAAGACCTTGCCATTCTT
CTGGGCAGTCTTGCATTGTTCCAGATATTTGGCCATGTCTGGGTATGGGC
CACTCGTACCTATCCCACCTTGCTGTTGTGCGGTCCATCAGGAATAAGGA
GTAAGTAG

protein sequence of jgi.p|Nanoce1779_2|563511

>mRNA_1823-protein ID=mRNA_1823-protein|Name=jgi.p|Nanoce1779_2|563511|organism=Nannochloropsis oceanica|type=polypeptide|length=486bp
MNWSSFFFSFFFFLAVLAYTGAAVQTRSGAGQPIVVTPPIAPVAVHAAPA
TPTLRLLPALNPAGGSAYVVANVQDTGAGGLGRGDAEAAVGDVVLKRDNV
AIGTADSVEIRPGLGADADSLLLQYNHSPVETYNWLRDTSYEALRSVRGM
PLWIRNEIQAVIDQCKNIVLAHPLALDATVSAIAVITVYNYGPTILNFAL
KDIQCYVDGSEDYRAVLQAANPHAPMSRYEEWAVSYQGLEGCRTGTRPYQ
GRLQEARHAKFSQERAKQERKYQDNSHRHIQALQYVYEEYEGTCDAPQGA
DQRQPQGTKAGAHDEASILKSCEDQDAVYRASYTKKRRHGKNDIKPWLAK
ESTYDELKIGALEIHQILDLVVLCVPVVIYVIFGDNQEVLFAFSSLSLLL
GIVFLFGEQSSFYEDFDRRARAGELVERKDQNQFVALLFMMGVIKDLAIL
LGSLALFQIFGHVWVWATRTYPTLLLCGPSGIRSK*

mRNA from alignment at scaffold_4:98655..100112+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1823 ID=mRNA_1823|Name=jgi.p|Nanoce1779_2|563511|organism=Nannochloropsis oceanica|type=mRNA|length=1458bp|location=Sequence derived from alignment at scaffold_4:98655..100112+ (Nannochloropsis oceanica)
ATGAACTGGTCCTCCTTTTTTTTTTCCTTCTTCTTCTTCCTAGCCGTGCT
TGCCTACACAGGTGCTGCGGTACAAACTCGCAGCGGGGCCGGGCAGCCTA
TTGTCGTAACGCCGCCAATAGCTCCAGTAGCTGTACATGCTGCACCGGCT
ACGCCTACTTTGCGTCTCCTCCCGGCGCTAAACCCGGCCGGCGGCAGCGC
TTACGTAGTTGCTAATGTCCAGGACACAGGCGCTGGAGGTCTTGGCAGAG
GCGATGCCGAAGCCGCTGTGGGTGACGTGGTCCTCAAAAGAGATAACGTA
GCTATTGGTACGGCTGATAGTGTAGAGATACGACCGGGACTTGGAGCAGA
TGCTGACAGTCTCCTGCTGCAATATAATCATTCTCCCGTGGAAACCTACA
ACTGGCTGCGTGATACAAGTTATGAAGCGCTGCGATCGGTCCGAGGCATG
CCACTGTGGATTAGGAATGAGATTCAAGCTGTTATCGACCAATGTAAAAA
TATTGTGCTTGCACATCCTTTGGCATTGGACGCTACTGTTTCGGCAATCG
CGGTCATAACCGTCTATAACTATGGACCCACAATTTTGAACTTCGCCTTG
AAAGATATTCAGTGCTACGTGGATGGAAGTGAAGATTACCGCGCCGTACT
GCAAGCGGCCAATCCCCACGCTCCAATGAGTCGATATGAGGAATGGGCTG
TGTCATACCAGGGGCTTGAGGGCTGCCGCACTGGCACCCGTCCCTACCAA
GGCCGGCTACAGGAGGCGCGCCACGCGAAATTTTCTCAAGAGAGAGCAAA
GCAAGAACGCAAATACCAGGACAATTCGCATAGGCACATCCAAGCCTTGC
AATATGTCTATGAAGAGTATGAGGGCACGTGTGATGCCCCTCAGGGTGCC
GACCAGCGGCAACCGCAGGGCACTAAGGCCGGAGCGCACGATGAAGCGAG
TATTTTGAAGTCATGTGAGGATCAAGATGCAGTTTATAGGGCGTCATATA
CCAAGAAGCGAAGGCATGGCAAAAATGACATCAAGCCATGGTTGGCGAAA
GAAAGCACGTATGACGAACTAAAAATTGGGGCTCTGGAGATTCATCAAAT
TCTGGACTTGGTCGTGCTTTGTGTGCCTGTTGTCATATATGTCATCTTTG
GGGATAATCAAGAGGTATTATTCGCCTTTTCGAGTCTGTCGCTTTTACTT
GGAATCGTCTTTCTCTTCGGGGAGCAATCTTCTTTCTATGAAGACTTTGA
TCGACGTGCACGCGCGGGGGAGTTGGTCGAGCGAAAGGACCAAAATCAAT
TTGTGGCGCTACTGTTCATGATGGGAGTAATCAAAGACCTTGCCATTCTT
CTGGGCAGTCTTGCATTGTTCCAGATATTTGGCCATGTCTGGGTATGGGC
CACTCGTACCTATCCCACCTTGCTGTTGTGCGGTCCATCAGGAATAAGGA
GTAAGTAG

Coding sequence (CDS) from alignment at scaffold_4:98655..100112+

>mRNA_1823 ID=mRNA_1823|Name=jgi.p|Nanoce1779_2|563511|organism=Nannochloropsis oceanica|type=CDS|length=1458bp|location=Sequence derived from alignment at scaffold_4:98655..100112+ (Nannochloropsis oceanica)
ATGAACTGGTCCTCCTTTTTTTTTTCCTTCTTCTTCTTCCTAGCCGTGCT
TGCCTACACAGGTGCTGCGGTACAAACTCGCAGCGGGGCCGGGCAGCCTA
TTGTCGTAACGCCGCCAATAGCTCCAGTAGCTGTACATGCTGCACCGGCT
ACGCCTACTTTGCGTCTCCTCCCGGCGCTAAACCCGGCCGGCGGCAGCGC
TTACGTAGTTGCTAATGTCCAGGACACAGGCGCTGGAGGTCTTGGCAGAG
GCGATGCCGAAGCCGCTGTGGGTGACGTGGTCCTCAAAAGAGATAACGTA
GCTATTGGTACGGCTGATAGTGTAGAGATACGACCGGGACTTGGAGCAGA
TGCTGACAGTCTCCTGCTGCAATATAATCATTCTCCCGTGGAAACCTACA
ACTGGCTGCGTGATACAAGTTATGAAGCGCTGCGATCGGTCCGAGGCATG
CCACTGTGGATTAGGAATGAGATTCAAGCTGTTATCGACCAATGTAAAAA
TATTGTGCTTGCACATCCTTTGGCATTGGACGCTACTGTTTCGGCAATCG
CGGTCATAACCGTCTATAACTATGGACCCACAATTTTGAACTTCGCCTTG
AAAGATATTCAGTGCTACGTGGATGGAAGTGAAGATTACCGCGCCGTACT
GCAAGCGGCCAATCCCCACGCTCCAATGAGTCGATATGAGGAATGGGCTG
TGTCATACCAGGGGCTTGAGGGCTGCCGCACTGGCACCCGTCCCTACCAA
GGCCGGCTACAGGAGGCGCGCCACGCGAAATTTTCTCAAGAGAGAGCAAA
GCAAGAACGCAAATACCAGGACAATTCGCATAGGCACATCCAAGCCTTGC
AATATGTCTATGAAGAGTATGAGGGCACGTGTGATGCCCCTCAGGGTGCC
GACCAGCGGCAACCGCAGGGCACTAAGGCCGGAGCGCACGATGAAGCGAG
TATTTTGAAGTCATGTGAGGATCAAGATGCAGTTTATAGGGCGTCATATA
CCAAGAAGCGAAGGCATGGCAAAAATGACATCAAGCCATGGTTGGCGAAA
GAAAGCACGTATGACGAACTAAAAATTGGGGCTCTGGAGATTCATCAAAT
TCTGGACTTGGTCGTGCTTTGTGTGCCTGTTGTCATATATGTCATCTTTG
GGGATAATCAAGAGGTATTATTCGCCTTTTCGAGTCTGTCGCTTTTACTT
GGAATCGTCTTTCTCTTCGGGGAGCAATCTTCTTTCTATGAAGACTTTGA
TCGACGTGCACGCGCGGGGGAGTTGGTCGAGCGAAAGGACCAAAATCAAT
TTGTGGCGCTACTGTTCATGATGGGAGTAATCAAAGACCTTGCCATTCTT
CTGGGCAGTCTTGCATTGTTCCAGATATTTGGCCATGTCTGGGTATGGGC
CACTCGTACCTATCCCACCTTGCTGTTGTGCGGTCCATCAGGAATAAGGA
GTAAGTAG

Synonyms

Publications