jgi.p|Nanoce1779_2|578057, mRNA_1819 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578057
Unique NamemRNA_1819
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1157
Alignment locationscaffold_4:90688..91844 -

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Properties
Property NameValue
TranscriptId578143
TrackFilteredModels2
ProteinId578057
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:90688..91844 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578057gene_1819Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578057mRNA_1819-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1819CDS_1819Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1819 ID=mRNA_1819|Name=jgi.p|Nanoce1779_2|578057|organism=Nannochloropsis oceanica|type=mRNA|length=1157bp
GCTACACTGTGATGGACCTCATCCGCGTTTATGACGTGCTTATTTTCATG
GCTTTGGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCGGCACCACCACC
AGCAGTAGCTGTGAAACCAGCATATTGTATTACAACTCACTGCACACGTC
CTTCCATTTCATTTCAGTTGTTTGAGAGAGCAACGAAAAAAGAGAAGGAA
AAATTGACAAATATCACAAGTATCATCCCTTTACGGTATGGAGTTTCTTT
TCCTTTTTTCTGGTTGCAATCGTTCAGCTTGTTACATGAAATTTCATGGT
ATCTGTATGACCTCTTCCTTCTTGGTTCCATCTTGTCTCTCCGTTGTCAA
TTAATCATGGGACCTACCCCTGCTGACAGACTCCTTTTTGTTTGTCACGA
ACCGGCTCACTCACACAAGCAAGCATGCAGACCTTCTGAAGACGCTTCCA
TTCTTCCGGGCTGATCATCAGATTGCTTATAGAGAACAATTAGAAAGTCC
AACTACCAACGGTGATCACCCCAATCTTTCCCCACTAAGTCTTCAACTTT
AAAATACAACTGCCCTCCCGCGCACACTCCTGTTTTGCTGATGCCAGCCA
TTTCGTTTCTAATCCCGGTCACTTACTTGCTTGACTTGTTCTGTGTGGCT
TCAATTGCCTCACACTCTTCCTTTGCTTTATCGTCGTTCTCCCCCTTTCG
TTCGGTCTCTACCCGCTCACATGTCCAGCACCATTTGCATCATCATGAGC
TGCTGCCCCTTCCCCTCCGGGGCAAGTGCAGAAGACCTTACCACGGGTAC
AACTAGAGGAGGCGAAGATATCTTGAGAGTGCTGCTACTACTCCCGCCGC
TGTTCATATTTGCGAGGCTCGTGCTATTCTCCCCCCCGGCCGCAGAAGGC
GCAGCAAAGAAGACGCCCGATAGGAAGCCGAGGCTCTTGGACTTGATGAG
GCCAGGAAATGTGGTTGTTGGGGCAGCAGCAGAAGGTGAGGATGAGGATG
TGGAAGACGCAAGGTTAGGCATGGCACGTGGTTGCGCAGGACCACCTGCT
GCCGGAACAGAGGAGGAGGAGGAGGAAGAGGAGACGGAAGAGGAAGAGGA
GGAGGAGGAGGGGGATGATTTGCTTATGAAAAATTGCAAAAGCGGCGAGG
GCGGCGG
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protein sequence of jgi.p|Nanoce1779_2|578057

>mRNA_1819-protein ID=mRNA_1819-protein|Name=jgi.p|Nanoce1779_2|578057|organism=Nannochloropsis oceanica|type=polypeptide|length=151bp
MDLIRVYDVLIFMALAAAAAAATAAAAPPPAVAVKPAYCITTHCTRPSIS
FQLFERATKKEKEKLTNITSIIPLRYGVSFPFFWLQSFSLLHEISWYLYD
LFLLGSILSLRCQLIMGPTPADRLLFVCHEPAHSHKQACRPSEDASILPG
*
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mRNA from alignment at scaffold_4:90688..91844-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1819 ID=mRNA_1819|Name=jgi.p|Nanoce1779_2|578057|organism=Nannochloropsis oceanica|type=mRNA|length=1157bp|location=Sequence derived from alignment at scaffold_4:90688..91844- (Nannochloropsis oceanica)
GCTACACTGTGATGGACCTCATCCGCGTTTATGACGTGCTTATTTTCATG
GCTTTGGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCGGCACCACCACC
AGCAGTAGCTGTGAAACCAGCATATTGTATTACAACTCACTGCACACGTC
CTTCCATTTCATTTCAGTTGTTTGAGAGAGCAACGAAAAAAGAGAAGGAA
AAATTGACAAATATCACAAGTATCATCCCTTTACGGTATGGAGTTTCTTT
TCCTTTTTTCTGGTTGCAATCGTTCAGCTTGTTACATGAAATTTCATGGT
ATCTGTATGACCTCTTCCTTCTTGGTTCCATCTTGTCTCTCCGTTGTCAA
TTAATCATGGGACCTACCCCTGCTGACAGACTCCTTTTTGTTTGTCACGA
ACCGGCTCACTCACACAAGCAAGCATGCAGACCTTCTGAAGACGCTTCCA
TTCTTCCGGGCTGATCATCAGATTGCTTATAGAGAACAATTAGAAAGTCC
AACTACCAACGGTGATCACCCCAATCTTTCCCCACTAAGTCTTCAACTTT
AAAATACAACTGCCCTCCCGCGCACACTCCTGTTTTGCTGATGCCAGCCA
TTTCGTTTCTAATCCCGGTCACTTACTTGCTTGACTTGTTCTGTGTGGCT
TCAATTGCCTCACACTCTTCCTTTGCTTTATCGTCGTTCTCCCCCTTTCG
TTCGGTCTCTACCCGCTCACATGTCCAGCACCATTTGCATCATCATGAGC
TGCTGCCCCTTCCCCTCCGGGGCAAGTGCAGAAGACCTTACCACGGGTAC
AACTAGAGGAGGCGAAGATATCTTGAGAGTGCTGCTACTACTCCCGCCGC
TGTTCATATTTGCGAGGCTCGTGCTATTCTCCCCCCCGGCCGCAGAAGGC
GCAGCAAAGAAGACGCCCGATAGGAAGCCGAGGCTCTTGGACTTGATGAG
GCCAGGAAATGTGGTTGTTGGGGCAGCAGCAGAAGGTGAGGATGAGGATG
TGGAAGACGCAAGGTTAGGCATGGCACGTGGTTGCGCAGGACCACCTGCT
GCCGGAACAGAGGAGGAGGAGGAGGAAGAGGAGACGGAAGAGGAAGAGGA
GGAGGAGGAGGGGGATGATTTGCTTATGAAAAATTGCAAAAGCGGCGAGG
GCGGCGG
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Coding sequence (CDS) from alignment at scaffold_4:90688..91844-

>mRNA_1819 ID=mRNA_1819|Name=jgi.p|Nanoce1779_2|578057|organism=Nannochloropsis oceanica|type=CDS|length=453bp|location=Sequence derived from alignment at scaffold_4:90688..91844- (Nannochloropsis oceanica)
ATGGACCTCATCCGCGTTTATGACGTGCTTATTTTCATGGCTTTGGCAGC
AGCAGCAGCAGCAGCAACAGCAGCAGCGGCACCACCACCAGCAGTAGCTG
TGAAACCAGCATATTGTATTACAACTCACTGCACACGTCCTTCCATTTCA
TTTCAGTTGTTTGAGAGAGCAACGAAAAAAGAGAAGGAAAAATTGACAAA
TATCACAAGTATCATCCCTTTACGGTATGGAGTTTCTTTTCCTTTTTTCT
GGTTGCAATCGTTCAGCTTGTTACATGAAATTTCATGGTATCTGTATGAC
CTCTTCCTTCTTGGTTCCATCTTGTCTCTCCGTTGTCAATTAATCATGGG
ACCTACCCCTGCTGACAGACTCCTTTTTGTTTGTCACGAACCGGCTCACT
CACACAAGCAAGCATGCAGACCTTCTGAAGACGCTTCCATTCTTCCGGGC
TGA
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Synonyms
Publications