jgi.p|Nanoce1779_2|563509, mRNA_1818 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|563509
Unique NamemRNA_1818
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length675
Alignment locationscaffold_4:90450..91124 -

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Properties
Property NameValue
TranscriptId563595
TrackFilteredModels2
ProteinId563509
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:90450..91124 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|563509gene_1818Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1818CDS_1818Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|563509mRNA_1818-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1818 ID=mRNA_1818|Name=jgi.p|Nanoce1779_2|563509|organism=Nannochloropsis oceanica|type=mRNA|length=675bp
ATGTCCAGCACCATTTGCATCATCATGAGCTGCTGCCCCTTCCCCTCCGG
GGCAAGTGCAGAAGACCTTACCACGGGTACAACTAGAGGAGGCGAAGATA
TCTTGAGAGTGCTGCTACTACTCCCGCCGCTGTTCATATTTGCGAGGCTC
GTGCTATTCTCCCCCCCGGCCGCAGAAGGCGCAGCAAAGAAGACGCCCGA
TAGGAAGCCGAGGCTCTTGGACTTGATGAGGCCAGGAAATGTGGTTGTTG
GGGCAGCAGCAGAAGGTGAGGATGAGGATGTGGAAGACGCAAGGTTAGGC
ATGGCACGTGGTTGCGCAGGACCACCTGCTGCCGGAACAGAGGAGGAGGA
GGAGGAAGAGGAGACGGAAGAGGAAGAGGAGGAGGAGGAGGGGGATGATT
TGCTTATGAAAAATTGCAAAAGCGGCGAGGGCGGCGGAGACGGGGATGAG
GGCAGTGGCCTGTTACTCGTGCTGAGAGCACTTCTTGGATCTGCCATGGG
TCTGTGTGGTGGAGGGTTGTGTGGGATCAGACTCTACAAGTCGTATGCAA
TGAACGTTGAAACTTGGTGTTTTTGGATCGCTCTTTCGCCGGGTGAGGAG
CTGCTGTGCAGGAACAGGCAGGCAATCGGCGATGGCTTGAATGGGAACTT
GAATTCCCGCTTGATAAATAAGTGA
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protein sequence of jgi.p|Nanoce1779_2|563509

>mRNA_1818-protein ID=mRNA_1818-protein|Name=jgi.p|Nanoce1779_2|563509|organism=Nannochloropsis oceanica|type=polypeptide|length=225bp
MSSTICIIMSCCPFPSGASAEDLTTGTTRGGEDILRVLLLLPPLFIFARL
VLFSPPAAEGAAKKTPDRKPRLLDLMRPGNVVVGAAAEGEDEDVEDARLG
MARGCAGPPAAGTEEEEEEEETEEEEEEEEGDDLLMKNCKSGEGGGDGDE
GSGLLLVLRALLGSAMGLCGGGLCGIRLYKSYAMNVETWCFWIALSPGEE
LLCRNRQAIGDGLNGNLNSRLINK*
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mRNA from alignment at scaffold_4:90450..91124-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1818 ID=mRNA_1818|Name=jgi.p|Nanoce1779_2|563509|organism=Nannochloropsis oceanica|type=mRNA|length=675bp|location=Sequence derived from alignment at scaffold_4:90450..91124- (Nannochloropsis oceanica)
ATGTCCAGCACCATTTGCATCATCATGAGCTGCTGCCCCTTCCCCTCCGG
GGCAAGTGCAGAAGACCTTACCACGGGTACAACTAGAGGAGGCGAAGATA
TCTTGAGAGTGCTGCTACTACTCCCGCCGCTGTTCATATTTGCGAGGCTC
GTGCTATTCTCCCCCCCGGCCGCAGAAGGCGCAGCAAAGAAGACGCCCGA
TAGGAAGCCGAGGCTCTTGGACTTGATGAGGCCAGGAAATGTGGTTGTTG
GGGCAGCAGCAGAAGGTGAGGATGAGGATGTGGAAGACGCAAGGTTAGGC
ATGGCACGTGGTTGCGCAGGACCACCTGCTGCCGGAACAGAGGAGGAGGA
GGAGGAAGAGGAGACGGAAGAGGAAGAGGAGGAGGAGGAGGGGGATGATT
TGCTTATGAAAAATTGCAAAAGCGGCGAGGGCGGCGGAGACGGGGATGAG
GGCAGTGGCCTGTTACTCGTGCTGAGAGCACTTCTTGGATCTGCCATGGG
TCTGTGTGGTGGAGGGTTGTGTGGGATCAGACTCTACAAGTCGTATGCAA
TGAACGTTGAAACTTGGTGTTTTTGGATCGCTCTTTCGCCGGGTGAGGAG
CTGCTGTGCAGGAACAGGCAGGCAATCGGCGATGGCTTGAATGGGAACTT
GAATTCCCGCTTGATAAATAAGTGA
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Coding sequence (CDS) from alignment at scaffold_4:90450..91124-

>mRNA_1818 ID=mRNA_1818|Name=jgi.p|Nanoce1779_2|563509|organism=Nannochloropsis oceanica|type=CDS|length=675bp|location=Sequence derived from alignment at scaffold_4:90450..91124- (Nannochloropsis oceanica)
ATGTCCAGCACCATTTGCATCATCATGAGCTGCTGCCCCTTCCCCTCCGG
GGCAAGTGCAGAAGACCTTACCACGGGTACAACTAGAGGAGGCGAAGATA
TCTTGAGAGTGCTGCTACTACTCCCGCCGCTGTTCATATTTGCGAGGCTC
GTGCTATTCTCCCCCCCGGCCGCAGAAGGCGCAGCAAAGAAGACGCCCGA
TAGGAAGCCGAGGCTCTTGGACTTGATGAGGCCAGGAAATGTGGTTGTTG
GGGCAGCAGCAGAAGGTGAGGATGAGGATGTGGAAGACGCAAGGTTAGGC
ATGGCACGTGGTTGCGCAGGACCACCTGCTGCCGGAACAGAGGAGGAGGA
GGAGGAAGAGGAGACGGAAGAGGAAGAGGAGGAGGAGGAGGGGGATGATT
TGCTTATGAAAAATTGCAAAAGCGGCGAGGGCGGCGGAGACGGGGATGAG
GGCAGTGGCCTGTTACTCGTGCTGAGAGCACTTCTTGGATCTGCCATGGG
TCTGTGTGGTGGAGGGTTGTGTGGGATCAGACTCTACAAGTCGTATGCAA
TGAACGTTGAAACTTGGTGTTTTTGGATCGCTCTTTCGCCGGGTGAGGAG
CTGCTGTGCAGGAACAGGCAGGCAATCGGCGATGGCTTGAATGGGAACTT
GAATTCCCGCTTGATAAATAAGTGA
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Synonyms
Publications