jgi.p|Nanoce1779_2|578064, mRNA_1822 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|578064
Unique Name	mRNA_1822
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1063
Alignment location	scaffold_4:96189..97814 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	578150
Track	FilteredModels2
ProteinId	578064

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:96189..97814 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578064	gene_1822	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578064	mRNA_1822-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1822	CDS_1822	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:96189..97814-
coding sequence from alignment at scaffold_4:96189..97814-

mRNA sequence

>mRNA_1822 ID=mRNA_1822|Name=jgi.p|Nanoce1779_2|578064|organism=Nannochloropsis oceanica|type=mRNA|length=1063bp
ACAGGTGCATACAGGCAACCTCCACCGAGGAGTCCCTCCGCCTCTGCGCC
CCTCCCTTCCTCCTTCCCAGTCCATGCCTGCCGCCGCCTCTGCCGCCGCT
TCGGCTGCCAGAAGGCAACTGCAAGCCACCATTGTCAAGAGCGGCTTGCT
CAAGACGAATGCGGGGGTGGTGCCTCGTCCATCTCCTTCCCTGTTTTACT
TTCCGGGCATCACATCCAAGCCCGTGCATGCCGCCAGCAACTTTCATTGG
GCTCGAGTGCTGGAGGAGGAGCACGCGACGATCAAGAAGGAGTACTTAAA
CCTTAGGGCGAGTAAGATTCAATCGGACTATACGCAGCAGGATGGAGAGC
ACAGCTTGCACCAAGGCAAGTGGGACTGGCATTCTTACGTTCTCAAAGGC
CAGGTCCAAGCCCCCTTTGCCGAGCATTGCCCCGAGACCAGCCGCCTCCT
CCAAGAATTTCATAAGCAAGCCTTCTTGATGCTCGGGACGCCCTTCTCCT
TCTCCTTCTTCTCCACTCTGCATGCCCAGAGTGTGATTGCCCCTCATTCG
GGTCCTTCCAACCTGAGGCTGCGGTGCCATTTGCCCATCATCGTGCCCAA
GAGAAAGGGGAAGACGGGAGGGAAGGCGGATGGGTCTCAAACATCTTCTG
CTTCAACCCCTGGCGGGGCTTCCTCCCCCCCTTCCTCCTCCCCTCCTATG
GACGAATACGACTCCCTGGAGGAGATTCAAGCCACTGTCCCCTGTGGCAT
TCGTATAGGTGACCAAGTTCGGGCGTGGGAGGAGGGGAAATGCTTGGTCT
TTGACGACGCCTACGAGCACGAGGTCTGGAATCGGACGGAGGAAGAACGA
GTATTGCTGCTGGTGGACTTCTGGCATCCCGAAATCGACCGCGAGGAGCG
GGTAGCGATCCAGGGAATGTTTGATTATGCGGCCAAGCAGGGTTGGATGA
AAGGAGGATGAGGAAGGGAGGGAGGGAGGGAGGGAAACAGAGAGAGATCC
GCTTCGGTATATAATAATATGAAATGGCTCAGGCCCACATGAAATGAAAT
AAATGGAAAATGG

protein sequence of jgi.p|Nanoce1779_2|578064

>mRNA_1822-protein ID=mRNA_1822-protein|Name=jgi.p|Nanoce1779_2|578064|organism=Nannochloropsis oceanica|type=polypeptide|length=296bp
MPAAASAAASAARRQLQATIVKSGLLKTNAGVVPRPSPSLFYFPGITSKP
VHAASNFHWARVLEEEHATIKKEYLNLRASKIQSDYTQQDGEHSLHQGKW
DWHSYVLKGQVQAPFAEHCPETSRLLQEFHKQAFLMLGTPFSFSFFSTLH
AQSVIAPHSGPSNLRLRCHLPIIVPKRKGKTGGKADGSQTSSASTPGGAS
SPPSSSPPMDEYDSLEEIQATVPCGIRIGDQVRAWEEGKCLVFDDAYEHE
VWNRTEEERVLLLVDFWHPEIDREERVAIQGMFDYAAKQGWMKGG*

mRNA from alignment at scaffold_4:96189..97814-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1822 ID=mRNA_1822|Name=jgi.p|Nanoce1779_2|578064|organism=Nannochloropsis oceanica|type=mRNA|length=1626bp|location=Sequence derived from alignment at scaffold_4:96189..97814- (Nannochloropsis oceanica)
ACAGGTGCATACAGGCAACCTCCACCGAGGAGTCCCTCCGCCTCTGCGCC
CCTCCCTTCCTCCTTCCCAGTCCATGCCTGCCGCCGCCTCTGCCGCCGCT
TCGGCTGCCAGAAGGCAACTGCAAGCCACCATTGTCAAGAGCGGCTTGCT
CAAGACGAATGCGGGGGTGGTGCCTCGTCCATCTCCTTCCCTGTTTTACT
TTCCGGGCATCACATCCAAGCCCGTGCATGCCGCCAGCAACTTTCATTGG
GCTCGAGTGTACGTATGCGGAGAGTATTGGGAGCAGGCAAGGGGAGGTGT
TGGGATGAGAGGAGTACGACAAATATAATTTTGGATTTTTAAAAGCAGGC
ATGACGTTCTTGTCTGATCGTGTGTCTCTGCCCCCCTTGTTTTTTGGTCC
CACGCAGGCTGGAGGAGGAGCACGCGACGATCAAGAAGGAGTACTTAAAC
CTTAGGGCGAGTAAGATTCAATCGGACTATACGCAGCAGGATGGAGAGCA
CAGCTTGCACCAAGGTCAGTGTGGGGAACGGGAGGGAGTTGTAGGTACCG
CGGGAGAGGGGGAGGGAGGGATGGAGGCGCATAAGGCTTGACTAGACATA
AGAAATGTTTCTGTGTCGTATAACGAATTCCTCCTTCCTCTGTCTTGTGC
CTTTTCCTCCCTATTCCTATCAGGCAAGTGGGACTGGCATTCTTACGTTC
TCAAAGGCCAGGTCCAAGCCCCCTTTGCCGAGCATTGCCCCGAGACCAGC
CGCCTCCTCCAAGAATTTCATAAGCAAGCCTTCTTGATGCTCGGGACGCC
CTTCTCCTTCTCCTTCTTCTCCACTCTGCATGCCCAGAGTGTGATTGCCC
CTCATTCGGGTCCTTCCAACCTGAGGCTGCGGTGCCATTTGCCCATCATC
GTGCCCAAGAGAAAGGGGAAGACGGGAGGGAAGGCGGATGGGTCTCAAAC
ATCTTCTGCTTCAACCCCTGGCGGGGCTTCCTCCCCCCCTTCCTCCTCCC
CTCCTATGGACGAATACGACTCCCTGGAGGAGATTCAAGCCACTGTCCCC
TGTGGCATTCGTATAGGTGACCAAGTTCGGGCGTGGGAGGAGGGGAAATG
CTTGGTCTTTGACGACGCCTACGAGCACGAGGTCTGGAATCGGACGGAGG
AAGAACGAGTATTGCTGCTGGTGGACTTCTGGCATGTAAGCTAGGATGTG
ATGAAGAGCTGTATGTGTTTAATTTGTTTTATCATGTGTGTGGTGCCATT
GCCTTGTTCTTCTCGTTCTTCTTACATGTCTTTGCTCGTTCTGCTTGCTT
TCCTCTCTGTCCTCTGTCCTGTGGGTCGGCAGCGAGGGGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAAAGACCGACGCAGGAAGCCACTCGTTTTAC
ACCTATGCTCACTACCACCACTCGTTTCATATTTCAACAGCCCGAAATCG
ACCGCGAGGAGCGGGTAGCGATCCAGGGAATGTTTGATTATGCGGCCAAG
CAGGGTTGGATGAAAGGAGGATGAGGAAGGGAGGGAGGGAGGGAGGGAAA
CAGAGAGAGATCCGCTTCGGTATATAATAATATGAAATGGCTCAGGCCCA
CATGAAATGAAATAAATGGAAAATGG

Coding sequence (CDS) from alignment at scaffold_4:96189..97814-

>mRNA_1822 ID=mRNA_1822|Name=jgi.p|Nanoce1779_2|578064|organism=Nannochloropsis oceanica|type=CDS|length=3552bp|location=Sequence derived from alignment at scaffold_4:96189..97814- (Nannochloropsis oceanica)
CCCGAAATCGACCGCGAGGAGCGGGTAGCGATCCAGGGAATGTTTGATTA
TGCGGCCAAGCAGGGTTGGATGAAAGGAGGATGAGCAAGTGGGACTGGCA
TTCTTACGTTCTCAAAGGCCAGGTCCAAGCCCCCTTTGCCGAGCATTGCC
CCGAGACCAGCCGCCTCCTCCAAGAATTTCATAAGCAAGCCTTCTTGATG
CTCGGGACGCCCTTCTCCTTCTCCTTCTTCTCCACTCTGCATGCCCAGAG
TGTGATTGCCCCTCATTCGGGTCCTTCCAACCTGAGGCTGCGGTGCCATT
TGCCCATCATCGTGCCCAAGAGAAAGGGGAAGACGGGAGGGAAGGCGGAT
GGGTCTCAAACATCTTCTGCTTCAACCCCTGGCGGGGCTTCCTCCCCCCC
TTCCTCCTCCCCTCCTATGGACGAATACGACTCCCTGGAGGAGATTCAAG
CCACTGTCCCCTGTGGCATTCGTATAGGTGACCAAGTTCGGGCGTGGGAG
GAGGGGAAATGCTTGGTCTTTGACGACGCCTACGAGCACGAGGTCTGGAA
TCGGACGGAGGAAGAACGAGTATTGCTGCTGGTGGACTTCTGGCATGCTG
GAGGAGGAGCACGCGACGATCAAGAAGGAGTACTTAAACCTTAGGGCGAG
TAAGATTCAATCGGACTATACGCAGCAGGATGGAGAGCACAGCTTGCACC
AAGATGCCTGCCGCCGCCTCTGCCGCCGCTTCGGCTGCCAGAAGGCAACT
GCAAGCCACCATTGTCAAGAGCGGCTTGCTCAAGACGAATGCGGGGGTGG
TGCCTCGTCCATCTCCTTCCCTGTTTTACTTTCCGGGCATCACATCCAAG
CCCGTGCATGCCGCCAGCAACTTTCATTGGGCTCGAGTCCCGAAATCGAC
CGCGAGGAGCGGGTAGCGATCCAGGGAATGTTTGATTATGCGGCCAAGCA
GGGTTGGATGAAAGGAGGATGAGCAAGTGGGACTGGCATTCTTACGTTCT
CAAAGGCCAGGTCCAAGCCCCCTTTGCCGAGCATTGCCCCGAGACCAGCC
GCCTCCTCCAAGAATTTCATAAGCAAGCCTTCTTGATGCTCGGGACGCCC
TTCTCCTTCTCCTTCTTCTCCACTCTGCATGCCCAGAGTGTGATTGCCCC
TCATTCGGGTCCTTCCAACCTGAGGCTGCGGTGCCATTTGCCCATCATCG
TGCCCAAGAGAAAGGGGAAGACGGGAGGGAAGGCGGATGGGTCTCAAACA
TCTTCTGCTTCAACCCCTGGCGGGGCTTCCTCCCCCCCTTCCTCCTCCCC
TCCTATGGACGAATACGACTCCCTGGAGGAGATTCAAGCCACTGTCCCCT
GTGGCATTCGTATAGGTGACCAAGTTCGGGCGTGGGAGGAGGGGAAATGC
TTGGTCTTTGACGACGCCTACGAGCACGAGGTCTGGAATCGGACGGAGGA
AGAACGAGTATTGCTGCTGGTGGACTTCTGGCATGCTGGAGGAGGAGCAC
GCGACGATCAAGAAGGAGTACTTAAACCTTAGGGCGAGTAAGATTCAATC
GGACTATACGCAGCAGGATGGAGAGCACAGCTTGCACCAAGATGCCTGCC
GCCGCCTCTGCCGCCGCTTCGGCTGCCAGAAGGCAACTGCAAGCCACCAT
TGTCAAGAGCGGCTTGCTCAAGACGAATGCGGGGGTGGTGCCTCGTCCAT
CTCCTTCCCTGTTTTACTTTCCGGGCATCACATCCAAGCCCGTGCATGCC
GCCAGCAACTTTCATTGGGCTCGAGTCCCGAAATCGACCGCGAGGAGCGG
GTAGCGATCCAGGGAATGTTTGATTATGCGGCCAAGCAGGGTTGGATGAA
AGGAGGATGAGCAAGTGGGACTGGCATTCTTACGTTCTCAAAGGCCAGGT
CCAAGCCCCCTTTGCCGAGCATTGCCCCGAGACCAGCCGCCTCCTCCAAG
AATTTCATAAGCAAGCCTTCTTGATGCTCGGGACGCCCTTCTCCTTCTCC
TTCTTCTCCACTCTGCATGCCCAGAGTGTGATTGCCCCTCATTCGGGTCC
TTCCAACCTGAGGCTGCGGTGCCATTTGCCCATCATCGTGCCCAAGAGAA
AGGGGAAGACGGGAGGGAAGGCGGATGGGTCTCAAACATCTTCTGCTTCA
ACCCCTGGCGGGGCTTCCTCCCCCCCTTCCTCCTCCCCTCCTATGGACGA
ATACGACTCCCTGGAGGAGATTCAAGCCACTGTCCCCTGTGGCATTCGTA
TAGGTGACCAAGTTCGGGCGTGGGAGGAGGGGAAATGCTTGGTCTTTGAC
GACGCCTACGAGCACGAGGTCTGGAATCGGACGGAGGAAGAACGAGTATT
GCTGCTGGTGGACTTCTGGCATGCTGGAGGAGGAGCACGCGACGATCAAG
AAGGAGTACTTAAACCTTAGGGCGAGTAAGATTCAATCGGACTATACGCA
GCAGGATGGAGAGCACAGCTTGCACCAAGATGCCTGCCGCCGCCTCTGCC
GCCGCTTCGGCTGCCAGAAGGCAACTGCAAGCCACCATTGTCAAGAGCGG
CTTGCTCAAGACGAATGCGGGGGTGGTGCCTCGTCCATCTCCTTCCCTGT
TTTACTTTCCGGGCATCACATCCAAGCCCGTGCATGCCGCCAGCAACTTT
CATTGGGCTCGAGTCCCGAAATCGACCGCGAGGAGCGGGTAGCGATCCAG
GGAATGTTTGATTATGCGGCCAAGCAGGGTTGGATGAAAGGAGGATGAGC
AAGTGGGACTGGCATTCTTACGTTCTCAAAGGCCAGGTCCAAGCCCCCTT
TGCCGAGCATTGCCCCGAGACCAGCCGCCTCCTCCAAGAATTTCATAAGC
AAGCCTTCTTGATGCTCGGGACGCCCTTCTCCTTCTCCTTCTTCTCCACT
CTGCATGCCCAGAGTGTGATTGCCCCTCATTCGGGTCCTTCCAACCTGAG
GCTGCGGTGCCATTTGCCCATCATCGTGCCCAAGAGAAAGGGGAAGACGG
GAGGGAAGGCGGATGGGTCTCAAACATCTTCTGCTTCAACCCCTGGCGGG
GCTTCCTCCCCCCCTTCCTCCTCCCCTCCTATGGACGAATACGACTCCCT
GGAGGAGATTCAAGCCACTGTCCCCTGTGGCATTCGTATAGGTGACCAAG
TTCGGGCGTGGGAGGAGGGGAAATGCTTGGTCTTTGACGACGCCTACGAG
CACGAGGTCTGGAATCGGACGGAGGAAGAACGAGTATTGCTGCTGGTGGA
CTTCTGGCATGCTGGAGGAGGAGCACGCGACGATCAAGAAGGAGTACTTA
AACCTTAGGGCGAGTAAGATTCAATCGGACTATACGCAGCAGGATGGAGA
GCACAGCTTGCACCAAGATGCCTGCCGCCGCCTCTGCCGCCGCTTCGGCT
GCCAGAAGGCAACTGCAAGCCACCATTGTCAAGAGCGGCTTGCTCAAGAC
GAATGCGGGGGTGGTGCCTCGTCCATCTCCTTCCCTGTTTTACTTTCCGG
GCATCACATCCAAGCCCGTGCATGCCGCCAGCAACTTTCATTGGGCTCGA
GT

Synonyms

Publications