Properties
| Property Name | Value |
|---|
| TranscriptId | 286042 |
| Track | FilteredModels2 |
| ProteinId | 285956 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_4 | supercontig | scaffold_4:72876..75195 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1815 ID=mRNA_1815|Name=jgi.p|Nanoce1779_2|285956|organism=Nannochloropsis oceanica|type=mRNA|length=2255bp
GTGCCGTTCTATTACAGTGGACAGACCTTTCCTAACGCCACTTCTCTACC
ACCAAACTAATAGGCCAGCGCACCATCACGATGCGACGCAACTCCTCGAC
ATCATTGGCCTCGTCCTCGCCCCCATCGTCCTCGTCGTCCTCGTCCTCGT
CCCTATCTCTAAGCCTTGCAGCTGCCGTTGCGGTTGGCGCAACTGTCGCC
ACTGCCACGCTGTACTTCTACCACCGACACCGCCACACCCCCAAACACCG
GGAAGTCTGTGCGGAAGATCGTGCCTATCTAGATGCACTCCATCACATCG
CCTTGTCGCTGGGCGTACCGAGGCTAAGAACTCCAATATCCCCACAGCAG
ATGGACGACGACGAGACCCGCTACGCCCGCCGGGATATTTTTTTCACGCA
TTTTTTTAGCAATGTTCTGGGTGGGGACCAGAAGTATTACAAATTCGTGC
ACGTGACGGGCACAAAAGGGAAAGGTACTGTGTGCGAGCTGGTCCGATGC
GGCTTGATAGCGCATGGCAAGCGCGTGGGTACATTTACCAGCCCCCATCT
TCACACTGTGAGGGAGCGAATCCGCGTCAATGACATCCTAATTTCCAAGG
CTGACTTTGTCCGTCTCTGGGCAAAGGTCCAAAAAGCGCTGGCGGGTTAC
TCGACTGAAGGAGGGGGAGGGCATTGGGCCAATTTCTTTGACAAGGTCCT
GGGGGTGGCACTCGCGTGGTTTGTGGAGCAGAGGGTGGAGTACATTATTT
TGGAGGTGGGGATAGGCGGGAGGTACGACCCGACCAACTTTATTGCCCGG
CCCGCTGTATGTGTAGTAACGAGCGTGAGCAAAGACCACACGGAAATGTT
GGGTGAGAGTTTGGAGGCGATCGCCTGGCAAAAAGCGGGAATTCTTAAGG
GGGGAGGGGACACAGTTTGCCTGACCCCCGCAACTCCTGCGCAAGATCCT
GCAGTCCTCCGAGTACTGCGAGCTGAAGCCGAAAAAGTCGGGTGTTACAT
TGAGGAGGTTATTTTAGATCCTCCCTCCTCCCCTACCCCCCCCTCTGTTT
CCTCCCCACCGTCTTCTCGGACTTCCTCCCCCCCGCCCTCGATCGCGCCC
TCGCCGCCAGCCCCCCACACCATCAGAGGGGTAGAGGTGCACCCAGAAAA
TTTTGCATTGGCCAAGGGCGTGCTTAAGACGCTGTTGCTCTCTTCGTCGA
GGGGAGGGTGGGGGGGAGGGAAAGGGAGGAGCCGGACAGTGCTGATGAGG
AGGGGGTGGGAGACAAGGGCCTTCTGGCCGGGGAGATTCGAATTGTTCCC
GCTACAGTTGGAGGGAGGCAGAGAGGGAAGAAGGACGGGAAGGAATGGGA
TAAGGTTACACAAGAGGAGACCGAGGGAGGCATTGTTGCTTTTGGACGTG
GCACATAATGTAGACAGCGTTGCCAAGCTGTTGGATGAAGTCCGACGACG
ATTCTTCCCGGGCTACCCCGCCTCTTTCTCCTCCTTCTCCTCCTCCTCTT
CATCCTCAACCACCATCCCGACTGCTAGAGTGCAGGGAGGTTGTGCCTTG
TGGGTTTTATTCGGTACAGGCAACGATAAAGACGCCAAAGGCATGCTCGA
TATCCTTCTTTCGAGCTCGTCATCCTCCTGTCCCTCTTCCCCCCCTTCCT
CCTCCACCTCCTCCTCGGGCCTCAAGCCGCTGGACCGTCTCATTTTCTGT
CAAGCCAAGCATCCCCGCGCTCGCTCCGTCGATGAACTCGCCACCTTCCT
CCCTCCTTCTCTCCTTCCCTCCCTCGACAATCCACCCATCGAGCCGAAAA
GAAGGAGGAGGACGAGAACGAAGAGAAGGAAAGGGGACGAGAGAAAGACG
GAGGTGACGATTCTTTCTCCTGCTTCTGGTGCCACGCCGGACCTGGCGCT
CGCAGAGCTGTTGGAAGACCTCGATCCAAAACGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAAGAAGACGTAGTGCTGGTGGTATGCGGGTCATTCTA
TGTGGTGAGTGCCGCGAGGGCCTACCTGGCACAGCACCGGCCGGGAATGC
TGCGGGAGACAGATTGGGCCTTTGAGGCTGACCCGCCTTTATACACGTAG
ATTGCTATTGAATTACTGTATGAAAAAATTCACAGTAAAACCAGTTAGCG
AGAATAGACAGCTATTGAAAAGGACTAACAGTGATGTAGGTGGGGTTAAC
GGAAGCATGAGGTATTACCGCATGAACTACAAAAGCCAAGCAAATTACAG
GAACA back to topprotein sequence of jgi.p|Nanoce1779_2|285956 >mRNA_1815-protein ID=mRNA_1815-protein|Name=jgi.p|Nanoce1779_2|285956|organism=Nannochloropsis oceanica|type=polypeptide|length=665bp
MRRNSSTSLASSSPPSSSSSSSSSLSLSLAAAVAVGATVATATLYFYHRH
RHTPKHREVCAEDRAYLDALHHIALSLGVPRLRTPISPQQMDDDETRYAR
RDIFFTHFFSNVLGGDQKYYKFVHVTGTKGKGTVCELVRCGLIAHGKRVG
TFTSPHLHTVRERIRVNDILISKADFVRLWAKVQKALAGYSTEGGGGHWA
NFFDKVLGVALAWFVEQRVEYIILEVGIGGRYDPTNFIARPAVCVVTSVS
KDHTEMLGESLEAIAWQKAGILKGGGDTVCLTPATPAQDPAVLRVLRAEA
EKVGCYIEEVILDPPSSPTPPSVSSPPSSRTSSPPPSIAPSPPAPHTIRG
VEVHPENFALAKGVLKTLLLSSSRGGWGGGKGRSRTVLMRRGWETRAFWP
GRFELFPLQLEGGREGRRTGRNGIRLHKRRPREALLLLDVAHNVDSVAKL
LDEVRRRFFPGYPASFSSFSSSSSSSTTIPTARVQGGCALWVLFGTGNDK
DAKGMLDILLSSSSSSCPSSPPSSSTSSSGLKPLDRLIFCQAKHPRARSV
DELATFLPPSLLPSLDNPPIEPKRRRRTRTKRRKGDERKTEVTILSPASG
ATPDLALAELLEDLDPKRGGGGGGGGGGRRRSAGGMRVILCGECREGLPG
TAPAGNAAGDRLGL* back to topmRNA from alignment at scaffold_4:72876..75195- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1815 ID=mRNA_1815|Name=jgi.p|Nanoce1779_2|285956|organism=Nannochloropsis oceanica|type=mRNA|length=2320bp|location=Sequence derived from alignment at scaffold_4:72876..75195- (Nannochloropsis oceanica)
GTGCCGTTCTATTACAGTGGACAGACCTTTCCTAACGCCACTTCTCTACC
ACCAAACTAATAGGCCAGCGCACCATCACGATGCGACGCAACTCCTCGAC
ATCATTGGCCTCGTCCTCGCCCCCATCGTCCTCGTCGTCCTCGTCCTCGT
CCCTATCTCTAAGCCTTGCAGCTGCCGTTGCGGTTGGCGCAACTGTCGCC
ACTGCCACGCTGTACTTCTACCACCGACACCGCCACACCCCCAAACACCG
GGAAGTCTGTGCGGAAGATCGTGCCTATCTAGATGCACTCCATCACATCG
CCTTGTCGCTGGGCGTACCGAGGCTAAGAACTCCAATATCCCCACAGCAG
ATGGACGACGACGAGACCCGCTACGCCCGCCGGGATATTTTTTTCACGCA
TTTTTTTAGCAATGTTCTGGGTGGGGACCAGAAGTATTACAAATTCGTGC
ACGTGACGGGCACAAAAGGGAAAGGTACTGTGTGCGAGCTGGTCCGATGC
GGCTTGATAGCGCATGGCAAGCGCGTGGGTACATTTACCAGCCCCCATCT
TCACACTGTGAGGGAGCGAATCCGCGTCAATGACATCCTAATTTCCAAGG
CTGACTTTGTCCGTCTCTGGGCAAAGGTCCAAAAAGCGCTGGCGGGTTAC
TCGACTGAAGGAGGGGGAGGGCATTGGGCCAATTTCTTTGACAAGGTCCT
GGGGGTGGCACTCGCGTGGTTTGTGGAGCAGAGGGTGGAGTACATTATTT
TGGAGGTGGGGATAGGCGGGAGGTACGACCCGACCAACTTTATTGCCCGG
CCCGCTGTATGTGTAGTAACGAGCGTGAGCAAAGACCACACGGAAATGTT
GGGTGAGAGTTTGGAGGCGATCGCCTGGCAAAAAGCGGGAATTCTTAAGG
GGGGAGGGGACACAGTTTGCCTGACCCCCGCAACTCCTGCGCAAGATCCT
GCAGTCCTCCGAGTACTGCGAGCTGAAGCCGAAAAAGTCGGGTGTTACAT
TGAGGAGGTTATTTTAGATCCTCCCTCCTCCCCTACCCCCCCCTCTGTTT
CCTCCCCACCGTCTTCTCGGACTTCCTCCCCCCCGCCCTCGATCGCGCCC
TCGCCGCCAGCCCCCCACACCATCAGAGGGGTAGAGGTGCACCCAGAAAA
TTTTGCATTGGCCAAGGGCGTGCTTAAGACGCTGTTGCTCTCTTCGTCGA
GGGGAGGGTGGGGGGGAGGGAAAGGGAGGAGCCGGACAGTGCTGATGAGG
AGGGGGTGGGAGACAAGGGCCTTCTGGCCGGGGAGATTCGAATTGTTCCC
GCTACAGTTGGAGGGAGGCAGAGAGGGAAGAAGGACGGGAAGGAATGGGA
TAAGGTTACACAAGAGGAGACCGAGGGAGGCATTGTTGCTTTTGGACGTG
GCACATAATGTAGACAGCGTTGCCAAGCTGTTGGATGAAGTCCGACGACG
ATTCTTCCCGGGCTACCCCGCCTCTTTCTCCTCCTTCTCCTCCTCCTCTT
CATCCTCAACCACCATCCCGACTGCTAGAGTGCAGGGAGGTTGTGCCTTG
TGGGTTTTATTCGGTACAGGCAACGATAAAGACGCCAAAGGCATGCTCGA
TATCCTTCTTTCGAGCTCGTCATCCTCCTGTCCCTCTTCCCCCCCTTCCT
CCTCCACCTCCTCCTCGGGCCTCAAGCCGCTGGACCGTCTCATTTTCTGT
CAAGCCAAGCATCCCCGCGCTCGCTCCGTCGATGAACTCGCCACCTTCCT
CCCTCCTTCTCTCCTTCCCTCCCTCGACAATCCACCCATCGAGCCGAAAA
GAAGGAGGAGGACGAGAACGAAGAGAAGGAAAGGGGACGAGAGAAAGACG
GAGGTGACGATTCTTTCTCCTGCTTCTGGTGCCACGCCGGACCTGGCGCT
CGCAGAGCTGTTGGAAGACCTCGATCCAAAACCGGAGGAGGAGGAGGAAA
ATGAGGAGGGAAAGGGGGAACAAGGGGAAAAAATGGTATTTGTGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGACGTAGTGCTGGTGGT
ATGCGGGTCATTCTATGTGGTGAGTGCCGCGAGGGCCTACCTGGCACAGC
ACCGGCCGGGAATGCTGCGGGAGACAGATTGGGCCTTTGAGGCTGACCCG
CCTTTATACACGTAGATTGCTATTGAATTACTGTATGAAAAAATTCACAG
TAAAACCAGTTAGCGAGAATAGACAGCTATTGAAAAGGACTAACAGTGAT
GTAGGTGGGGTTAACGGAAGCATGAGGTATTACCGCATGAACTACAAAAG
CCAAGCAAATTACAGGAACA back to topCoding sequence (CDS) from alignment at scaffold_4:72876..75195- >mRNA_1815 ID=mRNA_1815|Name=jgi.p|Nanoce1779_2|285956|organism=Nannochloropsis oceanica|type=CDS|length=3990bp|location=Sequence derived from alignment at scaffold_4:72876..75195- (Nannochloropsis oceanica)
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGACGTAGTGCTGGT
GGTATGCGGGTCATTCTATGTGGTGAGTGCCGCGAGGGCCTACCTGGCAC
AGCACCGGCCGGGAATGCTGCGGGAGACAGATTGGGCCTTTGAATGCGAC
GCAACTCCTCGACATCATTGGCCTCGTCCTCGCCCCCATCGTCCTCGTCG
TCCTCGTCCTCGTCCCTATCTCTAAGCCTTGCAGCTGCCGTTGCGGTTGG
CGCAACTGTCGCCACTGCCACGCTGTACTTCTACCACCGACACCGCCACA
CCCCCAAACACCGGGAAGTCTGTGCGGAAGATCGTGCCTATCTAGATGCA
CTCCATCACATCGCCTTGTCGCTGGGCGTACCGAGGCTAAGAACTCCAAT
ATCCCCACAGCAGATGGACGACGACGAGACCCGCTACGCCCGCCGGGATA
TTTTTTTCACGCATTTTTTTAGCAATGTTCTGGGTGGGGACCAGAAGTAT
TACAAATTCGTGCACGTGACGGGCACAAAAGGGAAAGGTACTGTGTGCGA
GCTGGTCCGATGCGGCTTGATAGCGCATGGCAAGCGCGTGGGTACATTTA
CCAGCCCCCATCTTCACACTGTGAGGGAGCGAATCCGCGTCAATGACATC
CTAATTTCCAAGGCTGACTTTGTCCGTCTCTGGGCAAAGGTCCAAAAAGC
GCTGGCGGGTTACTCGACTGAAGGAGGGGGAGGGCATTGGGCCAATTTCT
TTGACAAGGTCCTGGGGGTGGCACTCGCGTGGTTTGTGGAGCAGAGGGTG
GAGTACATTATTTTGGAGGTGGGGATAGGCGGGAGGTACGACCCGACCAA
CTTTATTGCCCGGCCCGCTGTATGTGTAGTAACGAGCGTGAGCAAAGACC
ACACGGAAATGTTGGGTGAGAGTTTGGAGGCGATCGCCTGGCAAAAAGCG
GGAATTCTTAAGGGGGGAGGGGACACAGTTTGCCTGACCCCCGCAACTCC
TGCGCAAGATCCTGCAGTCCTCCGAGTACTGCGAGCTGAAGCCGAAAAAG
TCGGGTGTTACATTGAGGAGGTTATTTTAGATCCTCCCTCCTCCCCTACC
CCCCCCTCTGTTTCCTCCCCACCGTCTTCTCGGACTTCCTCCCCCCCGCC
CTCGATCGCGCCCTCGCCGCCAGCCCCCCACACCATCAGAGGGGTAGAGG
TGCACCCAGAAAATTTTGCATTGGCCAAGGGCGTGCTTAAGACGCTGTTG
CTCTCTTCGTCGAGGGGAGGGTGGGGGGGAGGGAAAGGGAGGAGCCGGAC
AGTGCTGATGAGGAGGGGGTGGGAGACAAGGGCCTTCTGGCCGGGGAGAT
TCGAATTGTTCCCGCTACAGTTGGAGGGAGGCAGAGAGGGAAGAAGGACG
GGAAGGAATGGGATAAGGTTACACAAGAGGAGACCGAGGGAGGCATTGTT
GCTTTTGGACGTGGCACATAATGTAGACAGCGTTGCCAAGCTGTTGGATG
AAGTCCGACGACGATTCTTCCCGGGCTACCCCGCCTCTTTCTCCTCCTTC
TCCTCCTCCTCTTCATCCTCAACCACCATCCCGACTGCTAGAGTGCAGGG
AGGTTGTGCCTTGTGGGTTTTATTCGGTACAGGCAACGATAAAGACGCCA
AAGGCATGCTCGATATCCTTCTTTCGAGCTCGTCATCCTCCTGTCCCTCT
TCCCCCCCTTCCTCCTCCACCTCCTCCTCGGGCCTCAAGCCGCTGGACCG
TCTCATTTTCTGTCAAGCCAAGCATCCCCGCGCTCGCTCCGTCGATGAAC
TCGCCACCTTCCTCCCTCCTTCTCTCCTTCCCTCCCTCGACAATCCACCC
ATCGAGCCGAAAAGAAGGAGGAGGACGAGAACGAAGAGAAGGAAAGGGGA
CGAGAGAAAGACGGAGGTGACGATTCTTTCTCCTGCTTCTGGTGCCACGC
CGGACCTGGCGCTCGCAGAGCTGTTGGAAGACCTCGATCCAAAACGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGACGTAGTGCTGGTGGTAT
GCGGGTCATTCTATGTGGTGAGTGCCGCGAGGGCCTACCTGGCACAGCAC
CGGCCGGGAATGCTGCGGGAGACAGATTGGGCCTTTGAATGCGACGCAAC
TCCTCGACATCATTGGCCTCGTCCTCGCCCCCATCGTCCTCGTCGTCCTC
GTCCTCGTCCCTATCTCTAAGCCTTGCAGCTGCCGTTGCGGTTGGCGCAA
CTGTCGCCACTGCCACGCTGTACTTCTACCACCGACACCGCCACACCCCC
AAACACCGGGAAGTCTGTGCGGAAGATCGTGCCTATCTAGATGCACTCCA
TCACATCGCCTTGTCGCTGGGCGTACCGAGGCTAAGAACTCCAATATCCC
CACAGCAGATGGACGACGACGAGACCCGCTACGCCCGCCGGGATATTTTT
TTCACGCATTTTTTTAGCAATGTTCTGGGTGGGGACCAGAAGTATTACAA
ATTCGTGCACGTGACGGGCACAAAAGGGAAAGGTACTGTGTGCGAGCTGG
TCCGATGCGGCTTGATAGCGCATGGCAAGCGCGTGGGTACATTTACCAGC
CCCCATCTTCACACTGTGAGGGAGCGAATCCGCGTCAATGACATCCTAAT
TTCCAAGGCTGACTTTGTCCGTCTCTGGGCAAAGGTCCAAAAAGCGCTGG
CGGGTTACTCGACTGAAGGAGGGGGAGGGCATTGGGCCAATTTCTTTGAC
AAGGTCCTGGGGGTGGCACTCGCGTGGTTTGTGGAGCAGAGGGTGGAGTA
CATTATTTTGGAGGTGGGGATAGGCGGGAGGTACGACCCGACCAACTTTA
TTGCCCGGCCCGCTGTATGTGTAGTAACGAGCGTGAGCAAAGACCACACG
GAAATGTTGGGTGAGAGTTTGGAGGCGATCGCCTGGCAAAAAGCGGGAAT
TCTTAAGGGGGGAGGGGACACAGTTTGCCTGACCCCCGCAACTCCTGCGC
AAGATCCTGCAGTCCTCCGAGTACTGCGAGCTGAAGCCGAAAAAGTCGGG
TGTTACATTGAGGAGGTTATTTTAGATCCTCCCTCCTCCCCTACCCCCCC
CTCTGTTTCCTCCCCACCGTCTTCTCGGACTTCCTCCCCCCCGCCCTCGA
TCGCGCCCTCGCCGCCAGCCCCCCACACCATCAGAGGGGTAGAGGTGCAC
CCAGAAAATTTTGCATTGGCCAAGGGCGTGCTTAAGACGCTGTTGCTCTC
TTCGTCGAGGGGAGGGTGGGGGGGAGGGAAAGGGAGGAGCCGGACAGTGC
TGATGAGGAGGGGGTGGGAGACAAGGGCCTTCTGGCCGGGGAGATTCGAA
TTGTTCCCGCTACAGTTGGAGGGAGGCAGAGAGGGAAGAAGGACGGGAAG
GAATGGGATAAGGTTACACAAGAGGAGACCGAGGGAGGCATTGTTGCTTT
TGGACGTGGCACATAATGTAGACAGCGTTGCCAAGCTGTTGGATGAAGTC
CGACGACGATTCTTCCCGGGCTACCCCGCCTCTTTCTCCTCCTTCTCCTC
CTCCTCTTCATCCTCAACCACCATCCCGACTGCTAGAGTGCAGGGAGGTT
GTGCCTTGTGGGTTTTATTCGGTACAGGCAACGATAAAGACGCCAAAGGC
ATGCTCGATATCCTTCTTTCGAGCTCGTCATCCTCCTGTCCCTCTTCCCC
CCCTTCCTCCTCCACCTCCTCCTCGGGCCTCAAGCCGCTGGACCGTCTCA
TTTTCTGTCAAGCCAAGCATCCCCGCGCTCGCTCCGTCGATGAACTCGCC
ACCTTCCTCCCTCCTTCTCTCCTTCCCTCCCTCGACAATCCACCCATCGA
GCCGAAAAGAAGGAGGAGGACGAGAACGAAGAGAAGGAAAGGGGACGAGA
GAAAGACGGAGGTGACGATTCTTTCTCCTGCTTCTGGTGCCACGCCGGAC
CTGGCGCTCGCAGAGCTGTTGGAAGACCTCGATCCAAAAC back to top
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