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Properties
| Property Name | Value |
|---|
| TranscriptId | 578052 |
| Track | FilteredModels2 |
| ProteinId | 577966 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_4 | supercontig | scaffold_4:28949..32727 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1801 ID=mRNA_1801|Name=jgi.p|Nanoce1779_2|577966|organism=Nannochloropsis oceanica|type=mRNA|length=3779bp
CCCCACAACTCCTCTCTCCAACCGTGCGCCCCATGAGCGAGCTGCAGTTT
CAGTCTCCAAGACAATCAAACGTTCTTTCACAAGGGATTGCTTGGCTAGC
GGTGCTTCTCCTGGATCCACTGGCCGAGAAGGGACGAGCAGATGGAAACG
AAGCAGGCCTAGACGTACCCACGCCAGACCCGCCAAGTGGAAAGAGAGAG
GGACTGAAGACGAGGAAGAGGGAGAGGAGGAAGAATAAGGTGAGATGATA
GCAGCCATGGCCCGAAGTGCGGGCTGCAGCAACGCGGTCGCGGCAGAGGC
GAAACGATGATCCTTTGAGCGAGAGGACAGCAGGGCTATCTGCTCTAACC
AAGCCTCGACGGAGGGTGAGTCCGAGGGAGGTCCTTGGAAGAGGAGACGA
TGGAGGGCTTGCCAATCATCTGAGGCAAATGTCCCCTCAAACGCACCAAT
CATGTACAGCAATGCATGCTGAATGTGCCTCCCTTCCTCGTCGTCTATGT
CGACCTTGCCTACTTCCCTCCCACCTCCCATCGCCACCGACTCTTCCTGC
TTCTGCTCCTGCTGCACCTGCTCCATTTGTTGCTGTCTCACCAACGATAG
CAACCTCACTGCCTCCTGAAGTTGCTGTTGGCGTTGTTTCCCTCCCTCCA
GGGTTGTCAGACCCACCGAACCTCGATCTCCACCTCCTACCCGCAGCAGT
GACCAAACAAGACGAGACACCGGCGCAGCCAGCACCCACGAGGGGTCAGA
TGGTCCCAAAGGAACGAGGGAGGGAGCGATAGGAAGGGGGAAGGAAGAGG
GATTCTCTTCTTCCCCTGCAACCAGGCCCCAGTGGCCGTCCCGTCCTAGT
CCCTGCCAGAGGGCGTGGTGGAGGTTGGTGCGGAGGGTGGGGAGGAGGGA
TGCAATCAAGTGCCCGAGTGGATGAAGCTCCAGAATAACGCCACCTGTTC
TTGTTTCTCCGTCTCCTGTAAGTTCTGCTCCTCTCGCTGAAAAGTTGGCC
TCCCAGAGCCAGACGAGGGTTTGATAGGGGCGAAGATGAGAGACATCGCG
GACTTGGTGTCGCACACACAGCTGCAACAACGCCCGCGCCTGCACCACAG
CTCCACTCACCGTGGCCAGGACCATTTTGAACGTCTTACACGCAGCCTCG
CCCGCCATCCCTTCCTTCATCCCCCCTTCCTTCTCCATCACAAGCATCAA
GGCTTTTTCCAAGGCGTAAATGATCCTCATCTCCTGCTGAGCCGCCCAAG
GGAGAAGCAGGCGTCCGAGCTGCACCTGCGCCCACGTCACAATCCTATCA
TTCTCCACCAACAACACCATGTACCTTTTCTTCCGTCCTCCTTCTCCTCT
CTCCCTCCCTTCCTCATTATTCACTTCATCGCCTTCCTCATCGTCACTCT
CATTGTCATCCCCTGCAGCAAGAGAGACATCAATACTCTTCTCATCCACC
TCTTCCTTTGCTGCCGCACACAGCACCCGCACCCTCTCCTGAAACGACGC
CGGCAAGCCCAAAAGCATCACCTCTGATGCGGACGAAAAGGGTGAAGAGT
GGGAAGAAGCAAGGGAAGGACGGTATTCGTCCGTGAAGGCCCAATGCAAG
GTACAGAGGGCTTGGAGCACTTCCTGTCGGACTGACTCGGGCACGGCCAC
GATAGGGCTGCCCTCGCGGAGGACCAGGTCGAAAGAGGGGGCGGAGGCGG
AGGTGAGGGACTGGCCTAGAAGATGCAGAGCTCCCAGGGCTCTGGCTTGC
TCCCCTTGGAAGCAGACGGCTGGATGTCCGCCGCGTTTCCACAATCGATC
CTTCAGGCCAAGTACACTGCCGCCACCACACGCACGTTCAATATCGTTCC
TCACCCGCTCCAGAAGATGGAGGAGCTGTTGCTGTTGCTGTTGCTGTTGC
TGCGAAGAAGAAAAATGAGGAGGAGACACGGCCTCACGGACAGTCTTAGC
AAAGCGGGGCCAGGAGGCCAAGAAACGCGGCCAGGGAAAAGGAGCCAGTT
GCGGCAACGAGGAGGAGGAAGAGAAGGGAGGATTCGAAGGAGACAGTTTA
AGTGCCACCACCCGATCCAATGCACCCCACATATCGTCACGTCGGCGCCA
TAGCAACTTCATCTGCTTCTGCTGCTGCACCGTTTTGTCCTGTCTCTCGT
CCTCACTCGTTTCTACCCTTTCCTCTTCCGCCAATGACATTTCTACCATC
ACGCTGTCAAAAGCTTGGAAGAGGATGGGCAAGAGTGGCAACATCGGGTA
AGCTTCCAAACCTCCCGGCAAAAGCTCTTCAGCCGCTGCCACAGCTGCTC
CTCCTCCTGCTCTTCTCTCTTCCCCTTGCCCTGCAGCTGCAGTTGCTGCC
GCTCCCATCAAAATAGCCACCTCCATCCAGGTCAAATCCTGCCGGTGCTG
TAACTGGCCTCGCTGACCAGTGTAGAACCCAAACGCTTCCACTTCCCGTA
CGCGCTGGGGCAGGCGAGCCAGAGTCCCAACGCGCGCTGCTGCTGCTGTC
GCCTGGAATATACGCCATTCCCTCCTGTTTTCCTTTCCTCCCTCCCTTCT
TCCCCCCGTGACGATGAGATGGGCTTCCCACAGCTCCTCCATTTCTCGGT
GGTCCAATGGCCATTCCAATACAGAAAAAGGGCTGGAAGAAGACGATAAT
GATGAGGCAAGCGCCAGGCCGAGCTGTAGGGCCTTGGCCACCATGGGACA
AGATCGAAGAATATCCGTTGCATGACCGAGAGCAAGAGACACCTGATGGC
CGTGAGAGAGAGGAACAATCGCACCAGACCCCAGTCCAGAGGGAGGGAGA
GACGCGCTGTCGAAGGAGCGGAGGAGGGCTTGCAGTGCCTCCACTCGCGG
AGTTAGACGCGTGGCAACCGGACAGGCACGCCGAAGCACTCGCAGGCAAA
GTTCCAGCAATAAACAAATGCCATTGGGGATACTGGTAGCACAAGAGAGA
AAACACGGGACATTGCTGCCTTCCTTCCTTCCCTGCTTCTCCTGGCCCTC
TCGTAGCTTTCCAAGTTCCAAACTTAAGCAAATGCGGCGAGCTACGTCTG
TCCCGTCTTTATCATCATTACTGCTCTTCAATGGGAAGAGGAGGGGGAGT
AGCAGTTCCTTCAAAGCCACTAGTAGATGCAGATCACGCGTCATTGTCCC
TGCCTCGGCGTCTACAAAGGTTAAGCAAATGCTGTTACTACTGCCGCTGT
TGCCGCTGCTGCTACTACTAACGCTGTTGCTGATACCATGATTAGGTCTG
CTTATACAACAGTTCTCATCAAGCAAACGCATCCAAGCCGCGCTTGAGTC
GTAAAAGAGAGATAATGGGATGTGAGGAGGGAAAAGGCCACTATACGTCC
GGGTATGGGCCTCAGTCAGCGCCTCGCTCCGGACATGCCCCTGCTCTAGC
AGACAGCCCGTCACCTCCCCCCATCGCAACAGTGCACCTTGGTGTCGCCA
TAACGCGGTCGAATCTTCCACGCCGGCAAAATTATTAAAGGTGGCTGCTG
CTGCTGCTGCTGCTGATGCTGCCTCCTTTCCCCTAGTTTTCCCTTTCTTT
CCTTCCTTCCGCTGCACCAGCTCCATCAGCGCCGCATGCGCTTCCACCAT
CCCCGCCGCCAAAATCAAACCTCCCTCTTTCCCTTCTCCCCGTCCCAAAA
TCCGTGCTACCGCCAGAGTCAGTGGCCCAGCCAGCGCCATCCTTCTGTCC
CCTCCTCCCTCCTCCCCTCCCTCCTCATCTGCCTCCATCACTGCTACCCT
CCACGCATCGGTTCCTCATCGCCCTGGAG back to topprotein sequence of jgi.p|Nanoce1779_2|577966 >mRNA_1801-protein ID=mRNA_1801-protein|Name=jgi.p|Nanoce1779_2|577966|organism=Nannochloropsis oceanica|type=polypeptide|length=164bp
MRDIADLVSHTQLQQRPRLHHSSTHRGQDHFERLTRSLARHPFLHPPFLL
HHKHQGFFQGVNDPHLLLSRPREKQASELHLRPRHNPIILHQQHHVPFLP
SSFSSLPPFLIIHFIAFLIVTLIVIPCSKRDINTLLIHLFLCCRTQHPHP
LLKRRRQAQKHHL* back to topmRNA from alignment at scaffold_4:28949..32727- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1801 ID=mRNA_1801|Name=jgi.p|Nanoce1779_2|577966|organism=Nannochloropsis oceanica|type=mRNA|length=3779bp|location=Sequence derived from alignment at scaffold_4:28949..32727- (Nannochloropsis oceanica)
CCCCACAACTCCTCTCTCCAACCGTGCGCCCCATGAGCGAGCTGCAGTTT
CAGTCTCCAAGACAATCAAACGTTCTTTCACAAGGGATTGCTTGGCTAGC
GGTGCTTCTCCTGGATCCACTGGCCGAGAAGGGACGAGCAGATGGAAACG
AAGCAGGCCTAGACGTACCCACGCCAGACCCGCCAAGTGGAAAGAGAGAG
GGACTGAAGACGAGGAAGAGGGAGAGGAGGAAGAATAAGGTGAGATGATA
GCAGCCATGGCCCGAAGTGCGGGCTGCAGCAACGCGGTCGCGGCAGAGGC
GAAACGATGATCCTTTGAGCGAGAGGACAGCAGGGCTATCTGCTCTAACC
AAGCCTCGACGGAGGGTGAGTCCGAGGGAGGTCCTTGGAAGAGGAGACGA
TGGAGGGCTTGCCAATCATCTGAGGCAAATGTCCCCTCAAACGCACCAAT
CATGTACAGCAATGCATGCTGAATGTGCCTCCCTTCCTCGTCGTCTATGT
CGACCTTGCCTACTTCCCTCCCACCTCCCATCGCCACCGACTCTTCCTGC
TTCTGCTCCTGCTGCACCTGCTCCATTTGTTGCTGTCTCACCAACGATAG
CAACCTCACTGCCTCCTGAAGTTGCTGTTGGCGTTGTTTCCCTCCCTCCA
GGGTTGTCAGACCCACCGAACCTCGATCTCCACCTCCTACCCGCAGCAGT
GACCAAACAAGACGAGACACCGGCGCAGCCAGCACCCACGAGGGGTCAGA
TGGTCCCAAAGGAACGAGGGAGGGAGCGATAGGAAGGGGGAAGGAAGAGG
GATTCTCTTCTTCCCCTGCAACCAGGCCCCAGTGGCCGTCCCGTCCTAGT
CCCTGCCAGAGGGCGTGGTGGAGGTTGGTGCGGAGGGTGGGGAGGAGGGA
TGCAATCAAGTGCCCGAGTGGATGAAGCTCCAGAATAACGCCACCTGTTC
TTGTTTCTCCGTCTCCTGTAAGTTCTGCTCCTCTCGCTGAAAAGTTGGCC
TCCCAGAGCCAGACGAGGGTTTGATAGGGGCGAAGATGAGAGACATCGCG
GACTTGGTGTCGCACACACAGCTGCAACAACGCCCGCGCCTGCACCACAG
CTCCACTCACCGTGGCCAGGACCATTTTGAACGTCTTACACGCAGCCTCG
CCCGCCATCCCTTCCTTCATCCCCCCTTCCTTCTCCATCACAAGCATCAA
GGCTTTTTCCAAGGCGTAAATGATCCTCATCTCCTGCTGAGCCGCCCAAG
GGAGAAGCAGGCGTCCGAGCTGCACCTGCGCCCACGTCACAATCCTATCA
TTCTCCACCAACAACACCATGTACCTTTTCTTCCGTCCTCCTTCTCCTCT
CTCCCTCCCTTCCTCATTATTCACTTCATCGCCTTCCTCATCGTCACTCT
CATTGTCATCCCCTGCAGCAAGAGAGACATCAATACTCTTCTCATCCACC
TCTTCCTTTGCTGCCGCACACAGCACCCGCACCCTCTCCTGAAACGACGC
CGGCAAGCCCAAAAGCATCACCTCTGATGCGGACGAAAAGGGTGAAGAGT
GGGAAGAAGCAAGGGAAGGACGGTATTCGTCCGTGAAGGCCCAATGCAAG
GTACAGAGGGCTTGGAGCACTTCCTGTCGGACTGACTCGGGCACGGCCAC
GATAGGGCTGCCCTCGCGGAGGACCAGGTCGAAAGAGGGGGCGGAGGCGG
AGGTGAGGGACTGGCCTAGAAGATGCAGAGCTCCCAGGGCTCTGGCTTGC
TCCCCTTGGAAGCAGACGGCTGGATGTCCGCCGCGTTTCCACAATCGATC
CTTCAGGCCAAGTACACTGCCGCCACCACACGCACGTTCAATATCGTTCC
TCACCCGCTCCAGAAGATGGAGGAGCTGTTGCTGTTGCTGTTGCTGTTGC
TGCGAAGAAGAAAAATGAGGAGGAGACACGGCCTCACGGACAGTCTTAGC
AAAGCGGGGCCAGGAGGCCAAGAAACGCGGCCAGGGAAAAGGAGCCAGTT
GCGGCAACGAGGAGGAGGAAGAGAAGGGAGGATTCGAAGGAGACAGTTTA
AGTGCCACCACCCGATCCAATGCACCCCACATATCGTCACGTCGGCGCCA
TAGCAACTTCATCTGCTTCTGCTGCTGCACCGTTTTGTCCTGTCTCTCGT
CCTCACTCGTTTCTACCCTTTCCTCTTCCGCCAATGACATTTCTACCATC
ACGCTGTCAAAAGCTTGGAAGAGGATGGGCAAGAGTGGCAACATCGGGTA
AGCTTCCAAACCTCCCGGCAAAAGCTCTTCAGCCGCTGCCACAGCTGCTC
CTCCTCCTGCTCTTCTCTCTTCCCCTTGCCCTGCAGCTGCAGTTGCTGCC
GCTCCCATCAAAATAGCCACCTCCATCCAGGTCAAATCCTGCCGGTGCTG
TAACTGGCCTCGCTGACCAGTGTAGAACCCAAACGCTTCCACTTCCCGTA
CGCGCTGGGGCAGGCGAGCCAGAGTCCCAACGCGCGCTGCTGCTGCTGTC
GCCTGGAATATACGCCATTCCCTCCTGTTTTCCTTTCCTCCCTCCCTTCT
TCCCCCCGTGACGATGAGATGGGCTTCCCACAGCTCCTCCATTTCTCGGT
GGTCCAATGGCCATTCCAATACAGAAAAAGGGCTGGAAGAAGACGATAAT
GATGAGGCAAGCGCCAGGCCGAGCTGTAGGGCCTTGGCCACCATGGGACA
AGATCGAAGAATATCCGTTGCATGACCGAGAGCAAGAGACACCTGATGGC
CGTGAGAGAGAGGAACAATCGCACCAGACCCCAGTCCAGAGGGAGGGAGA
GACGCGCTGTCGAAGGAGCGGAGGAGGGCTTGCAGTGCCTCCACTCGCGG
AGTTAGACGCGTGGCAACCGGACAGGCACGCCGAAGCACTCGCAGGCAAA
GTTCCAGCAATAAACAAATGCCATTGGGGATACTGGTAGCACAAGAGAGA
AAACACGGGACATTGCTGCCTTCCTTCCTTCCCTGCTTCTCCTGGCCCTC
TCGTAGCTTTCCAAGTTCCAAACTTAAGCAAATGCGGCGAGCTACGTCTG
TCCCGTCTTTATCATCATTACTGCTCTTCAATGGGAAGAGGAGGGGGAGT
AGCAGTTCCTTCAAAGCCACTAGTAGATGCAGATCACGCGTCATTGTCCC
TGCCTCGGCGTCTACAAAGGTTAAGCAAATGCTGTTACTACTGCCGCTGT
TGCCGCTGCTGCTACTACTAACGCTGTTGCTGATACCATGATTAGGTCTG
CTTATACAACAGTTCTCATCAAGCAAACGCATCCAAGCCGCGCTTGAGTC
GTAAAAGAGAGATAATGGGATGTGAGGAGGGAAAAGGCCACTATACGTCC
GGGTATGGGCCTCAGTCAGCGCCTCGCTCCGGACATGCCCCTGCTCTAGC
AGACAGCCCGTCACCTCCCCCCATCGCAACAGTGCACCTTGGTGTCGCCA
TAACGCGGTCGAATCTTCCACGCCGGCAAAATTATTAAAGGTGGCTGCTG
CTGCTGCTGCTGCTGATGCTGCCTCCTTTCCCCTAGTTTTCCCTTTCTTT
CCTTCCTTCCGCTGCACCAGCTCCATCAGCGCCGCATGCGCTTCCACCAT
CCCCGCCGCCAAAATCAAACCTCCCTCTTTCCCTTCTCCCCGTCCCAAAA
TCCGTGCTACCGCCAGAGTCAGTGGCCCAGCCAGCGCCATCCTTCTGTCC
CCTCCTCCCTCCTCCCCTCCCTCCTCATCTGCCTCCATCACTGCTACCCT
CCACGCATCGGTTCCTCATCGCCCTGGAG back to topCoding sequence (CDS) from alignment at scaffold_4:28949..32727- >mRNA_1801 ID=mRNA_1801|Name=jgi.p|Nanoce1779_2|577966|organism=Nannochloropsis oceanica|type=CDS|length=492bp|location=Sequence derived from alignment at scaffold_4:28949..32727- (Nannochloropsis oceanica)
ATGAGAGACATCGCGGACTTGGTGTCGCACACACAGCTGCAACAACGCCC
GCGCCTGCACCACAGCTCCACTCACCGTGGCCAGGACCATTTTGAACGTC
TTACACGCAGCCTCGCCCGCCATCCCTTCCTTCATCCCCCCTTCCTTCTC
CATCACAAGCATCAAGGCTTTTTCCAAGGCGTAAATGATCCTCATCTCCT
GCTGAGCCGCCCAAGGGAGAAGCAGGCGTCCGAGCTGCACCTGCGCCCAC
GTCACAATCCTATCATTCTCCACCAACAACACCATGTACCTTTTCTTCCG
TCCTCCTTCTCCTCTCTCCCTCCCTTCCTCATTATTCACTTCATCGCCTT
CCTCATCGTCACTCTCATTGTCATCCCCTGCAGCAAGAGAGACATCAATA
CTCTTCTCATCCACCTCTTCCTTTGCTGCCGCACACAGCACCCGCACCCT
CTCCTGAAACGACGCCGGCAAGCCCAAAAGCATCACCTCTGA back to top
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