jgi.p|Nanoce1779_2|576472, mRNA_182 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576472
Unique Name	mRNA_182
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	902
Alignment location	scaffold_3:465322..466223 +

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Properties


Property Name	Value
TranscriptId	576558
Track	FilteredModels2
ProteinId	576472

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:465322..466223 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576472	gene_182	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576472	mRNA_182-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_182	CDS_182	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:465322..466223+
coding sequence from alignment at scaffold_3:465322..466223+

mRNA sequence

>mRNA_182 ID=mRNA_182|Name=jgi.p|Nanoce1779_2|576472|organism=Nannochloropsis oceanica|type=mRNA|length=902bp
ACAGTAAAATCGTCGTTGGCATTTGTGCCTGGCCTGCCGCGACTTGCTCC
GTCACCACCATCATGGGCCATACTGCTGCTTCGAGCCACCGCTACCGTCT
CCTATGCTCGCTTGCTCCGCTTGCCCTCGTCTTGACAGCCCTCTTTCTTG
GTTACCATACACTTGTCACACATGCCCAGTCTTCCTCCATGTCTGGCGTC
ACGACCATGTCGTCGACGACCATCCAGGCTGTACCGGACAATTCCCAGCT
CTCCTCCGCAGGCTCTCAAGCTGGCTGCGACCACTACCGCAACGGGTACT
TGGGCTTGGCCATGTGCGTGAACTTTTATGACGATACGGCAAACGGTACA
TGTAGACAGCAGGGAATGATTTCTTTTCAAAGCGGGGTTATTTTCTGTCT
CGTGGCAGAGGTTGCAAGTCAATGCCCTTGCTTTTTCGATCCGTTGATTT
CAAGCCCTGTGGAACGTAGCGTTAGACCGGCATTTGTGCTGGTGGGCCGA
TCCCGTCGTGAAATAGACTTTTAGAAACATCCTGCATTAAAGCATGAATC
GTGTTTTTTGCACATTTGGTAGGCACTTGTCTTTTCACAGGACCCCTTCT
TCCTCTTTCTCACCGTGCGAAATCACCCCCCGTCTGATGCTCACATCCTC
CCCCTTCTCTCCCTTCATCGATCTGGCTCACTCCAATACATACAGACAAG
GCATACGTGCAAGTGGTGGGCTCCATGACCAACGTGGGTCAAGTAGACAT
CTGCAACCTGACAATTTCCATCTCCTCCCTCGAAACCGCCACATACAAAA
ATCCCGCCTGGCTTCCAAACTACCCCAAGACACAAAGCTTCAAATCCGGA
ACCTACTTCCCCTTCACGGCGATCTTGCCCATGAATGCCGGTTCGTCAGC
TT

protein sequence of jgi.p|Nanoce1779_2|576472

>mRNA_182-protein ID=mRNA_182-protein|Name=jgi.p|Nanoce1779_2|576472|organism=Nannochloropsis oceanica|type=polypeptide|length=154bp
MGHTAASSHRYRLLCSLAPLALVLTALFLGYHTLVTHAQSSSMSGVTTMS
STTIQAVPDNSQLSSAGSQAGCDHYRNGYLGLAMCVNFYDDTANGTCRQQ
GMISFQSGVIFCLVAEVASQCPCFFDPLISSPVERSVRPAFVLVGRSRRE
IDF*

mRNA from alignment at scaffold_3:465322..466223+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_182 ID=mRNA_182|Name=jgi.p|Nanoce1779_2|576472|organism=Nannochloropsis oceanica|type=mRNA|length=902bp|location=Sequence derived from alignment at scaffold_3:465322..466223+ (Nannochloropsis oceanica)
ACAGTAAAATCGTCGTTGGCATTTGTGCCTGGCCTGCCGCGACTTGCTCC
GTCACCACCATCATGGGCCATACTGCTGCTTCGAGCCACCGCTACCGTCT
CCTATGCTCGCTTGCTCCGCTTGCCCTCGTCTTGACAGCCCTCTTTCTTG
GTTACCATACACTTGTCACACATGCCCAGTCTTCCTCCATGTCTGGCGTC
ACGACCATGTCGTCGACGACCATCCAGGCTGTACCGGACAATTCCCAGCT
CTCCTCCGCAGGCTCTCAAGCTGGCTGCGACCACTACCGCAACGGGTACT
TGGGCTTGGCCATGTGCGTGAACTTTTATGACGATACGGCAAACGGTACA
TGTAGACAGCAGGGAATGATTTCTTTTCAAAGCGGGGTTATTTTCTGTCT
CGTGGCAGAGGTTGCAAGTCAATGCCCTTGCTTTTTCGATCCGTTGATTT
CAAGCCCTGTGGAACGTAGCGTTAGACCGGCATTTGTGCTGGTGGGCCGA
TCCCGTCGTGAAATAGACTTTTAGAAACATCCTGCATTAAAGCATGAATC
GTGTTTTTTGCACATTTGGTAGGCACTTGTCTTTTCACAGGACCCCTTCT
TCCTCTTTCTCACCGTGCGAAATCACCCCCCGTCTGATGCTCACATCCTC
CCCCTTCTCTCCCTTCATCGATCTGGCTCACTCCAATACATACAGACAAG
GCATACGTGCAAGTGGTGGGCTCCATGACCAACGTGGGTCAAGTAGACAT
CTGCAACCTGACAATTTCCATCTCCTCCCTCGAAACCGCCACATACAAAA
ATCCCGCCTGGCTTCCAAACTACCCCAAGACACAAAGCTTCAAATCCGGA
ACCTACTTCCCCTTCACGGCGATCTTGCCCATGAATGCCGGTTCGTCAGC
TT

Coding sequence (CDS) from alignment at scaffold_3:465322..466223+

>mRNA_182 ID=mRNA_182|Name=jgi.p|Nanoce1779_2|576472|organism=Nannochloropsis oceanica|type=CDS|length=462bp|location=Sequence derived from alignment at scaffold_3:465322..466223+ (Nannochloropsis oceanica)
ATGGGCCATACTGCTGCTTCGAGCCACCGCTACCGTCTCCTATGCTCGCT
TGCTCCGCTTGCCCTCGTCTTGACAGCCCTCTTTCTTGGTTACCATACAC
TTGTCACACATGCCCAGTCTTCCTCCATGTCTGGCGTCACGACCATGTCG
TCGACGACCATCCAGGCTGTACCGGACAATTCCCAGCTCTCCTCCGCAGG
CTCTCAAGCTGGCTGCGACCACTACCGCAACGGGTACTTGGGCTTGGCCA
TGTGCGTGAACTTTTATGACGATACGGCAAACGGTACATGTAGACAGCAG
GGAATGATTTCTTTTCAAAGCGGGGTTATTTTCTGTCTCGTGGCAGAGGT
TGCAAGTCAATGCCCTTGCTTTTTCGATCCGTTGATTTCAAGCCCTGTGG
AACGTAGCGTTAGACCGGCATTTGTGCTGGTGGGCCGATCCCGTCGTGAA
ATAGACTTTTAG

Synonyms

Publications