jgi.p|Nanoce1779_2|285717, mRNA_1809 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|285717
Unique Name	mRNA_1809
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2227
Alignment location	scaffold_4:55751..57977 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	285803
Track	FilteredModels2
ProteinId	285717

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:55751..57977 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|285717	gene_1809	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|285717	mRNA_1809-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1809	CDS_1809	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:55751..57977+
coding sequence from alignment at scaffold_4:55751..57977+

mRNA sequence

>mRNA_1809 ID=mRNA_1809|Name=jgi.p|Nanoce1779_2|285717|organism=Nannochloropsis oceanica|type=mRNA|length=2227bp
GAGCAAAGCACCTCACTTGTCCAATCTATCGGCCCGCCTCATCGGCACTA
GCAGTAGTAGTGGTGATGGTCAAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGGAGAGGAAAGGGAGAAGCGGCAGGGATGGCACTGCATCCTTGTAT
TGGCTTCCTGGAGAGTACTCAGAGAGCGAGGGGAGGCCTCGAAGGGGCGT
TGGGTGGGCAGGACATGAGGGGAGGGAGGGAGGAAGGAGGGGGGCGACGG
ACAGGGGAGTGGAGTCTTACGGCTGGATCAGGAGGAGGAGGAGGAGGAGG
AGGAGGGCGTGGTGGGGGGCACCCGCTCCCACCCGCATCTTGGTCTGCAG
CCTCAGCCGCCGAGTCGTGGACGCTCGAGCCCTCTTCTGCCCCCGAGCCT
TCTTCCTCCTTCTCCTCCTCAGCCCCTCTTTTACCTTCGATGAAGCTGCA
ACCTGTGGCAGTGGCGAAGGCGAAGCAGGTCGAGGAGGAAGAAGAGGAGG
GCTCGAGCCTCTACCCCTCCTCCTTCTCTGAAGATTGGTACGTCAGCCTC
GTTGGGGTTGAAGGGCCACCGGCTGCTCCTTCCTCCTCCTCCTCGTCCTC
TTCCTCCTTGCTTCGACAGACCCCTCTCGCCGCTCCAGGCCCTTCAGGAG
GTAGTCTTGGATGGGGACAGCAGCAGCAGCCGCCGCCGCCGCCGCCGCAG
CAGCAGCAGCAGCAGGGGGCACTTGGCAATAGGACGGGGACTGGTCCTGT
CCCTCCTCCTCATCTTCACGCCCGTCTTGGCGGTGCTGGAGAAGGGCGAG
GCGCCATGAGCAACAGCAGCAGTAAAAGAAGCAGCAGCAGCAGCAGCAAT
AGCGTAGGCACGGGAGGTCAGGGAGCAAGCACTTGGGGCCTGCCCGGCAT
GCTTATCCAGCCTCCATCCCCCCCCCCCTCCCTTCCTCCTTCGACACCAT
CTCACAAGCAACACCCCAAGCCCCGCCTCCCTCCTTCGATGCATTCAGCA
TCCTCCCCCCTTCCCTCATCCTCCTCGTCTTCCTCTGCCACAGCGGCCCA
GCTGTGGGGGCTGCCAGCTTCCTCTGCCTCTCTGATCTCATCCCCTTCCT
CCGCATTCCATGTGACTGACACGGGTGGAGAGGAGGGTAGGGCAATGGCA
TCGTCATTTTTGACTCATTTGGATAAACAAGGGAAAGAAGAGGTGGGTGG
AGAAAGAGGACTGAGACGAGGAGGAGGGGGAGGACGAGGTGCAGGACGGG
GAAGGTCTGGGGTGCGAGGTGCGAGAAGAGGAGGGGGAAAGGCAGGAAGA
GGTGGAGGAGGGGAAAAAGGGAGCATCCAGCCGAGGGGAACCAAGATGTA
CCAGCCGGTGCCGCAGCAGAAGCAGCAGCAGCAGCAACAACAGCAGGAGC
AACAGCAAGAGCAAGATGGAAGAGCGGCAGTGAATGGCGGTGAAGGAGAA
GGGGGAGGAGGAAGAGGCGGTGTGGAGAAGGGAAGGCAGACCCTTCCTGC
TGGCCAAGGGGAATATAAGAAAAGTAGTACTGCGAGACGTGGAGCTGCCA
AGCAGCAGCAGCTGCAGCAGCAACCACAACAACCACAACAACCACAACCA
CAACAACCAACACGGCAATTGCGTCAGAGTCAGCAACAACAGCAGCAGCA
GCAGCAGGAGCAACTGCAACGGCAAGTTGGAAGAGCGACAGTGGATGCGG
CAGTGAATGGCGGTAAAGGAGAAGGGGGAGGAGGAAGAGGCGGTGTGGAG
AAGGGAAGGCAGACCCTTCCTGCTGGCCAAGGGAAAAATAAGAAAAGTAG
TACTGCGAGACGTGGAGCTGCCAAGCAGCAGCAGCCTCAGTCACAGCAGC
ATCACAAGCAACAGTATCGTGTCGCAGCAGCAGCAGCAGCAGCAGCAGCA
ACAACAACAACAGCAACAGCAGCAGCACTTAGAACAGCAGCAGCGCGGAT
CAGCCCCAAAGACAAGGGAGACAGGTGAAGAGGTTAGGAGGCAGCATCAA
CCGACATAGATGTCCACAAAGAAAAAGACAGACACAACTAGTGTGTGTGT
GCCATAGCCCCTAGCCCCATAAAAGACAGCAAACTAACTAACTAGCCAGT
TTATAGACATGAAATTTCGGAATCTCCTGGGGGAGGGAAAAGGGAGTGGG
AGCAAGCATTTGTCTTGGCTTCTCTTTCCCATCGTTTCCTCGTCCAGTCT
TTATCTTCTAGAATTTTCTAGAACGCT

protein sequence of jgi.p|Nanoce1779_2|285717

>mRNA_1809-protein ID=mRNA_1809-protein|Name=jgi.p|Nanoce1779_2|285717|organism=Nannochloropsis oceanica|type=polypeptide|length=616bp
MALHPCIGFLESTQRARGGLEGALGGQDMRGGREEGGGRRTGEWSLTAGS
GGGGGGGGGRGGGHPLPPASWSAASAAESWTLEPSSAPEPSSSFSSSAPL
LPSMKLQPVAVAKAKQVEEEEEEGSSLYPSSFSEDWYVSLVGVEGPPAAP
SSSSSSSSSLLRQTPLAAPGPSGGSLGWGQQQQPPPPPPQQQQQQGALGN
RTGTGPVPPPHLHARLGGAGEGRGAMSNSSSKRSSSSSSNSVGTGGQGAS
TWGLPGMLIQPPSPPPSLPPSTPSHKQHPKPRLPPSMHSASSPLPSSSSS
SSATAAQLWGLPASSASLISSPSSAFHVTDTGGEEGRAMASSFLTHLDKQ
GKEEVGGERGLRRGGGGGRGAGRGRSGVRGARRGGGKAGRGGGGEKGSIQ
PRGTKMYQPVPQQKQQQQQQQQEQQQEQDGRAAVNGGEGEGGGGRGGVEK
GRQTLPAGQGEYKKSSTARRGAAKQQQLQQQPQQPQQPQPQQPTRQLRQS
QQQQQQQQQEQLQRQVGRATVDAAVNGGKGEGGGGRGGVEKGRQTLPAGQ
GKNKKSSTARRGAAKQQQPQSQQHHKQQYRVAAAAAAAAATTTTATAAAL
RTAAARISPKDKGDR*

mRNA from alignment at scaffold_4:55751..57977+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1809 ID=mRNA_1809|Name=jgi.p|Nanoce1779_2|285717|organism=Nannochloropsis oceanica|type=mRNA|length=2227bp|location=Sequence derived from alignment at scaffold_4:55751..57977+ (Nannochloropsis oceanica)
GAGCAAAGCACCTCACTTGTCCAATCTATCGGCCCGCCTCATCGGCACTA
GCAGTAGTAGTGGTGATGGTCAAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGGAGAGGAAAGGGAGAAGCGGCAGGGATGGCACTGCATCCTTGTAT
TGGCTTCCTGGAGAGTACTCAGAGAGCGAGGGGAGGCCTCGAAGGGGCGT
TGGGTGGGCAGGACATGAGGGGAGGGAGGGAGGAAGGAGGGGGGCGACGG
ACAGGGGAGTGGAGTCTTACGGCTGGATCAGGAGGAGGAGGAGGAGGAGG
AGGAGGGCGTGGTGGGGGGCACCCGCTCCCACCCGCATCTTGGTCTGCAG
CCTCAGCCGCCGAGTCGTGGACGCTCGAGCCCTCTTCTGCCCCCGAGCCT
TCTTCCTCCTTCTCCTCCTCAGCCCCTCTTTTACCTTCGATGAAGCTGCA
ACCTGTGGCAGTGGCGAAGGCGAAGCAGGTCGAGGAGGAAGAAGAGGAGG
GCTCGAGCCTCTACCCCTCCTCCTTCTCTGAAGATTGGTACGTCAGCCTC
GTTGGGGTTGAAGGGCCACCGGCTGCTCCTTCCTCCTCCTCCTCGTCCTC
TTCCTCCTTGCTTCGACAGACCCCTCTCGCCGCTCCAGGCCCTTCAGGAG
GTAGTCTTGGATGGGGACAGCAGCAGCAGCCGCCGCCGCCGCCGCCGCAG
CAGCAGCAGCAGCAGGGGGCACTTGGCAATAGGACGGGGACTGGTCCTGT
CCCTCCTCCTCATCTTCACGCCCGTCTTGGCGGTGCTGGAGAAGGGCGAG
GCGCCATGAGCAACAGCAGCAGTAAAAGAAGCAGCAGCAGCAGCAGCAAT
AGCGTAGGCACGGGAGGTCAGGGAGCAAGCACTTGGGGCCTGCCCGGCAT
GCTTATCCAGCCTCCATCCCCCCCCCCCTCCCTTCCTCCTTCGACACCAT
CTCACAAGCAACACCCCAAGCCCCGCCTCCCTCCTTCGATGCATTCAGCA
TCCTCCCCCCTTCCCTCATCCTCCTCGTCTTCCTCTGCCACAGCGGCCCA
GCTGTGGGGGCTGCCAGCTTCCTCTGCCTCTCTGATCTCATCCCCTTCCT
CCGCATTCCATGTGACTGACACGGGTGGAGAGGAGGGTAGGGCAATGGCA
TCGTCATTTTTGACTCATTTGGATAAACAAGGGAAAGAAGAGGTGGGTGG
AGAAAGAGGACTGAGACGAGGAGGAGGGGGAGGACGAGGTGCAGGACGGG
GAAGGTCTGGGGTGCGAGGTGCGAGAAGAGGAGGGGGAAAGGCAGGAAGA
GGTGGAGGAGGGGAAAAAGGGAGCATCCAGCCGAGGGGAACCAAGATGTA
CCAGCCGGTGCCGCAGCAGAAGCAGCAGCAGCAGCAACAACAGCAGGAGC
AACAGCAAGAGCAAGATGGAAGAGCGGCAGTGAATGGCGGTGAAGGAGAA
GGGGGAGGAGGAAGAGGCGGTGTGGAGAAGGGAAGGCAGACCCTTCCTGC
TGGCCAAGGGGAATATAAGAAAAGTAGTACTGCGAGACGTGGAGCTGCCA
AGCAGCAGCAGCTGCAGCAGCAACCACAACAACCACAACAACCACAACCA
CAACAACCAACACGGCAATTGCGTCAGAGTCAGCAACAACAGCAGCAGCA
GCAGCAGGAGCAACTGCAACGGCAAGTTGGAAGAGCGACAGTGGATGCGG
CAGTGAATGGCGGTAAAGGAGAAGGGGGAGGAGGAAGAGGCGGTGTGGAG
AAGGGAAGGCAGACCCTTCCTGCTGGCCAAGGGAAAAATAAGAAAAGTAG
TACTGCGAGACGTGGAGCTGCCAAGCAGCAGCAGCCTCAGTCACAGCAGC
ATCACAAGCAACAGTATCGTGTCGCAGCAGCAGCAGCAGCAGCAGCAGCA
ACAACAACAACAGCAACAGCAGCAGCACTTAGAACAGCAGCAGCGCGGAT
CAGCCCCAAAGACAAGGGAGACAGGTGAAGAGGTTAGGAGGCAGCATCAA
CCGACATAGATGTCCACAAAGAAAAAGACAGACACAACTAGTGTGTGTGT
GCCATAGCCCCTAGCCCCATAAAAGACAGCAAACTAACTAACTAGCCAGT
TTATAGACATGAAATTTCGGAATCTCCTGGGGGAGGGAAAAGGGAGTGGG
AGCAAGCATTTGTCTTGGCTTCTCTTTCCCATCGTTTCCTCGTCCAGTCT
TTATCTTCTAGAATTTTCTAGAACGCT

Coding sequence (CDS) from alignment at scaffold_4:55751..57977+

>mRNA_1809 ID=mRNA_1809|Name=jgi.p|Nanoce1779_2|285717|organism=Nannochloropsis oceanica|type=CDS|length=1848bp|location=Sequence derived from alignment at scaffold_4:55751..57977+ (Nannochloropsis oceanica)
ATGGCACTGCATCCTTGTATTGGCTTCCTGGAGAGTACTCAGAGAGCGAG
GGGAGGCCTCGAAGGGGCGTTGGGTGGGCAGGACATGAGGGGAGGGAGGG
AGGAAGGAGGGGGGCGACGGACAGGGGAGTGGAGTCTTACGGCTGGATCA
GGAGGAGGAGGAGGAGGAGGAGGAGGGCGTGGTGGGGGGCACCCGCTCCC
ACCCGCATCTTGGTCTGCAGCCTCAGCCGCCGAGTCGTGGACGCTCGAGC
CCTCTTCTGCCCCCGAGCCTTCTTCCTCCTTCTCCTCCTCAGCCCCTCTT
TTACCTTCGATGAAGCTGCAACCTGTGGCAGTGGCGAAGGCGAAGCAGGT
CGAGGAGGAAGAAGAGGAGGGCTCGAGCCTCTACCCCTCCTCCTTCTCTG
AAGATTGGTACGTCAGCCTCGTTGGGGTTGAAGGGCCACCGGCTGCTCCT
TCCTCCTCCTCCTCGTCCTCTTCCTCCTTGCTTCGACAGACCCCTCTCGC
CGCTCCAGGCCCTTCAGGAGGTAGTCTTGGATGGGGACAGCAGCAGCAGC
CGCCGCCGCCGCCGCCGCAGCAGCAGCAGCAGCAGGGGGCACTTGGCAAT
AGGACGGGGACTGGTCCTGTCCCTCCTCCTCATCTTCACGCCCGTCTTGG
CGGTGCTGGAGAAGGGCGAGGCGCCATGAGCAACAGCAGCAGTAAAAGAA
GCAGCAGCAGCAGCAGCAATAGCGTAGGCACGGGAGGTCAGGGAGCAAGC
ACTTGGGGCCTGCCCGGCATGCTTATCCAGCCTCCATCCCCCCCCCCCTC
CCTTCCTCCTTCGACACCATCTCACAAGCAACACCCCAAGCCCCGCCTCC
CTCCTTCGATGCATTCAGCATCCTCCCCCCTTCCCTCATCCTCCTCGTCT
TCCTCTGCCACAGCGGCCCAGCTGTGGGGGCTGCCAGCTTCCTCTGCCTC
TCTGATCTCATCCCCTTCCTCCGCATTCCATGTGACTGACACGGGTGGAG
AGGAGGGTAGGGCAATGGCATCGTCATTTTTGACTCATTTGGATAAACAA
GGGAAAGAAGAGGTGGGTGGAGAAAGAGGACTGAGACGAGGAGGAGGGGG
AGGACGAGGTGCAGGACGGGGAAGGTCTGGGGTGCGAGGTGCGAGAAGAG
GAGGGGGAAAGGCAGGAAGAGGTGGAGGAGGGGAAAAAGGGAGCATCCAG
CCGAGGGGAACCAAGATGTACCAGCCGGTGCCGCAGCAGAAGCAGCAGCA
GCAGCAACAACAGCAGGAGCAACAGCAAGAGCAAGATGGAAGAGCGGCAG
TGAATGGCGGTGAAGGAGAAGGGGGAGGAGGAAGAGGCGGTGTGGAGAAG
GGAAGGCAGACCCTTCCTGCTGGCCAAGGGGAATATAAGAAAAGTAGTAC
TGCGAGACGTGGAGCTGCCAAGCAGCAGCAGCTGCAGCAGCAACCACAAC
AACCACAACAACCACAACCACAACAACCAACACGGCAATTGCGTCAGAGT
CAGCAACAACAGCAGCAGCAGCAGCAGGAGCAACTGCAACGGCAAGTTGG
AAGAGCGACAGTGGATGCGGCAGTGAATGGCGGTAAAGGAGAAGGGGGAG
GAGGAAGAGGCGGTGTGGAGAAGGGAAGGCAGACCCTTCCTGCTGGCCAA
GGGAAAAATAAGAAAAGTAGTACTGCGAGACGTGGAGCTGCCAAGCAGCA
GCAGCCTCAGTCACAGCAGCATCACAAGCAACAGTATCGTGTCGCAGCAG
CAGCAGCAGCAGCAGCAGCAACAACAACAACAGCAACAGCAGCAGCACTT
AGAACAGCAGCAGCGCGGATCAGCCCCAAAGACAAGGGAGACAGGTGA

Synonyms

Publications