jgi.p|Nanoce1779_2|578016, mRNA_1814 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578016
Unique NamemRNA_1814
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1105
Alignment locationscaffold_4:71553..72860 +

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Properties
Property NameValue
TranscriptId578102
TrackFilteredModels2
ProteinId578016
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:71553..72860 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578016gene_1814Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578016mRNA_1814-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1814CDS_1814Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1814 ID=mRNA_1814|Name=jgi.p|Nanoce1779_2|578016|organism=Nannochloropsis oceanica|type=mRNA|length=1105bp
ACAGGCACAAACACACGCGCAGGAAGCAACTTACCAAGCCAAAATTCCCC
TCGGCTTTTTGAAGCCATTATCAAAATCATCACCTCTCTCTCCCTCCATC
CTTGCCGGCCCACTGCTACTGCCACAATAACCACGCCACTACTCCCAAGA
GCAACATCAGCAAGAGAACTCCATCGCACACTTTAAAGCCCAGCTTCGCT
ATGACATCCGTTGCAGAGCTACTGCCCAAGACCAAGAAGCTGGCCTTTGA
ACTCCAAAGCCAAGTCCGACAGGTGGAACTGGGCTATGTCTCGCCCGACA
ACGTATTTATGGGTCTGAGCGAACTCGAACGGCAGATCGGCATCCTTAAC
ACGCTTGTTGGTCAAGAACGGCCAGGGGCGCGGGAACAGTGGAGGAGGAA
AATAAGCGAGTTGGGAAATGAGGCCATGTTCCTAAGGACGGTCTTAGATC
GATTTTTGCAGTCAAGGGGAAGGATAGTACAGGAGGCGAAGGAGAGGGAG
GATTTGCTGGCGAGGCGGTATGAGAAGGGGCAGGATGGGGAGACGCCGAC
GATTTTCATGGATCAATTGATGGAGGAAGGAGCAAGTTATCAGCGGAGTG
GGGTGATGATGAATGACATACTCATGTCGGGGCAGGCGACGCTTTCGAAC
CTTCTAGATCAACGGAGTTCCCTGAAAAGCGCGCGGAAGAAGGTGTTGGA
CATATTAAGCCTGCTTGGGATGAGCAGTCGGATCATGGGGATGGCGGAGA
GGAGGGATGCGGTGGATAAAGTGATCGTCGGGGGGGGGATGTGTCTGACG
TTGGTGGTGCTATGGGTCTGCTGGAAGGCCGTGTCATGAGACAGTCATCG
GGTATAAATTGGGCCCAAAATTAAGAATGTAAAACTAGGCTGTGAAGTAG
TTGGTTGTTTTTTTTAATGTGCCGTGTTGCTTACTCTTATCGTGGGGGGT
TGTGCGGGGACGTAACGGCTTGGATCGTGCGGCAGGGTTGGCCGTTAGAC
CGCCTCGTGAAGAGGAGGGAACGATGAGGAAGAGAGAGAGCACGGAACGC
ATTTTTTGCGCATGACTCCTTAACAAAACGAAAAAACAATAATTTTGAAA
ATGTC
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protein sequence of jgi.p|Nanoce1779_2|578016

>mRNA_1814-protein ID=mRNA_1814-protein|Name=jgi.p|Nanoce1779_2|578016|organism=Nannochloropsis oceanica|type=polypeptide|length=213bp
MTSVAELLPKTKKLAFELQSQVRQVELGYVSPDNVFMGLSELERQIGILN
TLVGQERPGAREQWRRKISELGNEAMFLRTVLDRFLQSRGRIVQEAKERE
DLLARRYEKGQDGETPTIFMDQLMEEGASYQRSGVMMNDILMSGQATLSN
LLDQRSSLKSARKKVLDILSLLGMSSRIMGMAERRDAVDKVIVGGGMCLT
LVVLWVCWKAVS*
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mRNA from alignment at scaffold_4:71553..72860+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1814 ID=mRNA_1814|Name=jgi.p|Nanoce1779_2|578016|organism=Nannochloropsis oceanica|type=mRNA|length=1308bp|location=Sequence derived from alignment at scaffold_4:71553..72860+ (Nannochloropsis oceanica)
ACAGGCACAAACACACGCGCAGGAAGCAACTTACCAAGCCAAAATTCCCC
TCGGCTTTTTGAAGCCATTATCAAAATCATCACCTCTCTCTCCCTCCATC
CTTGCCGGCCCACTGCTACTGCCACAATAACCACGCCACTACTCCCAAGA
GCAACATCAGCAAGAGAACTCCATCGCACACTTTAAAGCCCAGCTTCGCT
ATGACATCCGTTGCAGAGCTACTGCCCAAGACCAAGAAGCTGGCCTTTGA
ACTCCAAAGCCAAGTCCGACAGGTATTTTATGCGCCTTGTGCACGGCATG
CCCTCTCCTTCCCGCCCTCCTTTCCTCTGCGCCTCAGAAGGTTGACCTGC
CATCCGTGCCCACTAAATGCTTGTCTGCCTGGGATTGGCTTCAGCCTGAA
GCGTCCTGTCATCCCTAACTCGCTCCCTTCCGCCTTCTCCTAATTATCCC
CCCTCCCTCCCTCTCCCACCCACAGGTGGAACTGGGCTATGTCTCGCCCG
ACAACGTATTTATGGGTCTGAGCGAACTCGAACGGCAGATCGGCATCCTT
AACACGCTTGTTGGTCAAGAACGGCCAGGGGCGCGGGAACAGTGGAGGAG
GAAAATAAGCGAGTTGGGAAATGAGGCCATGTTCCTAAGGACGGTCTTAG
ATCGATTTTTGCAGTCAAGGGGAAGGATAGTACAGGAGGCGAAGGAGAGG
GAGGATTTGCTGGCGAGGCGGTATGAGAAGGGGCAGGATGGGGAGACGCC
GACGATTTTCATGGATCAATTGATGGAGGAAGGAGCAAGTTATCAGCGGA
GTGGGGTGATGATGAATGACATACTCATGTCGGGGCAGGCGACGCTTTCG
AACCTTCTAGATCAACGGAGTTCCCTGAAAAGCGCGCGGAAGAAGGTGTT
GGACATATTAAGCCTGCTTGGGATGAGCAGTCGGATCATGGGGATGGCGG
AGAGGAGGGATGCGGTGGATAAAGTGATCGTCGGGGGGGGGATGTGTCTG
ACGTTGGTGGTGCTATGGGTCTGCTGGAAGGCCGTGTCATGAGACAGTCA
TCGGGTATAAATTGGGCCCAAAATTAAGAATGTAAAACTAGGCTGTGAAG
TAGTTGGTTGTTTTTTTTAATGTGCCGTGTTGCTTACTCTTATCGTGGGG
GGTTGTGCGGGGACGTAACGGCTTGGATCGTGCGGCAGGGTTGGCCGTTA
GACCGCCTCGTGAAGAGGAGGGAACGATGAGGAAGAGAGAGAGCACGGAA
CGCATTTTTTGCGCATGACTCCTTAACAAAACGAAAAAACAATAATTTTG
AAAATGTC
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Coding sequence (CDS) from alignment at scaffold_4:71553..72860+

>mRNA_1814 ID=mRNA_1814|Name=jgi.p|Nanoce1779_2|578016|organism=Nannochloropsis oceanica|type=CDS|length=1278bp|location=Sequence derived from alignment at scaffold_4:71553..72860+ (Nannochloropsis oceanica)
ATGACATCCGTTGCAGAGCTACTGCCCAAGACCAAGAAGCTGGCCTTTGA
ACTCCAAAGCCAAGTCCGACAGGTGGAACTGGGCTATGTCTCGCCCGACA
ACGTATTTATGGGTCTGAGCGAACTCGAACGGCAGATCGGCATCCTTAAC
ACGCTTGTTGGTCAAGAACGGCCAGGGGCGCGGGAACAGTGGAGGAGGAA
AATAAGCGAGTTGGGAAATGAGGCCATGTTCCTAAGGACGGTCTTAGATC
GATTTTTGCAGTCAAGGGGAAGGATAGTACAGGAGGCGAAGGAGAGGGAG
GATTTGCTGGCGAGGCGGTATGAGAAGGGGCAGGATGGGGAGACGCCGAC
GATTTTCATGGATCAATTGATGGAGGAAGGAGCAAGTTATCAGCGGAGTG
GGGTGATGATGAATGACATACTCATGTCGGGGCAGGCGACGCTTTCGAAC
CTTCTAGATCAACGGAGTTCCCTGAAAAGCGCGCGGAAGAAGGTGTTGGA
CATATTAAGCCTGCTTGGGATGAGCAGTCGGATCATGGGGATGGCGGAGA
GGAGGGATGCGGTGGATAAAGTGATCGTCGGGGGGGGGATGTGTCTGACG
TTGGTGGTGCTATGGGTCTGCTGGAAGGCCGTGTCATGAATGACATCCGT
TGCAGAGCTACTGCCCAAGACCAAGAAGCTGGCCTTTGAACTCCAAAGCC
AAGTCCGACAGGTGGAACTGGGCTATGTCTCGCCCGACAACGTATTTATG
GGTCTGAGCGAACTCGAACGGCAGATCGGCATCCTTAACACGCTTGTTGG
TCAAGAACGGCCAGGGGCGCGGGAACAGTGGAGGAGGAAAATAAGCGAGT
TGGGAAATGAGGCCATGTTCCTAAGGACGGTCTTAGATCGATTTTTGCAG
TCAAGGGGAAGGATAGTACAGGAGGCGAAGGAGAGGGAGGATTTGCTGGC
GAGGCGGTATGAGAAGGGGCAGGATGGGGAGACGCCGACGATTTTCATGG
ATCAATTGATGGAGGAAGGAGCAAGTTATCAGCGGAGTGGGGTGATGATG
AATGACATACTCATGTCGGGGCAGGCGACGCTTTCGAACCTTCTAGATCA
ACGGAGTTCCCTGAAAAGCGCGCGGAAGAAGGTGTTGGACATATTAAGCC
TGCTTGGGATGAGCAGTCGGATCATGGGGATGGCGGAGAGGAGGGATGCG
GTGGATAAAGTGATCGTCGGGGGGGGGATGTGTCTGACGTTGGTGGTGCT
ATGGGTCTGCTGGAAGGCCGTGTCATGA
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Synonyms
Publications