jgi.p|Nanoce1779_2|577991, mRNA_1808 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|577991
Unique Name	mRNA_1808
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	648
Alignment location	scaffold_4:50068..51448 +

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Properties


Property Name	Value
TranscriptId	578077
Track	FilteredModels2
ProteinId	577991

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:50068..51448 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577991	gene_1808	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577991	mRNA_1808-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1808	CDS_1808	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:50068..51448+
coding sequence from alignment at scaffold_4:50068..51448+

mRNA sequence

>mRNA_1808 ID=mRNA_1808|Name=jgi.p|Nanoce1779_2|577991|organism=Nannochloropsis oceanica|type=mRNA|length=648bp
GACAACTGGAATGAGATAAAAGTCATGTCCTGGACACACGTACGGTTTGA
GACCTCTGTGGGCAATTTCACGCTGGAGCTCTACTATCAACATGCCCCAC
GAACATGCCACAACTTTGCTGAGCTCGCCCGTGCCGGCTATTACAACGGC
ACAATTTTCCACCGCATCATCAAGGATTTTATGATCCAGGGTGGAGATCC
CACAGGCACAGGGCGTGGAGGAGAATCGATTTACGGAGGCAAGTTTGAGG
ACGAAATAACACGGGACCTAAAGCACACGGGTGCCGGTATCCTTTCCATG
GCCAACGCCGGTCCCAACACAAACGGCAGTCAGTTCTTCCTCACCCTCGC
CCCCACGCCCTGGCTGGACGGGAAACACACCATCTTTGGGCGTGTGTCGC
ACGGCATGCCGATCGTGCAGAAGCTGGGCTTGGTGAAAGTCGGCGACGGC
GACCGGCCATTGACCGACGTGCGGGTATTTAAGGCGACGCCACTGACGGG
GCCGCCCGTTGACACCACAGTACGATAATTATCAAGTCGAGACTCAAGGA
AGGCAGCGAGAAAGACAGAAATCTGTCGAATGGCCGGATCAACTCTACTC
CACGTCATACAAACCAAAACCAAAGTAAACGATGAGATGAAGAGAAAA

protein sequence of jgi.p|Nanoce1779_2|577991

>mRNA_1808-protein ID=mRNA_1808-protein|Name=jgi.p|Nanoce1779_2|577991|organism=Nannochloropsis oceanica|type=polypeptide|length=168bp
MSWTHVRFETSVGNFTLELYYQHAPRTCHNFAELARAGYYNGTIFHRIIK
DFMIQGGDPTGTGRGGESIYGGKFEDEITRDLKHTGAGILSMANAGPNTN
GSQFFLTLAPTPWLDGKHTIFGRVSHGMPIVQKLGLVKVGDGDRPLTDVR
VFKATPLTGPPVDTTVR*

mRNA from alignment at scaffold_4:50068..51448+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1808 ID=mRNA_1808|Name=jgi.p|Nanoce1779_2|577991|organism=Nannochloropsis oceanica|type=mRNA|length=1381bp|location=Sequence derived from alignment at scaffold_4:50068..51448+ (Nannochloropsis oceanica)
GACAACTGGAATGAGATAAAAGTCATGTCCTGGACACACGTACGGTTTGA
GACCTCTGTGGTACGTAGCGAGCGGGAGTGTTGGGAGGGGTACAGGGAGG
GGCGAAGGGGGTGGGGAGGCGGAGTTGGGGATGATGGTGATTGTTGGCAG
ATGCCAGGTCCCCTTACAATATACTGCAACAACACAGGGCAATTTCACGC
TGGAGCTCTACTATCAACATGCCCCACGAACATGCCACAACTTTGCTGGT
ACGTATTTTGGCTGGCCCCCTCTCTTGCTGTCTCGTATTCCACCCAGTCA
TCCTGCCTCCCTCCCCTTTCCCCCATCCCACAACTGCAGAGCTCGCCCGT
GCCGGCTATTACAACGGCACAATTTTCCACCGCATCATCAAGGTAGGCGG
GAGGAGGGGACTGTCCGTTTAGCTTGTTATGGGCAAGGAAACTCGGACAT
GCCAGGCTATGCCCATGTCCTACATACCATACATCATTTCCACCCTCCAC
CCCTGCTATCCCCTATCCCTGCAGGATTTTATGATCCAGGGTGGAGATCC
CACAGGCACAGGGCGTGGAGGAGAATCGATTTACGGGTAAGTGTTCTGGG
TCATGAAAAAATCCGAGAACAAGGGAAATGCGAGAACAAGAGGAAAATAA
GAAGCAAGCAGCAGCACATCAGTCGATTCACACATCCACCCATACGCTCA
GAGGCAAGTTTGAGGACGAAATAACACGGGACCTAAAGCACACGGGTGCC
GGTATCCTTTCCATGGTACGTACATATCTATGGCCCGAGTTTTCCATGGC
CCGAGTTTTTCACCGTCCTCCGTCCGATTCTAATCCTCCGTCCCTCCCTC
CCCCTACTTGACAGGCCAACGCCGGTCCCAACACAAACGGCAGTCAGTTC
TTCCTCACCCTCGCCCCCACGCCCTGGCTGGACGGGAAACACACCATCTT
TGGGCGTGTGTCGCACGGCATGCCGATCGTGCAGAAGCTGGGCTTGGTGA
AAGTCGGCGACGGCGACCGGTGAGAAGGAGGGGAGTGCAGAGGGATGAGG
AGAGGGAAGTGAGGGAGGGAGGAAGGGGACGGAGGGGAGGAAGGAGTTGA
GGGAATATTGCTGTATGTTATAATTCGTATGAAGCTTGTATGAATGGTCT
TCTTTTATATTACTTACACACAAATCTTCTCAATACAGGCCATTGACCGA
CGTGCGGGTATTTAAGGCGACGCCACTGACGGGGCCGCCCGTTGACACCA
CAGTACGATAATTATCAAGTCGAGACTCAAGGAAGGCAGCGAGAAAGACA
GAAATCTGTCGAATGGCCGGATCAACTCTACTCCACGTCATACAAACCAA
AACCAAAGTAAACGATGAGATGAAGAGAAAA

Coding sequence (CDS) from alignment at scaffold_4:50068..51448+

>mRNA_1808 ID=mRNA_1808|Name=jgi.p|Nanoce1779_2|577991|organism=Nannochloropsis oceanica|type=CDS|length=3528bp|location=Sequence derived from alignment at scaffold_4:50068..51448+ (Nannochloropsis oceanica)
ATGTCCTGGACACACGTACGGTTTGAGACCTCTGTGGGCAATTTCACGCT
GGAGCTCTACTATCAACATGCCCCACGAACATGCCACAACTTTGCTGAGC
TCGCCCGTGCCGGCTATTACAACGGCACAATTTTCCACCGCATCATCAAG
GATTTTATGATCCAGGGTGGAGATCCCACAGGCACAGGGCGTGGAGGAGA
ATCGATTTACGGAGGCAAGTTTGAGGACGAAATAACACGGGACCTAAAGC
ACACGGGTGCCGGTATCCTTTCCATGGCCAACGCCGGTCCCAACACAAAC
GGCAGTCAGTTCTTCCTCACCCTCGCCCCCACGCCCTGGCTGGACGGGAA
ACACACCATCTTTGGGCGTGTGTCGCACGGCATGCCGATCGTGCAGAAGC
TGGGCTTGGTGAAAGTCGGCGACGGCGACCGGCCATTGACCGACGTGCGG
GTATTTAAGGCGACGCCACTGACGGGGCCGCCCGTTGACACCACAGTACG
ATAAATGTCCTGGACACACGTACGGTTTGAGACCTCTGTGGGCAATTTCA
CGCTGGAGCTCTACTATCAACATGCCCCACGAACATGCCACAACTTTGCT
GAGCTCGCCCGTGCCGGCTATTACAACGGCACAATTTTCCACCGCATCAT
CAAGGATTTTATGATCCAGGGTGGAGATCCCACAGGCACAGGGCGTGGAG
GAGAATCGATTTACGGAGGCAAGTTTGAGGACGAAATAACACGGGACCTA
AAGCACACGGGTGCCGGTATCCTTTCCATGGCCAACGCCGGTCCCAACAC
AAACGGCAGTCAGTTCTTCCTCACCCTCGCCCCCACGCCCTGGCTGGACG
GGAAACACACCATCTTTGGGCGTGTGTCGCACGGCATGCCGATCGTGCAG
AAGCTGGGCTTGGTGAAAGTCGGCGACGGCGACCGGCCATTGACCGACGT
GCGGGTATTTAAGGCGACGCCACTGACGGGGCCGCCCGTTGACACCACAG
TACGATAAATGTCCTGGACACACGTACGGTTTGAGACCTCTGTGGGCAAT
TTCACGCTGGAGCTCTACTATCAACATGCCCCACGAACATGCCACAACTT
TGCTGAGCTCGCCCGTGCCGGCTATTACAACGGCACAATTTTCCACCGCA
TCATCAAGGATTTTATGATCCAGGGTGGAGATCCCACAGGCACAGGGCGT
GGAGGAGAATCGATTTACGGAGGCAAGTTTGAGGACGAAATAACACGGGA
CCTAAAGCACACGGGTGCCGGTATCCTTTCCATGGCCAACGCCGGTCCCA
ACACAAACGGCAGTCAGTTCTTCCTCACCCTCGCCCCCACGCCCTGGCTG
GACGGGAAACACACCATCTTTGGGCGTGTGTCGCACGGCATGCCGATCGT
GCAGAAGCTGGGCTTGGTGAAAGTCGGCGACGGCGACCGGCCATTGACCG
ACGTGCGGGTATTTAAGGCGACGCCACTGACGGGGCCGCCCGTTGACACC
ACAGTACGATAAATGTCCTGGACACACGTACGGTTTGAGACCTCTGTGGG
CAATTTCACGCTGGAGCTCTACTATCAACATGCCCCACGAACATGCCACA
ACTTTGCTGAGCTCGCCCGTGCCGGCTATTACAACGGCACAATTTTCCAC
CGCATCATCAAGGATTTTATGATCCAGGGTGGAGATCCCACAGGCACAGG
GCGTGGAGGAGAATCGATTTACGGAGGCAAGTTTGAGGACGAAATAACAC
GGGACCTAAAGCACACGGGTGCCGGTATCCTTTCCATGGCCAACGCCGGT
CCCAACACAAACGGCAGTCAGTTCTTCCTCACCCTCGCCCCCACGCCCTG
GCTGGACGGGAAACACACCATCTTTGGGCGTGTGTCGCACGGCATGCCGA
TCGTGCAGAAGCTGGGCTTGGTGAAAGTCGGCGACGGCGACCGGCCATTG
ACCGACGTGCGGGTATTTAAGGCGACGCCACTGACGGGGCCGCCCGTTGA
CACCACAGTACGATAAATGTCCTGGACACACGTACGGTTTGAGACCTCTG
TGGGCAATTTCACGCTGGAGCTCTACTATCAACATGCCCCACGAACATGC
CACAACTTTGCTGAGCTCGCCCGTGCCGGCTATTACAACGGCACAATTTT
CCACCGCATCATCAAGGATTTTATGATCCAGGGTGGAGATCCCACAGGCA
CAGGGCGTGGAGGAGAATCGATTTACGGAGGCAAGTTTGAGGACGAAATA
ACACGGGACCTAAAGCACACGGGTGCCGGTATCCTTTCCATGGCCAACGC
CGGTCCCAACACAAACGGCAGTCAGTTCTTCCTCACCCTCGCCCCCACGC
CCTGGCTGGACGGGAAACACACCATCTTTGGGCGTGTGTCGCACGGCATG
CCGATCGTGCAGAAGCTGGGCTTGGTGAAAGTCGGCGACGGCGACCGGCC
ATTGACCGACGTGCGGGTATTTAAGGCGACGCCACTGACGGGGCCGCCCG
TTGACACCACAGTACGATAAATGTCCTGGACACACGTACGGTTTGAGACC
TCTGTGGGCAATTTCACGCTGGAGCTCTACTATCAACATGCCCCACGAAC
ATGCCACAACTTTGCTGAGCTCGCCCGTGCCGGCTATTACAACGGCACAA
TTTTCCACCGCATCATCAAGGATTTTATGATCCAGGGTGGAGATCCCACA
GGCACAGGGCGTGGAGGAGAATCGATTTACGGAGGCAAGTTTGAGGACGA
AATAACACGGGACCTAAAGCACACGGGTGCCGGTATCCTTTCCATGGCCA
ACGCCGGTCCCAACACAAACGGCAGTCAGTTCTTCCTCACCCTCGCCCCC
ACGCCCTGGCTGGACGGGAAACACACCATCTTTGGGCGTGTGTCGCACGG
CATGCCGATCGTGCAGAAGCTGGGCTTGGTGAAAGTCGGCGACGGCGACC
GGCCATTGACCGACGTGCGGGTATTTAAGGCGACGCCACTGACGGGGCCG
CCCGTTGACACCACAGTACGATAAATGTCCTGGACACACGTACGGTTTGA
GACCTCTGTGGGCAATTTCACGCTGGAGCTCTACTATCAACATGCCCCAC
GAACATGCCACAACTTTGCTGAGCTCGCCCGTGCCGGCTATTACAACGGC
ACAATTTTCCACCGCATCATCAAGGATTTTATGATCCAGGGTGGAGATCC
CACAGGCACAGGGCGTGGAGGAGAATCGATTTACGGAGGCAAGTTTGAGG
ACGAAATAACACGGGACCTAAAGCACACGGGTGCCGGTATCCTTTCCATG
GCCAACGCCGGTCCCAACACAAACGGCAGTCAGTTCTTCCTCACCCTCGC
CCCCACGCCCTGGCTGGACGGGAAACACACCATCTTTGGGCGTGTGTCGC
ACGGCATGCCGATCGTGCAGAAGCTGGGCTTGGTGAAAGTCGGCGACGGC
GACCGGCCATTGACCGACGTGCGGGTATTTAAGGCGACGCCACTGACGGG
GCCGCCCGTTGACACCACAGTACGATAA

Synonyms

Publications