jgi.p|Nanoce1779_2|563491, mRNA_1799 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|563491
Unique NamemRNA_1799
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length405
Alignment locationscaffold_4:18665..19644 -

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Properties
Property NameValue
TranscriptId563577
TrackFilteredModels2
ProteinId563491
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:18665..19644 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|563491gene_1799Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|563491mRNA_1799-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1799CDS_1799Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1799 ID=mRNA_1799|Name=jgi.p|Nanoce1779_2|563491|organism=Nannochloropsis oceanica|type=mRNA|length=405bp
ATGATTTGTGCGCCGTCCTTTTCCTTGTTCGAGTCGATGAGCGCCTTGGA
ACTGATGGACCCAAGATGGACGAATCCTTGCTCGAGGTGGCATGGTACGA
GGGCGCGAGTCTCCTCGACTCCCTTTTCCTCTGCCTCTATCCGCACGGGG
CCGCTATTCACGCCTTATGCTCGATGGTGGGGGAAGCGAGGGGAGCAGAA
GGAGGAGGATGGGGAGGAGGAAGGAAAGAAGGGCAGTGGAGGGAACGGAG
GAAACGGGGCAGGAGGGGGGCCGATCATGCGCGACGCCATCAGTGAGGAT
CCTGCCTGCATGCCAGCCTTGGTTCTCCTGGCCCTCGTCTTTGGCACCCT
CAAATCAGTAGGGGCTTTCCGGGAGGTACGGAGGGAGGGAGGGAGCGAGG
GGTAG
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protein sequence of jgi.p|Nanoce1779_2|563491

>mRNA_1799-protein ID=mRNA_1799-protein|Name=jgi.p|Nanoce1779_2|563491|organism=Nannochloropsis oceanica|type=polypeptide|length=135bp
MICAPSFSLFESMSALELMDPRWTNPCSRWHGTRARVSSTPFSSASIRTG
PLFTPYARWWGKRGEQKEEDGEEEGKKGSGGNGGNGAGGGPIMRDAISED
PACMPALVLLALVFGTLKSVGAFREVRREGGSEG*
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mRNA from alignment at scaffold_4:18665..19644-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1799 ID=mRNA_1799|Name=jgi.p|Nanoce1779_2|563491|organism=Nannochloropsis oceanica|type=mRNA|length=980bp|location=Sequence derived from alignment at scaffold_4:18665..19644- (Nannochloropsis oceanica)
ATGATTTGTGCGCCGTCCTTTTCCTTGTTCGAGTCGATGAGCGCCTTGGA
ACTGATGGACCCAAGATGGACGAATCCTTGCTCGAGGTAGGGTGGAAGTA
TAGGGAGAAAGAGAGCGAATCCTTAGCAGTAATGAGTGACCGCTGTAAAG
ACCCAGTGATTTCATTCATCCTACCTTTGAGCTAATTTGCCCACTTTGTA
CACTTGAACCAACACAGCCTGTGGAAGGCGTCTCCTCCCGCCTGGCCCGT
GGGGAGCTGCCCATCCAAGTGTCTCTGACGCAGGCTGCCAGGATTGTTGG
GGGCATGCTAGCGTACGAGGTAAGGGAGAGAAGGGGGAAGGAGGAAGAGA
GGGAGGAGGGAGGGAGTGTGGCAAAAATTGTCTTGAGGTGCATGAGAAGC
TATCAACAGCAGGAAGAAATCCCTGTGTAGGCTTGTTTGATGCTTATGTT
CTTCATCTCCCTTCTCCACCACAGGTGGCATGGTACGAGGGCGCGAGTCT
CCTCGACTCCCTTTTCCTCTGCCTCTATCCGCACGGGGCCGCTATTCACG
CCTTATGCTCGATGGTGGGGGAAGCGAGGGGAGCAGAAGGAGGAGGATGG
GGAGGAGGAAGGAAAGAAGGGCAGTGGAGGGAACGGAGGAAACGGGGCAG
GAGGGGGGCCGATCATGCGCGGTAAGATAGGAAAGGAAGAGAGAAGGAGG
GAGGGAAGGAGCGAAGGAAGGAGCGAAGGAAGGAGGGGAGAATGGAGTAT
TGGGGGCGATGCCAATGAAGCATTTCGAGGCAGCAAGCTAGGTTGTTCAT
AATACGTGGGCTGAGAAAGCCACGCCTCCCTTCGTCCCTCCCTCCCTCCC
TTCCCCAGACGCCATCAGTGAGGATCCTGCCTGCATGCCAGCCTTGGTTC
TCCTGGCCCTCGTCTTTGGCACCCTCAAATCAGTAGGGGCTTTCCGGGAG
GTACGGAGGGAGGGAGGGAGCGAGGGGTAG
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Coding sequence (CDS) from alignment at scaffold_4:18665..19644-

>mRNA_1799 ID=mRNA_1799|Name=jgi.p|Nanoce1779_2|563491|organism=Nannochloropsis oceanica|type=CDS|length=1215bp|location=Sequence derived from alignment at scaffold_4:18665..19644- (Nannochloropsis oceanica)
ACGCCATCAGTGAGGATCCTGCCTGCATGCCAGCCTTGGTTCTCCTGGCC
CTCGTCTTTGGCACCCTCAAATCAGTAGGGGCTTTCCGGGAGGTACGGAG
GGAGGGAGGGAGCGAGGGGTAGGTGGCATGGTACGAGGGCGCGAGTCTCC
TCGACTCCCTTTTCCTCTGCCTCTATCCGCACGGGGCCGCTATTCACGCC
TTATGCTCGATGGTGGGGGAAGCGAGGGGAGCAGAAGGAGGAGGATGGGG
AGGAGGAAGGAAAGAAGGGCAGTGGAGGGAACGGAGGAAACGGGGCAGGA
GGGGGGCCGATCATGCGCGATGATTTGTGCGCCGTCCTTTTCCTTGTTCG
AGTCGATGAGCGCCTTGGAACTGATGGACCCAAGATGGACGAATCCTTGC
TCGAGACGCCATCAGTGAGGATCCTGCCTGCATGCCAGCCTTGGTTCTCC
TGGCCCTCGTCTTTGGCACCCTCAAATCAGTAGGGGCTTTCCGGGAGGTA
CGGAGGGAGGGAGGGAGCGAGGGGTAGGTGGCATGGTACGAGGGCGCGAG
TCTCCTCGACTCCCTTTTCCTCTGCCTCTATCCGCACGGGGCCGCTATTC
ACGCCTTATGCTCGATGGTGGGGGAAGCGAGGGGAGCAGAAGGAGGAGGA
TGGGGAGGAGGAAGGAAAGAAGGGCAGTGGAGGGAACGGAGGAAACGGGG
CAGGAGGGGGGCCGATCATGCGCGATGATTTGTGCGCCGTCCTTTTCCTT
GTTCGAGTCGATGAGCGCCTTGGAACTGATGGACCCAAGATGGACGAATC
CTTGCTCGAGACGCCATCAGTGAGGATCCTGCCTGCATGCCAGCCTTGGT
TCTCCTGGCCCTCGTCTTTGGCACCCTCAAATCAGTAGGGGCTTTCCGGG
AGGTACGGAGGGAGGGAGGGAGCGAGGGGTAGGTGGCATGGTACGAGGGC
GCGAGTCTCCTCGACTCCCTTTTCCTCTGCCTCTATCCGCACGGGGCCGC
TATTCACGCCTTATGCTCGATGGTGGGGGAAGCGAGGGGAGCAGAAGGAG
GAGGATGGGGAGGAGGAAGGAAAGAAGGGCAGTGGAGGGAACGGAGGAAA
CGGGGCAGGAGGGGGGCCGATCATGCGCGATGATTTGTGCGCCGTCCTTT
TCCTTGTTCGAGTCGATGAGCGCCTTGGAACTGATGGACCCAAGATGGAC
GAATCCTTGCTCGAG
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Synonyms
Publications