jgi.p|Nanoce1779_2|577987, mRNA_1807 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577987
Unique NamemRNA_1807
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length663
Alignment locationscaffold_4:48184..49317 -

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Properties
Property NameValue
TranscriptId578073
TrackFilteredModels2
ProteinId577987
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:48184..49317 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577987gene_1807Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577987mRNA_1807-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1807CDS_1807Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1807 ID=mRNA_1807|Name=jgi.p|Nanoce1779_2|577987|organism=Nannochloropsis oceanica|type=mRNA|length=663bp
TTGCGAGGGGTCCGTGACATACCTTCTCCGTCAGCTCTTTTTCCCGCTCC
TGAGGCCTCTGTCCGCGGCATTAAAAAAGGCGCAAGGGCATGCAGTAGGG
CAACAGCACCAACAGCAGCAGCAGCAGCAGCAGCACCCCCATCACCATGG
AGAACGGTCGGAAGATGGATCGTATACGAGACAAGAGCAGCAACAGAAAA
AGAAGAACAAGAAGGACGAGGACGAGGGTAGGATGGTGCACCTGGACGGG
CCTTCGGTTTATTCCTGTTGCATGTGTCGCACGCATTTGGCAACGGATAT
GGAGGTGGTTTCAAGGGCCTTCCACGGACGGGGTGGACGTGCCTTTCTCC
TCGACAAAGTCGTCAACATATCACCTGGTCCCTCGGAGCAGCGCATGCTT
ATGACGGGCCTCCACTCCGTGTCCGATTTGAGGTGTGCCACATGTCACAC
AGTGCTGGGGTGGCAATATGACAAGGCATTTGAGCCCAGCCAGAAGTACA
AGGAGGGGAAATTCGTCCTGGAGATGGTGCACGTGCGCTTGGAGGAGGAA
GAGGAGGAAGAGGAGGCGGAATGGTGAAAGAGGGAGGGAGGGAGAAGGGG
AGGAAGAGTGTGAATACGAAGGAGATGTGAGTAGATATCAAGGTGGTGTG
AAGCAAGAGGGAG
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protein sequence of jgi.p|Nanoce1779_2|577987

>mRNA_1807-protein ID=mRNA_1807-protein|Name=jgi.p|Nanoce1779_2|577987|organism=Nannochloropsis oceanica|type=polypeptide|length=115bp
MVHLDGPSVYSCCMCRTHLATDMEVVSRAFHGRGGRAFLLDKVVNISPGP
SEQRMLMTGLHSVSDLRCATCHTVLGWQYDKAFEPSQKYKEGKFVLEMVH
VRLEEEEEEEEAEW*
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mRNA from alignment at scaffold_4:48184..49317-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1807 ID=mRNA_1807|Name=jgi.p|Nanoce1779_2|577987|organism=Nannochloropsis oceanica|type=mRNA|length=1134bp|location=Sequence derived from alignment at scaffold_4:48184..49317- (Nannochloropsis oceanica)
TTGCGAGGGGTCCGTGACATACCTTCTCCGTCAGCTCTTTTTCCCGCTCC
TGAGGCCTCTGTCCGCGGCATTAAAAAAGGCGCAAGGGCATGCAGTAGGG
CAACAGCACCAACAGCAGCAGCAGCAGCAGCAGCACCCCCATCACCATGG
AGAACGGTCGGAAGATGGATCGTATACGAGACAAGAGCAGCAACAGAAAA
AGAAGAACAAGAAGGACGAGGACGAGGGTAGGATGGTGCACCTGGACGGG
CCTTCGGTTTATTCCTGTTGCATGTGTCGCACGCATTTGGCAACGGATAT
GGAGGTGGTTTCAAGGGTGAGGAAGACGGGAGGGTGGCAAGGCGGCGGGG
GGGGAGGGAGGGGGGGTAGTCGAAGGGGATGAAGGGGAATGTGGGGAACA
CTAGATGCATGCATCACACACAGACATAACTCGTCCCCTCTCCCGCCTTA
ACACCTCACACACACACATACATATATAGGCCTTCCACGGACGGGGTGGA
CGTGCCTTTCTCCTCGACAAAGTGTGAGTACCTCCTTATCCCTCCCTCCC
TCTCTTTCCCTCCCACCCATTTTTCCCTTTCGCCCGCCAACTACTTATGC
TCGACGGCCTTGCGATTCCCTCCCTCCCTCCCTCCCTCTCTCCCTTCCTC
CCCTTCCTCACCCAGCGTCAACATATCACCTGGTCCCTCGGAGCAGCGCA
TGCTTATGACGGGCCTCCACTCCGTGTCCGATTTGAGGTGTGCCACATGT
CACACAGTGCTGGGGTGGCAATATGTACGTAGGGAGGGGGGGAGGGAGGA
AGGGGTCAGGGAGGGAGGAATGGAAAGAAGGATGAAAGACGGAGAACAAG
GGAATCTCGACGAATGGGAGAAAGGGAGGGAGAGAGAGAGGGAACGGCGT
CGGACTCACGTCGTATTATTTTCATTACGCATGCATGCAGGACAAGGCAT
TTGAGCCCAGCCAGAAGTACAAGGAGGGGAAATTCGTCCTGGAGATGGTG
CACGTGCGCTTGGAGGAGGAAGAGGAGGAAGAGGAGGCGGAATGGTGAAA
GAGGGAGGGAGGGAGAAGGGGAGGAAGAGTGTGAATACGAAGGAGATGTG
AGTAGATATCAAGGTGGTGTGAAGCAAGAGGGAG
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Coding sequence (CDS) from alignment at scaffold_4:48184..49317-

>mRNA_1807 ID=mRNA_1807|Name=jgi.p|Nanoce1779_2|577987|organism=Nannochloropsis oceanica|type=CDS|length=1380bp|location=Sequence derived from alignment at scaffold_4:48184..49317- (Nannochloropsis oceanica)
GACAAGGCATTTGAGCCCAGCCAGAAGTACAAGGAGGGGAAATTCGTCCT
GGAGATGGTGCACGTGCGCTTGGAGGAGGAAGAGGAGGAAGAGGAGGCGG
AATGGTGACGTCAACATATCACCTGGTCCCTCGGAGCAGCGCATGCTTAT
GACGGGCCTCCACTCCGTGTCCGATTTGAGGTGTGCCACATGTCACACAG
TGCTGGGGTGGCAATATGCCTTCCACGGACGGGGTGGACGTGCCTTTCTC
CTCGACAAAGTATGGTGCACCTGGACGGGCCTTCGGTTTATTCCTGTTGC
ATGTGTCGCACGCATTTGGCAACGGATATGGAGGTGGTTTCAAGGGACAA
GGCATTTGAGCCCAGCCAGAAGTACAAGGAGGGGAAATTCGTCCTGGAGA
TGGTGCACGTGCGCTTGGAGGAGGAAGAGGAGGAAGAGGAGGCGGAATGG
TGACGTCAACATATCACCTGGTCCCTCGGAGCAGCGCATGCTTATGACGG
GCCTCCACTCCGTGTCCGATTTGAGGTGTGCCACATGTCACACAGTGCTG
GGGTGGCAATATGCCTTCCACGGACGGGGTGGACGTGCCTTTCTCCTCGA
CAAAGTATGGTGCACCTGGACGGGCCTTCGGTTTATTCCTGTTGCATGTG
TCGCACGCATTTGGCAACGGATATGGAGGTGGTTTCAAGGGACAAGGCAT
TTGAGCCCAGCCAGAAGTACAAGGAGGGGAAATTCGTCCTGGAGATGGTG
CACGTGCGCTTGGAGGAGGAAGAGGAGGAAGAGGAGGCGGAATGGTGACG
TCAACATATCACCTGGTCCCTCGGAGCAGCGCATGCTTATGACGGGCCTC
CACTCCGTGTCCGATTTGAGGTGTGCCACATGTCACACAGTGCTGGGGTG
GCAATATGCCTTCCACGGACGGGGTGGACGTGCCTTTCTCCTCGACAAAG
TATGGTGCACCTGGACGGGCCTTCGGTTTATTCCTGTTGCATGTGTCGCA
CGCATTTGGCAACGGATATGGAGGTGGTTTCAAGGGACAAGGCATTTGAG
CCCAGCCAGAAGTACAAGGAGGGGAAATTCGTCCTGGAGATGGTGCACGT
GCGCTTGGAGGAGGAAGAGGAGGAAGAGGAGGCGGAATGGTGACGTCAAC
ATATCACCTGGTCCCTCGGAGCAGCGCATGCTTATGACGGGCCTCCACTC
CGTGTCCGATTTGAGGTGTGCCACATGTCACACAGTGCTGGGGTGGCAAT
ATGCCTTCCACGGACGGGGTGGACGTGCCTTTCTCCTCGACAAAGTATGG
TGCACCTGGACGGGCCTTCGGTTTATTCCTGTTGCATGTGTCGCACGCAT
TTGGCAACGGATATGGAGGTGGTTTCAAGG
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Synonyms
Publications