jgi.p|Nanoce1779_2|659571, mRNA_1805 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|659571
Unique Name	mRNA_1805
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1228
Alignment location	scaffold_4:42833..44202 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	659657
Track	FilteredModels2
ProteinId	659571

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:42833..44202 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|659571	gene_1805	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|659571	mRNA_1805-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1805	CDS_1805	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:42833..44202+
coding sequence from alignment at scaffold_4:42833..44202+

mRNA sequence

>mRNA_1805 ID=mRNA_1805|Name=jgi.p|Nanoce1779_2|659571|organism=Nannochloropsis oceanica|type=mRNA|length=1228bp
ATGGTGAAGGTGGTGGCGGGGATGGCGCTGGGTGGGCTGTTGGGGGCAGA
GGAATGGAAGGTGGAGGAGGTGGTGAGGGAGATGATGGATTTGGAGGGCT
CGCCCAAGCCGCATGTCCTGCGGGTGCTGGCCTCCTTCACGCAGGACGAG
GAGGACAGAGCGGTGTTGTTTTGGATGGGTGGAGGAGGGGGAGGGAGTGG
AGGAGGGAAGGCCATGTATGAGAAGTGGGTGGTCAGGCAGCGGTTGACGA
TAGGGGAGGTGTTGGAGATGGTGCCGAGCTGCAGACCCACCTTAGCAGCA
TTGCTGGATGTGTTGTCGCCCATCCCCGCCCGGTATTATTCTGTGGCGTC
TTCGCCGTTGGTGTGTCCCTCCAAGCTGACGGTGGCGTTCAGTGTGGTGA
AGTATACGCTGGCCGTGGCCGGGGAGGGAGAGAGGGAGGGAGGGGTGGTT
AGGAGGAAGGGACTGTGCACGACCTGGTTGGAGGAAATGCTGCGGGAGGC
TGGTGCCACGGGTGTTGCTCCATTTATGGGCTTTTTGTCGCACCGACGGG
CACGCCGGGCGGCTATTGAGAGCGCGAAAGCGGAGGTGTGTAGTGGCTAC
TGGAGGGGGGGATTTGAAGTGGAAGGGGGGGAGGAGGAGGGGGGGTTGGG
GGGATGGGCGCAAAAGGAGGGGGAAGGGCCCATATTGTTGTTCTTTGGCT
GTCGGACGCGGGACAAGGATTGGATATACCGGGAGGAAATGGAGGACTTT
TTGAGGCAGGGGGTGTTGACGGAGATGCACACGGCGTTCTCGAGGGAGGC
GGGGAAGAAGGTGTATGTGCAGGATCGTATGCGCGAGCAGGGGGCGAGGC
TGGCACGGTTATTGTTGAAGGAGGGGGCGTATTTATATGTGTGTGGTGAT
GCAGAGAATATGGCTAGGGATGTGCATTCTAACTTGAAGGCGTTGCTGGT
GCAACATGGACAGGGACAACCAGGGAAGCCGGGGCAGGAGCAAGGAGGGG
TGCGGACGGAGGAGGAGGCGGAGGCGTTTTTGAGTGAACTTAAGCAGCGA
CAGCGGTACGTCCTTGATATTTGGTCTTAAGTTGAGGAGGAGGTACGGGA
ATGTGTGGAGGAGGTGATGATGTGTATGCGTAACGTGCGAGATAAAGTAG
GTCAAATAACGTAGCCGCAAGAGATAAAGAACTAATTTGATGTCAGTGAC
ATGAATTCAAGTAGTGCATATTTGCACG

protein sequence of jgi.p|Nanoce1779_2|659571

>mRNA_1805-protein ID=mRNA_1805-protein|Name=jgi.p|Nanoce1779_2|659571|organism=Nannochloropsis oceanica|type=polypeptide|length=360bp
MVKVVAGMALGGLLGAEEWKVEEVVREMMDLEGSPKPHVLRVLASFTQDE
EDRAVLFWMGGGGGGSGGGKAMYEKWVVRQRLTIGEVLEMVPSCRPTLAA
LLDVLSPIPARYYSVASSPLVCPSKLTVAFSVVKYTLAVAGEGEREGGVV
RRKGLCTTWLEEMLREAGATGVAPFMGFLSHRRARRAAIESAKAEVCSGY
WRGGFEVEGGEEEGGLGGWAQKEGEGPILLFFGCRTRDKDWIYREEMEDF
LRQGVLTEMHTAFSREAGKKVYVQDRMREQGARLARLLLKEGAYLYVCGD
AENMARDVHSNLKALLVQHGQGQPGKPGQEQGGVRTEEEAEAFLSELKQR
QRYVLDIWS*

mRNA from alignment at scaffold_4:42833..44202+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1805 ID=mRNA_1805|Name=jgi.p|Nanoce1779_2|659571|organism=Nannochloropsis oceanica|type=mRNA|length=1370bp|location=Sequence derived from alignment at scaffold_4:42833..44202+ (Nannochloropsis oceanica)
ATGGTGAAGGTGGTGGCGGGGATGGCGCTGGGTGGGCTGTTGGGGGCAGA
GGAATGGAAGGTGGAGGAGGTGGTGAGGGAGATGATGGATTTGGAGGGCT
CGCCCAAGCCGCATGTCCTGCGGGTGCTGGCCTCCTTCACGCAGGACGAG
GAGGACAGAGCGGTGTTGTTTTGGATGGGTGGAGGAGGGGGAGGGAGTGG
AGGAGGGAAGGCCATGTATGAGAAGTGGGTGGTCAGGCAGCGGTTGACGA
TAGGGGAGGTGTTGGAGATGGTGCCGAGCTGCAGACCCACCTTAGCAGCA
TTGCTGGATGTGTTGTCGCCCATCCCCGCCCGGTATTATTCTGTGGCGTC
TTCGCCGTTGGTGTGTCCCTCCAAGCTGACGGTGGCGTTCAGTGTGGTGA
AGTATACGCTGGCCGTGGCCGGGGAGGGAGAGAGGGAGGGAGGGGTGGTT
AGGAGGAAGGGACTGTGCACGACCTGGTTGGAGGAAATGCTGCGGGAGGC
TGGTGCCACGGGTGAGACATCGGGCGACAACATCCAGGACCTCCGTCTGT
CTTCTGCTTTGACCTCCGTCTCTATCTTCCTCAAGCCTGCGAAGGAATTT
GTTTTGCCGGGGTAGCGCCAAGTGGCCCTTGGTGCTCGTCGGTCCTGGCA
CAGGTGTTGCTCCATTTATGGGCTTTTTGTCGCACCGACGGGCACGCCGG
GCGGCTATTGAGAGCGCGAAAGCGGAGGTGTGTAGTGGCTACTGGAGGGG
GGGATTTGAAGTGGAAGGGGGGGAGGAGGAGGGGGGGTTGGGGGGATGGG
CGCAAAAGGAGGGGGAAGGGCCCATATTGTTGTTCTTTGGCTGTCGGACG
CGGGACAAGGATTGGATATACCGGGAGGAAATGGAGGACTTTTTGAGGCA
GGGGGTGTTGACGGAGATGCACACGGCGTTCTCGAGGGAGGCGGGGAAGA
AGGTGTATGTGCAGGATCGTATGCGCGAGCAGGGGGCGAGGCTGGCACGG
TTATTGTTGAAGGAGGGGGCGTATTTATATGTGTGTGGTGATGCAGAGAA
TATGGCTAGGGATGTGCATTCTAACTTGAAGGCGTTGCTGGTGCAACATG
GACAGGGACAACCAGGGAAGCCGGGGCAGGAGCAAGGAGGGGTGCGGACG
GAGGAGGAGGCGGAGGCGTTTTTGAGTGAACTTAAGCAGCGACAGCGGTA
CGTCCTTGATATTTGGTCTTAAGTTGAGGAGGAGGTACGGGAATGTGTGG
AGGAGGTGATGATGTGTATGCGTAACGTGCGAGATAAAGTAGGTCAAATA
ACGTAGCCGCAAGAGATAAAGAACTAATTTGATGTCAGTGACATGAATTC
AAGTAGTGCATATTTGCACG

Coding sequence (CDS) from alignment at scaffold_4:42833..44202+

>mRNA_1805 ID=mRNA_1805|Name=jgi.p|Nanoce1779_2|659571|organism=Nannochloropsis oceanica|type=CDS|length=2160bp|location=Sequence derived from alignment at scaffold_4:42833..44202+ (Nannochloropsis oceanica)
ATGGTGAAGGTGGTGGCGGGGATGGCGCTGGGTGGGCTGTTGGGGGCAGA
GGAATGGAAGGTGGAGGAGGTGGTGAGGGAGATGATGGATTTGGAGGGCT
CGCCCAAGCCGCATGTCCTGCGGGTGCTGGCCTCCTTCACGCAGGACGAG
GAGGACAGAGCGGTGTTGTTTTGGATGGGTGGAGGAGGGGGAGGGAGTGG
AGGAGGGAAGGCCATGTATGAGAAGTGGGTGGTCAGGCAGCGGTTGACGA
TAGGGGAGGTGTTGGAGATGGTGCCGAGCTGCAGACCCACCTTAGCAGCA
TTGCTGGATGTGTTGTCGCCCATCCCCGCCCGGTATTATTCTGTGGCGTC
TTCGCCGTTGGTGTGTCCCTCCAAGCTGACGGTGGCGTTCAGTGTGGTGA
AGTATACGCTGGCCGTGGCCGGGGAGGGAGAGAGGGAGGGAGGGGTGGTT
AGGAGGAAGGGACTGTGCACGACCTGGTTGGAGGAAATGCTGCGGGAGGC
TGGTGCCACGGGTGTTGCTCCATTTATGGGCTTTTTGTCGCACCGACGGG
CACGCCGGGCGGCTATTGAGAGCGCGAAAGCGGAGGTGTGTAGTGGCTAC
TGGAGGGGGGGATTTGAAGTGGAAGGGGGGGAGGAGGAGGGGGGGTTGGG
GGGATGGGCGCAAAAGGAGGGGGAAGGGCCCATATTGTTGTTCTTTGGCT
GTCGGACGCGGGACAAGGATTGGATATACCGGGAGGAAATGGAGGACTTT
TTGAGGCAGGGGGTGTTGACGGAGATGCACACGGCGTTCTCGAGGGAGGC
GGGGAAGAAGGTGTATGTGCAGGATCGTATGCGCGAGCAGGGGGCGAGGC
TGGCACGGTTATTGTTGAAGGAGGGGGCGTATTTATATGTGTGTGGTGAT
GCAGAGAATATGGCTAGGGATGTGCATTCTAACTTGAAGGCGTTGCTGGT
GCAACATGGACAGGGACAACCAGGGAAGCCGGGGCAGGAGCAAGGAGGGG
TGCGGACGGAGGAGGAGGCGGAGGCGTTTTTGAGTGAACTTAAGCAGCGA
CAGCGGTACGTCCTTGATATTTGGTCTTAAATGGTGAAGGTGGTGGCGGG
GATGGCGCTGGGTGGGCTGTTGGGGGCAGAGGAATGGAAGGTGGAGGAGG
TGGTGAGGGAGATGATGGATTTGGAGGGCTCGCCCAAGCCGCATGTCCTG
CGGGTGCTGGCCTCCTTCACGCAGGACGAGGAGGACAGAGCGGTGTTGTT
TTGGATGGGTGGAGGAGGGGGAGGGAGTGGAGGAGGGAAGGCCATGTATG
AGAAGTGGGTGGTCAGGCAGCGGTTGACGATAGGGGAGGTGTTGGAGATG
GTGCCGAGCTGCAGACCCACCTTAGCAGCATTGCTGGATGTGTTGTCGCC
CATCCCCGCCCGGTATTATTCTGTGGCGTCTTCGCCGTTGGTGTGTCCCT
CCAAGCTGACGGTGGCGTTCAGTGTGGTGAAGTATACGCTGGCCGTGGCC
GGGGAGGGAGAGAGGGAGGGAGGGGTGGTTAGGAGGAAGGGACTGTGCAC
GACCTGGTTGGAGGAAATGCTGCGGGAGGCTGGTGCCACGGGTGTTGCTC
CATTTATGGGCTTTTTGTCGCACCGACGGGCACGCCGGGCGGCTATTGAG
AGCGCGAAAGCGGAGGTGTGTAGTGGCTACTGGAGGGGGGGATTTGAAGT
GGAAGGGGGGGAGGAGGAGGGGGGGTTGGGGGGATGGGCGCAAAAGGAGG
GGGAAGGGCCCATATTGTTGTTCTTTGGCTGTCGGACGCGGGACAAGGAT
TGGATATACCGGGAGGAAATGGAGGACTTTTTGAGGCAGGGGGTGTTGAC
GGAGATGCACACGGCGTTCTCGAGGGAGGCGGGGAAGAAGGTGTATGTGC
AGGATCGTATGCGCGAGCAGGGGGCGAGGCTGGCACGGTTATTGTTGAAG
GAGGGGGCGTATTTATATGTGTGTGGTGATGCAGAGAATATGGCTAGGGA
TGTGCATTCTAACTTGAAGGCGTTGCTGGTGCAACATGGACAGGGACAAC
CAGGGAAGCCGGGGCAGGAGCAAGGAGGGGTGCGGACGGAGGAGGAGGCG
GAGGCGTTTTTGAGTGAACTTAAGCAGCGACAGCGGTACGTCCTTGATAT
TTGGTCTTAA

Synonyms

Publications