jgi.p|Nanoce1779_2|577973, mRNA_1803 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|577973
Unique Name	mRNA_1803
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1777
Alignment location	scaffold_4:39025..40823 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	578059
Track	FilteredModels2
ProteinId	577973

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:39025..40823 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577973	gene_1803	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577973	mRNA_1803-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1803	CDS_1803	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:39025..40823+
coding sequence from alignment at scaffold_4:39025..40823+

mRNA sequence

>mRNA_1803 ID=mRNA_1803|Name=jgi.p|Nanoce1779_2|577973|organism=Nannochloropsis oceanica|type=mRNA|length=1777bp
AGCAAGAGATAGAGGAGGAAGGAGGGGAGGAAGACAATAAAAAGCAAGGT
GCGGGGGCGGAAGGTGAGGAGGAGGGAGGGAAGGAAGAAGAGAAAGGAGA
GAACAAGCAGGGTAGAGAAGAAGAGGAGGAGGAGGGAATGGACGTGGACG
ACAACGAGGACGGGCCCTCGAGGTGTTCGGCGGAGGAAGAGCGGAAATTA
GCTGCAACTACAGCGTCTAGCTCCTCCTCGTCCTCCACCCCCAAGGCCCA
CAAGGCCAAGGGTGGGAGAGGCGGACAAACAGGGGAAAACGACCGAGGCG
AGTCGCTGCCTGCCCCGCTGCCGCCGCCGCCAGTGCCCGAGGCAGGCGAG
GAAGAGGAGAAGGGAACGGACAAAGGGAATGGGGATGGTATTGCTGAGGG
CAGTAATGATGTAGAGGAAGAGGACGAGATGGGCACGGGCGGGGCCGGGG
CGAAGATCACCACAAACCAAGCCGCACTTCATCTACAGGACGCTCCACCC
GAGGAGGAGCAGCAGCAGCATCGACAACAACAACAGTCTCATGCCTCCAC
CAAAAACAATGACGAGGATGAGAAGGAAGAAGGGGAGGAGGAAGAGGTAC
TGGATCTCCGTCAAGCCGTGCAAGGCCTCTGGCACGAGCACCCCCACCCG
TCCTCGGATACCACCATGGAGCTTTGGTCCCGCTATCGGTCAGCTTCAGC
CCCTCTTGCTCTGCGGTTGTGTGAGCAACTCCGACTTGTTCTAGAGCCAC
TGGTGGCGAGCAAGCTGGCGGGCGACTACAGAAGTGGGAAGAGGATCAAT
ATGCGGAGGGTCATCCCGTACATCGCCTCCGGGTATCGAAAGGATAAGAT
TTGGCTGCGACGGACCAAACCGGCCAAGAGGGCGTATCAAGTGCTGCTGG
CAATTGACGACTCGGGGTCGATGAAGCATTTTGAGGCAGAGGACATGGCG
CTGACAGCTCTTGCTACCTTAGCGTCTGGAATGTCGGCCTTGGAGATAGG
GGAATTGGGGGTGGCAGCATTTGGGGAGAATCTCAAGTTGGTACACGGCT
TCGGGGAGCCTTGGACGGAGGATGCTGGGGCAAGGGTGTTATCATCGTTT
ACTTTTGAGCAGGAGGCGACGGACGGGGCAGCGATGTTGGAGAGTCGGCG
GGGGGGGGCGCGGCAACGACGGTCTTCGGCAATGGGGCTGCCGGAGAAGA
TTTTGCAGTTAGTGTTTGTGGTGTCAGATGGGTCATTTGAACGGGGGGAT
AAGGCAACGTTGAGGAGATTGGTGAGGGAGATGGCGGAGAAGGGTCAGTT
GCTCGTGTTGTTGATTGTGGACAAGTCCATCGAGGAGAGGCAGGAGGTGG
AGTATTCGGTGGCGGGCGGGGTAAAATTGTCGCGTTATTTGGATTCGTAC
CCGTTCCCGTATTACGTGGTGTTGAGAGACGTACAGGCGCTGCCGGAAGT
GATGGCGGACGCGTTGAAGCAGTGGTTTGAGCTTTTGAGTCGTGGATAAA
GTTGGAATAGAGAGGGGTGGTAGTGGTGGCGATGGGTGGTGGCGGGAATA
AAATAAAGAGGAGGGGAAGCAAAGGAGACTGAAAAGGGAAAATTCAGAAG
CATGTATGCATGTATGTATTCATTTTATATAGTTTACCCGTGCGTATTAA
AAAAAGCATAATATAATCATTTTTTCTCCAAAAGGGAAGAGAAAGAGGAA
TTAAAATAGAGTAAAATATAAGTATAGACATGCGGTAGATAATAAAAAGA
AAAAATACAATCGGTATGACGAGCACG

protein sequence of jgi.p|Nanoce1779_2|577973

>mRNA_1803-protein ID=mRNA_1803-protein|Name=jgi.p|Nanoce1779_2|577973|organism=Nannochloropsis oceanica|type=polypeptide|length=454bp
MDVDDNEDGPSRCSAEEERKLAATTASSSSSSSTPKAHKAKGGRGGQTGE
NDRGESLPAPLPPPPVPEAGEEEEKGTDKGNGDGIAEGSNDVEEEDEMGT
GGAGAKITTNQAALHLQDAPPEEEQQQHRQQQQSHASTKNNDEDEKEEGE
EEEVLDLRQAVQGLWHEHPHPSSDTTMELWSRYRSASAPLALRLCEQLRL
VLEPLVASKLAGDYRSGKRINMRRVIPYIASGYRKDKIWLRRTKPAKRAY
QVLLAIDDSGSMKHFEAEDMALTALATLASGMSALEIGELGVAAFGENLK
LVHGFGEPWTEDAGARVLSSFTFEQEATDGAAMLESRRGGARQRRSSAMG
LPEKILQLVFVVSDGSFERGDKATLRRLVREMAEKGQLLVLLIVDKSIEE
RQEVEYSVAGGVKLSRYLDSYPFPYYVVLRDVQALPEVMADALKQWFELL
SRG*

mRNA from alignment at scaffold_4:39025..40823+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1803 ID=mRNA_1803|Name=jgi.p|Nanoce1779_2|577973|organism=Nannochloropsis oceanica|type=mRNA|length=1799bp|location=Sequence derived from alignment at scaffold_4:39025..40823+ (Nannochloropsis oceanica)
AGCAAGAGATAGAGGAGGAAGGAGGGGAGGAAGACAATAAAAAGCAAGGT
GCGGGGGCGGAAGGTGAGGAGGAGGGAGGGAAGGAAGAAGAGAAAGGAGA
GAACAAGCAGGGTAGAGAAGAAGAGGAGGAGGAGGGAATGGACGTGGACG
ACAACGAGGACGGGCCCTCGAGGTGTTCGGCGGAGGAAGAGCGGAAATTA
GCTGCAACTACAGCGTCTAGCTCCTCCTCGTCCTCCACCCCCAAGGCCCA
CAAGGCCAAGGGTGGGAGAGGCGGACAAACAGGGGAAAACGACCGAGGCG
AGTCGCTGCCTGCCCCGCTGCCGCCGCCGCCAGTGCCCGAGGCAGGCGAG
GAAGAGGAGAAGGGAACGGACAAAGGGAATGGGGATGGTATTGCTGAGGG
CAGTAATGATGTAGAGGAAGAGGACGAGATGGGCACGGGCGGGGCCGGGG
CGAAGATCACCACAAACCAAGCCGCACTTCATCTACAGGACGCTCCACCC
GAGGAGGAGCAGCAGCAGCATCGACAACAACAACAGTCTCATGCCTCCAC
CAAAAACAATGACGAGGATGAGAAGGAAGAAGGGGAGGAGGAAGAGGTAC
TGGATCTCCGTCAAGCCGTGCAAGGCCTCTGGCACGAGCACCCCCACCCG
TCCTCGGATACCACCATGGAGCTTTGGTCCCGCTATCGGTCAGCTTCAGC
CCCTCTTGCTCTGCGGTTGTGTGAGCAACTCCGACTTGTTCTAGAGCCAC
TGGTGGCGAGCAAGCTGGCGGGCGACTACAGAAGTGGGAAGAGGATCAAT
ATGCGGAGGGTCATCCCGTACATCGCCTCCGGGTATCGAAAGGATAAGAT
TTGGCTGCGACGGACCAAACCGGCCAAGAGGGCGTATCAAGTGCTGCTGG
CAATTGACGACTCGGGGTCGATGAAGCATTTTGAGGCAGAGGACATGGCG
CTGACAGCTCTTGCTACCTTAGCGTCTGGAATGTCGGCCTTGGAGATAGG
GGAATTGGGGGTGGCAGCATTTGGGGAGAATCTCAAGTTGGTACACGGCT
TCGGGGAGCCTTGGACGGAGGATGCTGGGGCAAGGGTGTTATCATCGTTT
ACTTTTGAGCAGGAGGCGACGGACGGGGCAGCGATGTTGGAGAGTGTGTC
GGCGGCCTTGGAGGCAGCGGCGGGGGGGGGCGCGGCAACGACGGTCTTCG
GCAATGGGGCTGCCGGAGAAGATTTTGCAGTTAGTGTTTGTGGTGTCAGA
TGGGTCATTTGAACGGGGGGATAAGGCAACGTTGAGGAGATTGGTGAGGG
AGATGGCGGAGAAGGGTCAGTTGCTCGTGTTGTTGATTGTGGACAAGTCC
ATCGAGGAGAGGCAGGAGGTGGAGTATTCGGTGGCGGGCGGGGTAAAATT
GTCGCGTTATTTGGATTCGTACCCGTTCCCGTATTACGTGGTGTTGAGAG
ACGTACAGGCGCTGCCGGAAGTGATGGCGGACGCGTTGAAGCAGTGGTTT
GAGCTTTTGAGTCGTGGATAAAGTTGGAATAGAGAGGGGTGGTAGTGGTG
GCGATGGGTGGTGGCGGGAATAAAATAAAGAGGAGGGGAAGCAAAGGAGA
CTGAAAAGGGAAAATTCAGAAGCATGTATGCATGTATGTATTCATTTTAT
ATAGTTTACCCGTGCGTATTAAAAAAAGCATAATATAATCATTTTTTCTC
CAAAAGGGAAGAGAAAGAGGAATTAAAATAGAGTAAAATATAAGTATAGA
CATGCGGTAGATAATAAAAAGAAAAAATACAATCGGTATGACGAGCACG

Coding sequence (CDS) from alignment at scaffold_4:39025..40823+

>mRNA_1803 ID=mRNA_1803|Name=jgi.p|Nanoce1779_2|577973|organism=Nannochloropsis oceanica|type=CDS|length=2724bp|location=Sequence derived from alignment at scaffold_4:39025..40823+ (Nannochloropsis oceanica)
ATGGACGTGGACGACAACGAGGACGGGCCCTCGAGGTGTTCGGCGGAGGA
AGAGCGGAAATTAGCTGCAACTACAGCGTCTAGCTCCTCCTCGTCCTCCA
CCCCCAAGGCCCACAAGGCCAAGGGTGGGAGAGGCGGACAAACAGGGGAA
AACGACCGAGGCGAGTCGCTGCCTGCCCCGCTGCCGCCGCCGCCAGTGCC
CGAGGCAGGCGAGGAAGAGGAGAAGGGAACGGACAAAGGGAATGGGGATG
GTATTGCTGAGGGCAGTAATGATGTAGAGGAAGAGGACGAGATGGGCACG
GGCGGGGCCGGGGCGAAGATCACCACAAACCAAGCCGCACTTCATCTACA
GGACGCTCCACCCGAGGAGGAGCAGCAGCAGCATCGACAACAACAACAGT
CTCATGCCTCCACCAAAAACAATGACGAGGATGAGAAGGAAGAAGGGGAG
GAGGAAGAGGTACTGGATCTCCGTCAAGCCGTGCAAGGCCTCTGGCACGA
GCACCCCCACCCGTCCTCGGATACCACCATGGAGCTTTGGTCCCGCTATC
GGTCAGCTTCAGCCCCTCTTGCTCTGCGGTTGTGTGAGCAACTCCGACTT
GTTCTAGAGCCACTGGTGGCGAGCAAGCTGGCGGGCGACTACAGAAGTGG
GAAGAGGATCAATATGCGGAGGGTCATCCCGTACATCGCCTCCGGGTATC
GAAAGGATAAGATTTGGCTGCGACGGACCAAACCGGCCAAGAGGGCGTAT
CAAGTGCTGCTGGCAATTGACGACTCGGGGTCGATGAAGCATTTTGAGGC
AGAGGACATGGCGCTGACAGCTCTTGCTACCTTAGCGTCTGGAATGTCGG
CCTTGGAGATAGGGGAATTGGGGGTGGCAGCATTTGGGGAGAATCTCAAG
TTGGTACACGGCTTCGGGGAGCCTTGGACGGAGGATGCTGGGGCAAGGGT
GTTATCATCGTTTACTTTTGAGCAGGAGGCGACGGACGGGGCAGCGATGT
TGGAGAGTCGGCGGGGGGGGGCGCGGCAACGACGGTCTTCGGCAATGGGG
CTGCCGGAGAAGATTTTGCAGTTAGTGTTTGTGGTGTCAGATGGGTCATT
TGAACGGGGGGATAAGGCAACGTTGAGGAGATTGGTGAGGGAGATGGCGG
AGAAGGGTCAGTTGCTCGTGTTGTTGATTGTGGACAAGTCCATCGAGGAG
AGGCAGGAGGTGGAGTATTCGGTGGCGGGCGGGGTAAAATTGTCGCGTTA
TTTGGATTCGTACCCGTTCCCGTATTACGTGGTGTTGAGAGACGTACAGG
CGCTGCCGGAAGTGATGGCGGACGCGTTGAAGCAGTGGTTTGAGCTTTTG
AGTCGTGGATAAATGGACGTGGACGACAACGAGGACGGGCCCTCGAGGTG
TTCGGCGGAGGAAGAGCGGAAATTAGCTGCAACTACAGCGTCTAGCTCCT
CCTCGTCCTCCACCCCCAAGGCCCACAAGGCCAAGGGTGGGAGAGGCGGA
CAAACAGGGGAAAACGACCGAGGCGAGTCGCTGCCTGCCCCGCTGCCGCC
GCCGCCAGTGCCCGAGGCAGGCGAGGAAGAGGAGAAGGGAACGGACAAAG
GGAATGGGGATGGTATTGCTGAGGGCAGTAATGATGTAGAGGAAGAGGAC
GAGATGGGCACGGGCGGGGCCGGGGCGAAGATCACCACAAACCAAGCCGC
ACTTCATCTACAGGACGCTCCACCCGAGGAGGAGCAGCAGCAGCATCGAC
AACAACAACAGTCTCATGCCTCCACCAAAAACAATGACGAGGATGAGAAG
GAAGAAGGGGAGGAGGAAGAGGTACTGGATCTCCGTCAAGCCGTGCAAGG
CCTCTGGCACGAGCACCCCCACCCGTCCTCGGATACCACCATGGAGCTTT
GGTCCCGCTATCGGTCAGCTTCAGCCCCTCTTGCTCTGCGGTTGTGTGAG
CAACTCCGACTTGTTCTAGAGCCACTGGTGGCGAGCAAGCTGGCGGGCGA
CTACAGAAGTGGGAAGAGGATCAATATGCGGAGGGTCATCCCGTACATCG
CCTCCGGGTATCGAAAGGATAAGATTTGGCTGCGACGGACCAAACCGGCC
AAGAGGGCGTATCAAGTGCTGCTGGCAATTGACGACTCGGGGTCGATGAA
GCATTTTGAGGCAGAGGACATGGCGCTGACAGCTCTTGCTACCTTAGCGT
CTGGAATGTCGGCCTTGGAGATAGGGGAATTGGGGGTGGCAGCATTTGGG
GAGAATCTCAAGTTGGTACACGGCTTCGGGGAGCCTTGGACGGAGGATGC
TGGGGCAAGGGTGTTATCATCGTTTACTTTTGAGCAGGAGGCGACGGACG
GGGCAGCGATGTTGGAGAGTCGGCGGGGGGGGGCGCGGCAACGACGGTCT
TCGGCAATGGGGCTGCCGGAGAAGATTTTGCAGTTAGTGTTTGTGGTGTC
AGATGGGTCATTTGAACGGGGGGATAAGGCAACGTTGAGGAGATTGGTGA
GGGAGATGGCGGAGAAGGGTCAGTTGCTCGTGTTGTTGATTGTGGACAAG
TCCATCGAGGAGAGGCAGGAGGTGGAGTATTCGGTGGCGGGCGGGGTAAA
ATTGTCGCGTTATTTGGATTCGTACCCGTTCCCGTATTACGTGGTGTTGA
GAGACGTACAGGCGCTGCCGGAAGTGATGGCGGACGCGTTGAAGCAGTGG
TTTGAGCTTTTGAGTCGTGGATAA

Synonyms

Publications