jgi.p|Nanoce1779_2|524567, mRNA_1802 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|524567
Unique Name	mRNA_1802
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1443
Alignment location	scaffold_4:33178..34620 +

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Properties


Property Name	Value
TranscriptId	524653
Track	FilteredModels2
ProteinId	524567

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:33178..34620 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|524567	gene_1802	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|524567	mRNA_1802-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1802	CDS_1802	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:33178..34620+
coding sequence from alignment at scaffold_4:33178..34620+

mRNA sequence

>mRNA_1802 ID=mRNA_1802|Name=jgi.p|Nanoce1779_2|524567|organism=Nannochloropsis oceanica|type=mRNA|length=1443bp
ATGTCGGCCGCCACGGTGGCAGCATCTGTACGGAATGCAGAGAGGGAGGC
ATACCACCCTGTCCAAGCCTTAGCGCAGTTCCCTTTCCCCGTTGTAAGCG
AGGAGGTGAAGGAGCACAACGATGACACAACTTGCCTAGCGGGTGCATTG
GCTCCTTCCTCCCTTCCGGCCAAGCTACATGTTCCTGCCCTAATTGCCCG
TCTTTGTCGCTTGGAAGTGCAATGGCACGCCACGCATGCTCCTGATGTCC
GCACGCGTCTCCGTGCGGAAGTTGAAGCTTTGTTGAGTCAGTTGAGCGAG
GCGTGGGTGGCTGCAGAGGAGAAGGCGAAGGAGGAAAGGGCCAAGAGGGA
GAGTATCTTTCGACAGCGGGAGGAAGAGGAGGCGATGAGGGAAGGAGAAG
ATGCGGCAGCTATCGCAGCGGTGGCCCGCGAAGAGGCTGCTGAGCTCCAG
CGGTTCTTCCCTGGTGAGGAAGGGGGGGAGGAACTGCCTGAGGGTGGATT
TGCTGGGTCTGCGGATGGTGGCATCAGTGGCAGCAGTAGCAGCAGTTGTA
GTGCCTTGGGATTGACAGACGAGCAAGTTTCGGTCATTGTTGGGGCGTGG
TCTCGGCTGGCGGTGGGTGATGGTAGCAGCAGTAGCATCAGCAGCAACAG
TTTTGTGCAGTATCACTCGGTGATGCGACGGCTGGCCTTCCGTCTCTCCT
ACTCCTTGGCCTCGACCTTGACTATGCCCGCAGACCTTGACGGCCCCGCC
TCCCCAAGCAGTAGCAGCGGTGAGAGTGGATGGCAGGGGGCACTGGTCCT
CGCTCCGGGCCTGGATGATGCGTTGGAGGGATCCCATCTACTTGCTCTGT
CCATTGCTGTCGAGGGTCTAGGTGCTGCCGTCCCATCGGTTCTTGTGGCT
ACATCTACGCTGCGCAATGGGAGGAAGAAGAAGAGAATGGTGAACAAGAG
CTGGATGAAAGAGGAGGAGGAAGAAGCGGAGGACAAGGCGGGATTAGGGT
TGGAAGGTTTGCTTCGGGCCGGCCTCGTCGAAGAGGCGGAAGGCAGCACC
ACCAATATTGGAAGTCGCCGTCTTTACGACTTTCATCACGACCCCGCCCC
CATTTCGGAGGTTGCTTTAGTCCTTCCTGTCCTCCATCCACTTCTCACAC
GCCTCGGCTCCCTCTTAAAGCAGTGGCCGGGACACGCCGGCTTGGTGCAA
GCAACCCGAGCGGCTGATAAAGTTCGTCATCTTGGCGTGCGCTCCTCTCT
CTCCCGCCTCCTCCTTGCTTTGGAAGCCGCCCTGGCAGCAGCGCAGGAAT
GGGAGGCCTACGCGAGCAAGGCCGCGAGTCTGAGTGTAGAGATGGCTGCT
GTGGCTACGCTTGTGATTCGATGGAGAAAGATCGAGTTGGAGACATGGCC
AGACCTGCTGGCATTGCAGGAGAGGCAGGCGGCGAGTAAAGCG

protein sequence of jgi.p|Nanoce1779_2|524567

>mRNA_1802-protein ID=mRNA_1802-protein|Name=jgi.p|Nanoce1779_2|524567|organism=Nannochloropsis oceanica|type=polypeptide|length=481bp
MSAATVAASVRNAEREAYHPVQALAQFPFPVVSEEVKEHNDDTTCLAGAL
APSSLPAKLHVPALIARLCRLEVQWHATHAPDVRTRLRAEVEALLSQLSE
AWVAAEEKAKEERAKRESIFRQREEEEAMREGEDAAAIAAVAREEAAELQ
RFFPGEEGGEELPEGGFAGSADGGISGSSSSSCSALGLTDEQVSVIVGAW
SRLAVGDGSSSSISSNSFVQYHSVMRRLAFRLSYSLASTLTMPADLDGPA
SPSSSSGESGWQGALVLAPGLDDALEGSHLLALSIAVEGLGAAVPSVLVA
TSTLRNGRKKKRMVNKSWMKEEEEEAEDKAGLGLEGLLRAGLVEEAEGST
TNIGSRRLYDFHHDPAPISEVALVLPVLHPLLTRLGSLLKQWPGHAGLVQ
ATRAADKVRHLGVRSSLSRLLLALEAALAAAQEWEAYASKAASLSVEMAA
VATLVIRWRKIELETWPDLLALQERQAASKA

mRNA from alignment at scaffold_4:33178..34620+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1802 ID=mRNA_1802|Name=jgi.p|Nanoce1779_2|524567|organism=Nannochloropsis oceanica|type=mRNA|length=1443bp|location=Sequence derived from alignment at scaffold_4:33178..34620+ (Nannochloropsis oceanica)
ATGTCGGCCGCCACGGTGGCAGCATCTGTACGGAATGCAGAGAGGGAGGC
ATACCACCCTGTCCAAGCCTTAGCGCAGTTCCCTTTCCCCGTTGTAAGCG
AGGAGGTGAAGGAGCACAACGATGACACAACTTGCCTAGCGGGTGCATTG
GCTCCTTCCTCCCTTCCGGCCAAGCTACATGTTCCTGCCCTAATTGCCCG
TCTTTGTCGCTTGGAAGTGCAATGGCACGCCACGCATGCTCCTGATGTCC
GCACGCGTCTCCGTGCGGAAGTTGAAGCTTTGTTGAGTCAGTTGAGCGAG
GCGTGGGTGGCTGCAGAGGAGAAGGCGAAGGAGGAAAGGGCCAAGAGGGA
GAGTATCTTTCGACAGCGGGAGGAAGAGGAGGCGATGAGGGAAGGAGAAG
ATGCGGCAGCTATCGCAGCGGTGGCCCGCGAAGAGGCTGCTGAGCTCCAG
CGGTTCTTCCCTGGTGAGGAAGGGGGGGAGGAACTGCCTGAGGGTGGATT
TGCTGGGTCTGCGGATGGTGGCATCAGTGGCAGCAGTAGCAGCAGTTGTA
GTGCCTTGGGATTGACAGACGAGCAAGTTTCGGTCATTGTTGGGGCGTGG
TCTCGGCTGGCGGTGGGTGATGGTAGCAGCAGTAGCATCAGCAGCAACAG
TTTTGTGCAGTATCACTCGGTGATGCGACGGCTGGCCTTCCGTCTCTCCT
ACTCCTTGGCCTCGACCTTGACTATGCCCGCAGACCTTGACGGCCCCGCC
TCCCCAAGCAGTAGCAGCGGTGAGAGTGGATGGCAGGGGGCACTGGTCCT
CGCTCCGGGCCTGGATGATGCGTTGGAGGGATCCCATCTACTTGCTCTGT
CCATTGCTGTCGAGGGTCTAGGTGCTGCCGTCCCATCGGTTCTTGTGGCT
ACATCTACGCTGCGCAATGGGAGGAAGAAGAAGAGAATGGTGAACAAGAG
CTGGATGAAAGAGGAGGAGGAAGAAGCGGAGGACAAGGCGGGATTAGGGT
TGGAAGGTTTGCTTCGGGCCGGCCTCGTCGAAGAGGCGGAAGGCAGCACC
ACCAATATTGGAAGTCGCCGTCTTTACGACTTTCATCACGACCCCGCCCC
CATTTCGGAGGTTGCTTTAGTCCTTCCTGTCCTCCATCCACTTCTCACAC
GCCTCGGCTCCCTCTTAAAGCAGTGGCCGGGACACGCCGGCTTGGTGCAA
GCAACCCGAGCGGCTGATAAAGTTCGTCATCTTGGCGTGCGCTCCTCTCT
CTCCCGCCTCCTCCTTGCTTTGGAAGCCGCCCTGGCAGCAGCGCAGGAAT
GGGAGGCCTACGCGAGCAAGGCCGCGAGTCTGAGTGTAGAGATGGCTGCT
GTGGCTACGCTTGTGATTCGATGGAGAAAGATCGAGTTGGAGACATGGCC
AGACCTGCTGGCATTGCAGGAGAGGCAGGCGGCGAGTAAAGCG

Coding sequence (CDS) from alignment at scaffold_4:33178..34620+

>mRNA_1802 ID=mRNA_1802|Name=jgi.p|Nanoce1779_2|524567|organism=Nannochloropsis oceanica|type=CDS|length=1443bp|location=Sequence derived from alignment at scaffold_4:33178..34620+ (Nannochloropsis oceanica)
ATGTCGGCCGCCACGGTGGCAGCATCTGTACGGAATGCAGAGAGGGAGGC
ATACCACCCTGTCCAAGCCTTAGCGCAGTTCCCTTTCCCCGTTGTAAGCG
AGGAGGTGAAGGAGCACAACGATGACACAACTTGCCTAGCGGGTGCATTG
GCTCCTTCCTCCCTTCCGGCCAAGCTACATGTTCCTGCCCTAATTGCCCG
TCTTTGTCGCTTGGAAGTGCAATGGCACGCCACGCATGCTCCTGATGTCC
GCACGCGTCTCCGTGCGGAAGTTGAAGCTTTGTTGAGTCAGTTGAGCGAG
GCGTGGGTGGCTGCAGAGGAGAAGGCGAAGGAGGAAAGGGCCAAGAGGGA
GAGTATCTTTCGACAGCGGGAGGAAGAGGAGGCGATGAGGGAAGGAGAAG
ATGCGGCAGCTATCGCAGCGGTGGCCCGCGAAGAGGCTGCTGAGCTCCAG
CGGTTCTTCCCTGGTGAGGAAGGGGGGGAGGAACTGCCTGAGGGTGGATT
TGCTGGGTCTGCGGATGGTGGCATCAGTGGCAGCAGTAGCAGCAGTTGTA
GTGCCTTGGGATTGACAGACGAGCAAGTTTCGGTCATTGTTGGGGCGTGG
TCTCGGCTGGCGGTGGGTGATGGTAGCAGCAGTAGCATCAGCAGCAACAG
TTTTGTGCAGTATCACTCGGTGATGCGACGGCTGGCCTTCCGTCTCTCCT
ACTCCTTGGCCTCGACCTTGACTATGCCCGCAGACCTTGACGGCCCCGCC
TCCCCAAGCAGTAGCAGCGGTGAGAGTGGATGGCAGGGGGCACTGGTCCT
CGCTCCGGGCCTGGATGATGCGTTGGAGGGATCCCATCTACTTGCTCTGT
CCATTGCTGTCGAGGGTCTAGGTGCTGCCGTCCCATCGGTTCTTGTGGCT
ACATCTACGCTGCGCAATGGGAGGAAGAAGAAGAGAATGGTGAACAAGAG
CTGGATGAAAGAGGAGGAGGAAGAAGCGGAGGACAAGGCGGGATTAGGGT
TGGAAGGTTTGCTTCGGGCCGGCCTCGTCGAAGAGGCGGAAGGCAGCACC
ACCAATATTGGAAGTCGCCGTCTTTACGACTTTCATCACGACCCCGCCCC
CATTTCGGAGGTTGCTTTAGTCCTTCCTGTCCTCCATCCACTTCTCACAC
GCCTCGGCTCCCTCTTAAAGCAGTGGCCGGGACACGCCGGCTTGGTGCAA
GCAACCCGAGCGGCTGATAAAGTTCGTCATCTTGGCGTGCGCTCCTCTCT
CTCCCGCCTCCTCCTTGCTTTGGAAGCCGCCCTGGCAGCAGCGCAGGAAT
GGGAGGCCTACGCGAGCAAGGCCGCGAGTCTGAGTGTAGAGATGGCTGCT
GTGGCTACGCTTGTGATTCGATGGAGAAAGATCGAGTTGGAGACATGGCC
AGACCTGCTGGCATTGCAGGAGAGGCAGGCGGCGAGTAAAGCG

Synonyms

Publications