jgi.p|Nanoce1779_2|524567, mRNA_1802 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|524567
Unique NamemRNA_1802
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1443
Alignment locationscaffold_4:33178..34620 +

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Properties
Property NameValue
TranscriptId524653
TrackFilteredModels2
ProteinId524567
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:33178..34620 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|524567gene_1802Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|524567mRNA_1802-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1802CDS_1802Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1802 ID=mRNA_1802|Name=jgi.p|Nanoce1779_2|524567|organism=Nannochloropsis oceanica|type=mRNA|length=1443bp
ATGTCGGCCGCCACGGTGGCAGCATCTGTACGGAATGCAGAGAGGGAGGC
ATACCACCCTGTCCAAGCCTTAGCGCAGTTCCCTTTCCCCGTTGTAAGCG
AGGAGGTGAAGGAGCACAACGATGACACAACTTGCCTAGCGGGTGCATTG
GCTCCTTCCTCCCTTCCGGCCAAGCTACATGTTCCTGCCCTAATTGCCCG
TCTTTGTCGCTTGGAAGTGCAATGGCACGCCACGCATGCTCCTGATGTCC
GCACGCGTCTCCGTGCGGAAGTTGAAGCTTTGTTGAGTCAGTTGAGCGAG
GCGTGGGTGGCTGCAGAGGAGAAGGCGAAGGAGGAAAGGGCCAAGAGGGA
GAGTATCTTTCGACAGCGGGAGGAAGAGGAGGCGATGAGGGAAGGAGAAG
ATGCGGCAGCTATCGCAGCGGTGGCCCGCGAAGAGGCTGCTGAGCTCCAG
CGGTTCTTCCCTGGTGAGGAAGGGGGGGAGGAACTGCCTGAGGGTGGATT
TGCTGGGTCTGCGGATGGTGGCATCAGTGGCAGCAGTAGCAGCAGTTGTA
GTGCCTTGGGATTGACAGACGAGCAAGTTTCGGTCATTGTTGGGGCGTGG
TCTCGGCTGGCGGTGGGTGATGGTAGCAGCAGTAGCATCAGCAGCAACAG
TTTTGTGCAGTATCACTCGGTGATGCGACGGCTGGCCTTCCGTCTCTCCT
ACTCCTTGGCCTCGACCTTGACTATGCCCGCAGACCTTGACGGCCCCGCC
TCCCCAAGCAGTAGCAGCGGTGAGAGTGGATGGCAGGGGGCACTGGTCCT
CGCTCCGGGCCTGGATGATGCGTTGGAGGGATCCCATCTACTTGCTCTGT
CCATTGCTGTCGAGGGTCTAGGTGCTGCCGTCCCATCGGTTCTTGTGGCT
ACATCTACGCTGCGCAATGGGAGGAAGAAGAAGAGAATGGTGAACAAGAG
CTGGATGAAAGAGGAGGAGGAAGAAGCGGAGGACAAGGCGGGATTAGGGT
TGGAAGGTTTGCTTCGGGCCGGCCTCGTCGAAGAGGCGGAAGGCAGCACC
ACCAATATTGGAAGTCGCCGTCTTTACGACTTTCATCACGACCCCGCCCC
CATTTCGGAGGTTGCTTTAGTCCTTCCTGTCCTCCATCCACTTCTCACAC
GCCTCGGCTCCCTCTTAAAGCAGTGGCCGGGACACGCCGGCTTGGTGCAA
GCAACCCGAGCGGCTGATAAAGTTCGTCATCTTGGCGTGCGCTCCTCTCT
CTCCCGCCTCCTCCTTGCTTTGGAAGCCGCCCTGGCAGCAGCGCAGGAAT
GGGAGGCCTACGCGAGCAAGGCCGCGAGTCTGAGTGTAGAGATGGCTGCT
GTGGCTACGCTTGTGATTCGATGGAGAAAGATCGAGTTGGAGACATGGCC
AGACCTGCTGGCATTGCAGGAGAGGCAGGCGGCGAGTAAAGCG
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protein sequence of jgi.p|Nanoce1779_2|524567

>mRNA_1802-protein ID=mRNA_1802-protein|Name=jgi.p|Nanoce1779_2|524567|organism=Nannochloropsis oceanica|type=polypeptide|length=481bp
MSAATVAASVRNAEREAYHPVQALAQFPFPVVSEEVKEHNDDTTCLAGAL
APSSLPAKLHVPALIARLCRLEVQWHATHAPDVRTRLRAEVEALLSQLSE
AWVAAEEKAKEERAKRESIFRQREEEEAMREGEDAAAIAAVAREEAAELQ
RFFPGEEGGEELPEGGFAGSADGGISGSSSSSCSALGLTDEQVSVIVGAW
SRLAVGDGSSSSISSNSFVQYHSVMRRLAFRLSYSLASTLTMPADLDGPA
SPSSSSGESGWQGALVLAPGLDDALEGSHLLALSIAVEGLGAAVPSVLVA
TSTLRNGRKKKRMVNKSWMKEEEEEAEDKAGLGLEGLLRAGLVEEAEGST
TNIGSRRLYDFHHDPAPISEVALVLPVLHPLLTRLGSLLKQWPGHAGLVQ
ATRAADKVRHLGVRSSLSRLLLALEAALAAAQEWEAYASKAASLSVEMAA
VATLVIRWRKIELETWPDLLALQERQAASKA
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mRNA from alignment at scaffold_4:33178..34620+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1802 ID=mRNA_1802|Name=jgi.p|Nanoce1779_2|524567|organism=Nannochloropsis oceanica|type=mRNA|length=1443bp|location=Sequence derived from alignment at scaffold_4:33178..34620+ (Nannochloropsis oceanica)
ATGTCGGCCGCCACGGTGGCAGCATCTGTACGGAATGCAGAGAGGGAGGC ATACCACCCTGTCCAAGCCTTAGCGCAGTTCCCTTTCCCCGTTGTAAGCG AGGAGGTGAAGGAGCACAACGATGACACAACTTGCCTAGCGGGTGCATTG GCTCCTTCCTCCCTTCCGGCCAAGCTACATGTTCCTGCCCTAATTGCCCG TCTTTGTCGCTTGGAAGTGCAATGGCACGCCACGCATGCTCCTGATGTCC GCACGCGTCTCCGTGCGGAAGTTGAAGCTTTGTTGAGTCAGTTGAGCGAG GCGTGGGTGGCTGCAGAGGAGAAGGCGAAGGAGGAAAGGGCCAAGAGGGA GAGTATCTTTCGACAGCGGGAGGAAGAGGAGGCGATGAGGGAAGGAGAAG ATGCGGCAGCTATCGCAGCGGTGGCCCGCGAAGAGGCTGCTGAGCTCCAG CGGTTCTTCCCTGGTGAGGAAGGGGGGGAGGAACTGCCTGAGGGTGGATT TGCTGGGTCTGCGGATGGTGGCATCAGTGGCAGCAGTAGCAGCAGTTGTA GTGCCTTGGGATTGACAGACGAGCAAGTTTCGGTCATTGTTGGGGCGTGG TCTCGGCTGGCGGTGGGTGATGGTAGCAGCAGTAGCATCAGCAGCAACAG TTTTGTGCAGTATCACTCGGTGATGCGACGGCTGGCCTTCCGTCTCTCCT ACTCCTTGGCCTCGACCTTGACTATGCCCGCAGACCTTGACGGCCCCGCC TCCCCAAGCAGTAGCAGCGGTGAGAGTGGATGGCAGGGGGCACTGGTCCT CGCTCCGGGCCTGGATGATGCGTTGGAGGGATCCCATCTACTTGCTCTGT CCATTGCTGTCGAGGGTCTAGGTGCTGCCGTCCCATCGGTTCTTGTGGCT ACATCTACGCTGCGCAATGGGAGGAAGAAGAAGAGAATGGTGAACAAGAG CTGGATGAAAGAGGAGGAGGAAGAAGCGGAGGACAAGGCGGGATTAGGGT TGGAAGGTTTGCTTCGGGCCGGCCTCGTCGAAGAGGCGGAAGGCAGCACC ACCAATATTGGAAGTCGCCGTCTTTACGACTTTCATCACGACCCCGCCCC CATTTCGGAGGTTGCTTTAGTCCTTCCTGTCCTCCATCCACTTCTCACAC GCCTCGGCTCCCTCTTAAAGCAGTGGCCGGGACACGCCGGCTTGGTGCAA GCAACCCGAGCGGCTGATAAAGTTCGTCATCTTGGCGTGCGCTCCTCTCT CTCCCGCCTCCTCCTTGCTTTGGAAGCCGCCCTGGCAGCAGCGCAGGAAT GGGAGGCCTACGCGAGCAAGGCCGCGAGTCTGAGTGTAGAGATGGCTGCT GTGGCTACGCTTGTGATTCGATGGAGAAAGATCGAGTTGGAGACATGGCC AGACCTGCTGGCATTGCAGGAGAGGCAGGCGGCGAGTAAAGCG
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Coding sequence (CDS) from alignment at scaffold_4:33178..34620+

>mRNA_1802 ID=mRNA_1802|Name=jgi.p|Nanoce1779_2|524567|organism=Nannochloropsis oceanica|type=CDS|length=1443bp|location=Sequence derived from alignment at scaffold_4:33178..34620+ (Nannochloropsis oceanica)
ATGTCGGCCGCCACGGTGGCAGCATCTGTACGGAATGCAGAGAGGGAGGC
ATACCACCCTGTCCAAGCCTTAGCGCAGTTCCCTTTCCCCGTTGTAAGCG
AGGAGGTGAAGGAGCACAACGATGACACAACTTGCCTAGCGGGTGCATTG
GCTCCTTCCTCCCTTCCGGCCAAGCTACATGTTCCTGCCCTAATTGCCCG
TCTTTGTCGCTTGGAAGTGCAATGGCACGCCACGCATGCTCCTGATGTCC
GCACGCGTCTCCGTGCGGAAGTTGAAGCTTTGTTGAGTCAGTTGAGCGAG
GCGTGGGTGGCTGCAGAGGAGAAGGCGAAGGAGGAAAGGGCCAAGAGGGA
GAGTATCTTTCGACAGCGGGAGGAAGAGGAGGCGATGAGGGAAGGAGAAG
ATGCGGCAGCTATCGCAGCGGTGGCCCGCGAAGAGGCTGCTGAGCTCCAG
CGGTTCTTCCCTGGTGAGGAAGGGGGGGAGGAACTGCCTGAGGGTGGATT
TGCTGGGTCTGCGGATGGTGGCATCAGTGGCAGCAGTAGCAGCAGTTGTA
GTGCCTTGGGATTGACAGACGAGCAAGTTTCGGTCATTGTTGGGGCGTGG
TCTCGGCTGGCGGTGGGTGATGGTAGCAGCAGTAGCATCAGCAGCAACAG
TTTTGTGCAGTATCACTCGGTGATGCGACGGCTGGCCTTCCGTCTCTCCT
ACTCCTTGGCCTCGACCTTGACTATGCCCGCAGACCTTGACGGCCCCGCC
TCCCCAAGCAGTAGCAGCGGTGAGAGTGGATGGCAGGGGGCACTGGTCCT
CGCTCCGGGCCTGGATGATGCGTTGGAGGGATCCCATCTACTTGCTCTGT
CCATTGCTGTCGAGGGTCTAGGTGCTGCCGTCCCATCGGTTCTTGTGGCT
ACATCTACGCTGCGCAATGGGAGGAAGAAGAAGAGAATGGTGAACAAGAG
CTGGATGAAAGAGGAGGAGGAAGAAGCGGAGGACAAGGCGGGATTAGGGT
TGGAAGGTTTGCTTCGGGCCGGCCTCGTCGAAGAGGCGGAAGGCAGCACC
ACCAATATTGGAAGTCGCCGTCTTTACGACTTTCATCACGACCCCGCCCC
CATTTCGGAGGTTGCTTTAGTCCTTCCTGTCCTCCATCCACTTCTCACAC
GCCTCGGCTCCCTCTTAAAGCAGTGGCCGGGACACGCCGGCTTGGTGCAA
GCAACCCGAGCGGCTGATAAAGTTCGTCATCTTGGCGTGCGCTCCTCTCT
CTCCCGCCTCCTCCTTGCTTTGGAAGCCGCCCTGGCAGCAGCGCAGGAAT
GGGAGGCCTACGCGAGCAAGGCCGCGAGTCTGAGTGTAGAGATGGCTGCT
GTGGCTACGCTTGTGATTCGATGGAGAAAGATCGAGTTGGAGACATGGCC
AGACCTGCTGGCATTGCAGGAGAGGCAGGCGGCGAGTAAAGCG
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Synonyms
Publications