jgi.p|Nanoce1779_2|285525, mRNA_1804 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|285525
Unique NamemRNA_1804
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1225
Alignment locationscaffold_4:40956..42180 +

Link to JBrowse

Properties
Property NameValue
TranscriptId285611
TrackFilteredModels2
ProteinId285525
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:40956..42180 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|285525gene_1804Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|285525mRNA_1804-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1804CDS_1804Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1804 ID=mRNA_1804|Name=jgi.p|Nanoce1779_2|285525|organism=Nannochloropsis oceanica|type=mRNA|length=1225bp
CCGGATGTGATTTCTTTTGCTCAGTCAGAGTTTTAGTGAGGAGTGCCTTA
GTGACATTCCAATCCGACATACAAACCCTACACAGGCACATTCACAGCCC
CGCCATCCACGCCATCATGAGCGACGACCCCGCAAGGTAGGCTTCCTTTC
TTCCTTTCCTTATCCTTGTTATTCCTCATCATCGGGCTGCACATGCAGCT
GCAACCACCTCACCCTTTCCACCTTACACACACCACCCTCCTCATCCCCA
GTCAACCGTCGGTGTTGGTTGGCTTTGGCAGTGCCACGGGCAACTCCGAA
TTCATCGCTAAGCGGATCCATGCCGAACTACAAGAAAAGCACGGCCTGAA
AAGAGTGCAGCTCTTTGCCTTGAACGATTGGAAGAAGTTGTCCGACCCGA
CCTTTGAGGAGTACCAAGCAGGAATCTTTGTCTGCGCCACCACAGGGAAT
GGCGACGCACCGGAGAACGCAGAGAAGTTCTGGCGGTTTTTGAAACGCCG
CACGCAGCCCAAGACCTTGTTGAGTAAGGGCATGCACTTCGCCGTCCTGG
GGCTGGGCGACACCAACTATGACAAGTTTTGTCACATGGGCAAGAGCATG
GACGCGCGCTTGGGGGAGGTGGGGGGACGCCGAGTGTGCAAGGTGGGGAT
GGCTGACGAGGCCATGGGGTTGGAAGGGACTGTGGAACCTTGGATTGACG
CCTTGTACCCGGCCTTGCTCAAGGTGTTGGGTCTCGATGGGCAAGCAGGA
GCAGGAGCAGTGGAGGCCTCACCACCGACGACGACGACTGCGACGAGTGC
GACGACGGCGAGTGTTGGGAATGCTGCTGCTCCTGCTGCTGGTGTCGAGA
CCCCTGCAGTGGTAGCTGCGACATCTGTCGCGGCGGCCGCTGCCCCGACG
GTCAATGGCAAAGAGGTTGATAAGGAGGAGGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAAAGGAGGACGCGGCTACAGCAGCAGTAACAACGGCAGTGG
AAGCCAAGCTAACCCTGAAGGAACAGAAAGCCATGCATCAAAACCCCACA
GAAATGTCAGGGCCGCAAATGCAAACGCGGGGGGGGGGCGCTGACCAAGG
AAAGTGGAGCCAGATGGTTGGCTGATATGGTGCTTTCTGAGGAGTTCTCT
CGGATACAAAAAGAGGCGAAGGAGATGTTGAAGGCCACGCCCTTGGTACC
CTACGCACCCTCGGTCAAGATCGTC
back to top

protein sequence of jgi.p|Nanoce1779_2|285525

>mRNA_1804-protein ID=mRNA_1804-protein|Name=jgi.p|Nanoce1779_2|285525|organism=Nannochloropsis oceanica|type=polypeptide|length=311bp
MQLQPPHPFHLTHTTLLIPSQPSVLVGFGSATGNSEFIAKRIHAELQEKH
GLKRVQLFALNDWKKLSDPTFEEYQAGIFVCATTGNGDAPENAEKFWRFL
KRRTQPKTLLSKGMHFAVLGLGDTNYDKFCHMGKSMDARLGEVGGRRVCK
VGMADEAMGLEGTVEPWIDALYPALLKVLGLDGQAGAGAVEASPPTTTTA
TSATTASVGNAAAPAAGVETPAVVAATSVAAAAAPTVNGKEVDKEEAAAA
AAAAAAKEDAATAAVTTAVEAKLTLKEQKAMHQNPTEMSGPQMQTRGGGA
DQGKWSQMVG*
back to top

mRNA from alignment at scaffold_4:40956..42180+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1804 ID=mRNA_1804|Name=jgi.p|Nanoce1779_2|285525|organism=Nannochloropsis oceanica|type=mRNA|length=1225bp|location=Sequence derived from alignment at scaffold_4:40956..42180+ (Nannochloropsis oceanica)
CCGGATGTGATTTCTTTTGCTCAGTCAGAGTTTTAGTGAGGAGTGCCTTA
GTGACATTCCAATCCGACATACAAACCCTACACAGGCACATTCACAGCCC
CGCCATCCACGCCATCATGAGCGACGACCCCGCAAGGTAGGCTTCCTTTC
TTCCTTTCCTTATCCTTGTTATTCCTCATCATCGGGCTGCACATGCAGCT
GCAACCACCTCACCCTTTCCACCTTACACACACCACCCTCCTCATCCCCA
GTCAACCGTCGGTGTTGGTTGGCTTTGGCAGTGCCACGGGCAACTCCGAA
TTCATCGCTAAGCGGATCCATGCCGAACTACAAGAAAAGCACGGCCTGAA
AAGAGTGCAGCTCTTTGCCTTGAACGATTGGAAGAAGTTGTCCGACCCGA
CCTTTGAGGAGTACCAAGCAGGAATCTTTGTCTGCGCCACCACAGGGAAT
GGCGACGCACCGGAGAACGCAGAGAAGTTCTGGCGGTTTTTGAAACGCCG
CACGCAGCCCAAGACCTTGTTGAGTAAGGGCATGCACTTCGCCGTCCTGG
GGCTGGGCGACACCAACTATGACAAGTTTTGTCACATGGGCAAGAGCATG
GACGCGCGCTTGGGGGAGGTGGGGGGACGCCGAGTGTGCAAGGTGGGGAT
GGCTGACGAGGCCATGGGGTTGGAAGGGACTGTGGAACCTTGGATTGACG
CCTTGTACCCGGCCTTGCTCAAGGTGTTGGGTCTCGATGGGCAAGCAGGA
GCAGGAGCAGTGGAGGCCTCACCACCGACGACGACGACTGCGACGAGTGC
GACGACGGCGAGTGTTGGGAATGCTGCTGCTCCTGCTGCTGGTGTCGAGA
CCCCTGCAGTGGTAGCTGCGACATCTGTCGCGGCGGCCGCTGCCCCGACG
GTCAATGGCAAAGAGGTTGATAAGGAGGAGGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAAAGGAGGACGCGGCTACAGCAGCAGTAACAACGGCAGTGG
AAGCCAAGCTAACCCTGAAGGAACAGAAAGCCATGCATCAAAACCCCACA
GAAATGTCAGGGCCGCAAATGCAAACGCGGGGGGGGGGCGCTGACCAAGG
AAAGTGGAGCCAGATGGTTGGCTGATATGGTGCTTTCTGAGGAGTTCTCT
CGGATACAAAAAGAGGCGAAGGAGATGTTGAAGGCCACGCCCTTGGTACC
CTACGCACCCTCGGTCAAGATCGTC
back to top

Coding sequence (CDS) from alignment at scaffold_4:40956..42180+

>mRNA_1804 ID=mRNA_1804|Name=jgi.p|Nanoce1779_2|285525|organism=Nannochloropsis oceanica|type=CDS|length=933bp|location=Sequence derived from alignment at scaffold_4:40956..42180+ (Nannochloropsis oceanica)
ATGCAGCTGCAACCACCTCACCCTTTCCACCTTACACACACCACCCTCCT
CATCCCCAGTCAACCGTCGGTGTTGGTTGGCTTTGGCAGTGCCACGGGCA
ACTCCGAATTCATCGCTAAGCGGATCCATGCCGAACTACAAGAAAAGCAC
GGCCTGAAAAGAGTGCAGCTCTTTGCCTTGAACGATTGGAAGAAGTTGTC
CGACCCGACCTTTGAGGAGTACCAAGCAGGAATCTTTGTCTGCGCCACCA
CAGGGAATGGCGACGCACCGGAGAACGCAGAGAAGTTCTGGCGGTTTTTG
AAACGCCGCACGCAGCCCAAGACCTTGTTGAGTAAGGGCATGCACTTCGC
CGTCCTGGGGCTGGGCGACACCAACTATGACAAGTTTTGTCACATGGGCA
AGAGCATGGACGCGCGCTTGGGGGAGGTGGGGGGACGCCGAGTGTGCAAG
GTGGGGATGGCTGACGAGGCCATGGGGTTGGAAGGGACTGTGGAACCTTG
GATTGACGCCTTGTACCCGGCCTTGCTCAAGGTGTTGGGTCTCGATGGGC
AAGCAGGAGCAGGAGCAGTGGAGGCCTCACCACCGACGACGACGACTGCG
ACGAGTGCGACGACGGCGAGTGTTGGGAATGCTGCTGCTCCTGCTGCTGG
TGTCGAGACCCCTGCAGTGGTAGCTGCGACATCTGTCGCGGCGGCCGCTG
CCCCGACGGTCAATGGCAAAGAGGTTGATAAGGAGGAGGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAAAGGAGGACGCGGCTACAGCAGCAGTAACAAC
GGCAGTGGAAGCCAAGCTAACCCTGAAGGAACAGAAAGCCATGCATCAAA
ACCCCACAGAAATGTCAGGGCCGCAAATGCAAACGCGGGGGGGGGGCGCT
GACCAAGGAAAGTGGAGCCAGATGGTTGGCTGA
back to top
Synonyms
Publications