jgi.p|Nanoce1779_2|577946, mRNA_1798 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|577946
Unique Name	mRNA_1798
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	997
Alignment location	scaffold_4:11432..13102 +

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Properties


Property Name	Value
TranscriptId	578032
Track	FilteredModels2
ProteinId	577946

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:11432..13102 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577946	gene_1798	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577946	mRNA_1798-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1798	CDS_1798	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:11432..13102+
coding sequence from alignment at scaffold_4:11432..13102+

mRNA sequence

>mRNA_1798 ID=mRNA_1798|Name=jgi.p|Nanoce1779_2|577946|organism=Nannochloropsis oceanica|type=mRNA|length=997bp
CAGGCCGGCTCGAGCCCATGGCGGCACCGCCAAGGAATCGGTGGCATGGA
CCGAGAGTAGACAAAATACGGGGCGCACGGCATATTACTTTCCCGGTAGC
ATTCGCCATGATTATTCTTGTGGCGCTGCATACCTTTCCTAAATTTTATT
CTGAAATATCGAACGCACCAAGTCAGGAGCTAGTCCGAGATTTAAACGAG
GCTCCCCTCCCGGCCGAGACTTTTACAGAAGCACAACTACAAAAAGAGAT
ATCCAAAGCGTACGAGTTAGGGCGACAAGCTGGTGTACAGGCTGCCACAG
AAGCAGTTGAGAAAGAAGAGCAAAGAATGGCCGGAAACAACGAAAAAAAA
AAAGAAAGAGCTATCGTCGCTGCCACTACTACAATAAGAGAAACAGCAGC
ATCTGAGGCAAAAAATACGATCATTATCACTTCTCCTGTGGCTGCATCTT
CCTCCACAAATGCTCCTCCCTCCGAAGCCTGCCCTTCCTACCATGCCACC
GCTCTGCAACCCCCGCACCAGGGCCGTCGCAAGCCGGGGGAATGCGTTGG
ACCGCGTGGAAGTGTATGGTCGGAGCGAGGTTTCAATTACTACGTGTTTC
GCGACATGTTTTATCCGTACGAGAAGGGTCAGTCTGAATTCAAGAGCTTG
GTGTTGTTCACGGCGGGCAGGAGTGCGATGGCGAATATAGATGGGCTGGT
CCGGTTGTGGGGATTGGATAATTTTGACTATGTGCTGATGCATTTTGACG
ACTCGGCGACAGAGTGGAATCAGTTCGACTGGTACAAGCACACTGTTGGT
ATCACAGCCCAGAACCAGGCCAAATTCTGGTTCTACAAGCGCTTCGCCTC
GCCCTGGCTCGTCTCCGGCTACAGGTAGAGAAGTGTAGGAGGAAAGGAGG
AAAAGGCATGAGAATGATATAAAGATGCATTTTATTATCCACATTCTCAC
GAGATGGAGAAATGAATCCATTTCGTTTTGTGGATTCCGAAACCGGC

protein sequence of jgi.p|Nanoce1779_2|577946

>mRNA_1798-protein ID=mRNA_1798-protein|Name=jgi.p|Nanoce1779_2|577946|organism=Nannochloropsis oceanica|type=polypeptide|length=287bp
MAAPPRNRWHGPRVDKIRGARHITFPVAFAMIILVALHTFPKFYSEISNA
PSQELVRDLNEAPLPAETFTEAQLQKEISKAYELGRQAGVQAATEAVEKE
EQRMAGNNEKKKERAIVAATTTIRETAASEAKNTIIITSPVAASSSTNAP
PSEACPSYHATALQPPHQGRRKPGECVGPRGSVWSERGFNYYVFRDMFYP
YEKGQSEFKSLVLFTAGRSAMANIDGLVRLWGLDNFDYVLMHFDDSATEW
NQFDWYKHTVGITAQNQAKFWFYKRFASPWLVSGYR*

mRNA from alignment at scaffold_4:11432..13102+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1798 ID=mRNA_1798|Name=jgi.p|Nanoce1779_2|577946|organism=Nannochloropsis oceanica|type=mRNA|length=1671bp|location=Sequence derived from alignment at scaffold_4:11432..13102+ (Nannochloropsis oceanica)
CAGGCCGGCTCGAGCCCATGGCGGCACCGCCAAGGAATCGGTGGCATGGA
CCGAGAGTAGACAAAATACGGGGCGCACGGCATGTAAGTGGGCTCTTGGA
CAAGTAGAAAAGTAAACCCTCCCATAAATCAAGAAAAGCTAATGTAGTTG
TAGAATTGGATAAAGCTTCCATCCACATATCCCTTCTCCATCCTTTTCCT
GTCTCCAACCCCTCTTCCCGTCTCTCCCCTCCTCCCCAATACATTCTCTC
TCTAGATTACTTTCCCGGTAGCATTCGCCATGATTATTCTTGTGGCGCTG
CATACCTTTCCTAAATTTTATTCTGAAATATCGAACGCACCAAGTCAGGA
GCTAGTCCGAGATTTAAACGAGGTATGCAGGAAGGGATGGACGGAAAAGT
ACGAGTCAAGAACAGTGGAAGTTGAGGAAGTAAGGGGAGGAAGGATTAGG
AATGAGAACATACTCAAGCTATAGCTTAGGTGATATAAAAATGGTAGAAC
TCTTATTTACTCGCAAGTTTGTTGCCATCACACACCATGTCGCAACACTC
ACCCATCCCGATGTCCTCTTTCTCCCTACCCTCACCCAACACCGACAGGC
TCCCCTCCCGGCCGAGACTTTTACAGAAGCACAACTACAAAAAGAGATAT
CCAAAGCGTACGAGTTAGGGCGACAAGCTGGTGTACAGGCTGCCACAGAA
GCAGTTGAGAAAGAAGAGCAAAGAATGGCCGGAAACAACGAAAAAAAAAA
AGAAAGAGCTATCGTCGCTGCCACTACTACAATAAGAGAAACAGCAGCAT
CTGAGGCAAAAAATACGATCATTATCACTTCTCCTGTGGCTGCATCTTCC
TCCACAAATGCTCCTCCCTCCGAAGCCTGCCCTTCCTACCATGCCACCGC
TCTGCAACCCCCGCACCAGGGCCGTCGCAAGCCGGGGGAATGCGTTGGAC
CGCGTGGAAGTGTATGGTCGGAGCGAGGTTTCAATTACTACGTGTTTCGC
GACATGTTTTATCCGTACGAGAAGGGTCAGTCTGAATTCAAGAGCTTGGT
GTTGTTCACGGCGGGCAGGAGTGCGATGGCGAATATAGATGGGCTGGTCC
GGTTGTGGGGATTGGATAATTTTGACTATGTGCTGATGCATTTTGACGAC
TCGGCGACAGAGTGGAATCAGTAAGTGCGACATTCTCTTCTCCTCTTCTC
CCTTGTGAACTGTCGTCGGGTTGTTGCCCTTGTTCTTGCTGTGAGGAATC
TTGATGGGCTGATCAGGCTGTAGGGGTTGCTCACAGAATTGAAAGGAAGC
TTCGATGACCGGGTGACAGATGGGAATAAGTTCTGTTTCTTCCTCGACGT
CATTTCATGTGTGTAGGAGGAGTGTTTATGATTCGAGTGCTGGAAATGGA
AAAAAAACATTCTAACATTGCTCCCCCTCCCTGCCTTGCCCGCAAGGTTC
GACTGGTACAAGCACACTGTTGGTATCACAGCCCAGAACCAGGCCAAATT
CTGGTTCTACAAGCGCTTCGCCTCGCCCTGGCTCGTCTCCGGCTACAGGT
AGAGAAGTGTAGGAGGAAAGGAGGAAAAGGCATGAGAATGATATAAAGAT
GCATTTTATTATCCACATTCTCACGAGATGGAGAAATGAATCCATTTCGT
TTTGTGGATTCCGAAACCGGC

Coding sequence (CDS) from alignment at scaffold_4:11432..13102+

>mRNA_1798 ID=mRNA_1798|Name=jgi.p|Nanoce1779_2|577946|organism=Nannochloropsis oceanica|type=CDS|length=3444bp|location=Sequence derived from alignment at scaffold_4:11432..13102+ (Nannochloropsis oceanica)
ATGGCGGCACCGCCAAGGAATCGGTGGCATGGACCGAGAGTAGACAAAAT
ACGGGGCGCACGGCATATTACTTTCCCGGTAGCATTCGCCATGATTATTC
TTGTGGCGCTGCATACCTTTCCTAAATTTTATTCTGAAATATCGAACGCA
CCAAGTCAGGAGCTAGTCCGAGATTTAAACGAGGCTCCCCTCCCGGCCGA
GACTTTTACAGAAGCACAACTACAAAAAGAGATATCCAAAGCGTACGAGT
TAGGGCGACAAGCTGGTGTACAGGCTGCCACAGAAGCAGTTGAGAAAGAA
GAGCAAAGAATGGCCGGAAACAACGAAAAAAAAAAAGAAAGAGCTATCGT
CGCTGCCACTACTACAATAAGAGAAACAGCAGCATCTGAGGCAAAAAATA
CGATCATTATCACTTCTCCTGTGGCTGCATCTTCCTCCACAAATGCTCCT
CCCTCCGAAGCCTGCCCTTCCTACCATGCCACCGCTCTGCAACCCCCGCA
CCAGGGCCGTCGCAAGCCGGGGGAATGCGTTGGACCGCGTGGAAGTGTAT
GGTCGGAGCGAGGTTTCAATTACTACGTGTTTCGCGACATGTTTTATCCG
TACGAGAAGGGTCAGTCTGAATTCAAGAGCTTGGTGTTGTTCACGGCGGG
CAGGAGTGCGATGGCGAATATAGATGGGCTGGTCCGGTTGTGGGGATTGG
ATAATTTTGACTATGTGCTGATGCATTTTGACGACTCGGCGACAGAGTGG
AATCAGTTCGACTGGTACAAGCACACTGTTGGTATCACAGCCCAGAACCA
GGCCAAATTCTGGTTCTACAAGCGCTTCGCCTCGCCCTGGCTCGTCTCCG
GCTACAGGTAGATGGCGGCACCGCCAAGGAATCGGTGGCATGGACCGAGA
GTAGACAAAATACGGGGCGCACGGCATATTACTTTCCCGGTAGCATTCGC
CATGATTATTCTTGTGGCGCTGCATACCTTTCCTAAATTTTATTCTGAAA
TATCGAACGCACCAAGTCAGGAGCTAGTCCGAGATTTAAACGAGGCTCCC
CTCCCGGCCGAGACTTTTACAGAAGCACAACTACAAAAAGAGATATCCAA
AGCGTACGAGTTAGGGCGACAAGCTGGTGTACAGGCTGCCACAGAAGCAG
TTGAGAAAGAAGAGCAAAGAATGGCCGGAAACAACGAAAAAAAAAAAGAA
AGAGCTATCGTCGCTGCCACTACTACAATAAGAGAAACAGCAGCATCTGA
GGCAAAAAATACGATCATTATCACTTCTCCTGTGGCTGCATCTTCCTCCA
CAAATGCTCCTCCCTCCGAAGCCTGCCCTTCCTACCATGCCACCGCTCTG
CAACCCCCGCACCAGGGCCGTCGCAAGCCGGGGGAATGCGTTGGACCGCG
TGGAAGTGTATGGTCGGAGCGAGGTTTCAATTACTACGTGTTTCGCGACA
TGTTTTATCCGTACGAGAAGGGTCAGTCTGAATTCAAGAGCTTGGTGTTG
TTCACGGCGGGCAGGAGTGCGATGGCGAATATAGATGGGCTGGTCCGGTT
GTGGGGATTGGATAATTTTGACTATGTGCTGATGCATTTTGACGACTCGG
CGACAGAGTGGAATCAGTTCGACTGGTACAAGCACACTGTTGGTATCACA
GCCCAGAACCAGGCCAAATTCTGGTTCTACAAGCGCTTCGCCTCGCCCTG
GCTCGTCTCCGGCTACAGGTAGATGGCGGCACCGCCAAGGAATCGGTGGC
ATGGACCGAGAGTAGACAAAATACGGGGCGCACGGCATATTACTTTCCCG
GTAGCATTCGCCATGATTATTCTTGTGGCGCTGCATACCTTTCCTAAATT
TTATTCTGAAATATCGAACGCACCAAGTCAGGAGCTAGTCCGAGATTTAA
ACGAGGCTCCCCTCCCGGCCGAGACTTTTACAGAAGCACAACTACAAAAA
GAGATATCCAAAGCGTACGAGTTAGGGCGACAAGCTGGTGTACAGGCTGC
CACAGAAGCAGTTGAGAAAGAAGAGCAAAGAATGGCCGGAAACAACGAAA
AAAAAAAAGAAAGAGCTATCGTCGCTGCCACTACTACAATAAGAGAAACA
GCAGCATCTGAGGCAAAAAATACGATCATTATCACTTCTCCTGTGGCTGC
ATCTTCCTCCACAAATGCTCCTCCCTCCGAAGCCTGCCCTTCCTACCATG
CCACCGCTCTGCAACCCCCGCACCAGGGCCGTCGCAAGCCGGGGGAATGC
GTTGGACCGCGTGGAAGTGTATGGTCGGAGCGAGGTTTCAATTACTACGT
GTTTCGCGACATGTTTTATCCGTACGAGAAGGGTCAGTCTGAATTCAAGA
GCTTGGTGTTGTTCACGGCGGGCAGGAGTGCGATGGCGAATATAGATGGG
CTGGTCCGGTTGTGGGGATTGGATAATTTTGACTATGTGCTGATGCATTT
TGACGACTCGGCGACAGAGTGGAATCAGTTCGACTGGTACAAGCACACTG
TTGGTATCACAGCCCAGAACCAGGCCAAATTCTGGTTCTACAAGCGCTTC
GCCTCGCCCTGGCTCGTCTCCGGCTACAGGTAGATGGCGGCACCGCCAAG
GAATCGGTGGCATGGACCGAGAGTAGACAAAATACGGGGCGCACGGCATA
TTACTTTCCCGGTAGCATTCGCCATGATTATTCTTGTGGCGCTGCATACC
TTTCCTAAATTTTATTCTGAAATATCGAACGCACCAAGTCAGGAGCTAGT
CCGAGATTTAAACGAGGCTCCCCTCCCGGCCGAGACTTTTACAGAAGCAC
AACTACAAAAAGAGATATCCAAAGCGTACGAGTTAGGGCGACAAGCTGGT
GTACAGGCTGCCACAGAAGCAGTTGAGAAAGAAGAGCAAAGAATGGCCGG
AAACAACGAAAAAAAAAAAGAAAGAGCTATCGTCGCTGCCACTACTACAA
TAAGAGAAACAGCAGCATCTGAGGCAAAAAATACGATCATTATCACTTCT
CCTGTGGCTGCATCTTCCTCCACAAATGCTCCTCCCTCCGAAGCCTGCCC
TTCCTACCATGCCACCGCTCTGCAACCCCCGCACCAGGGCCGTCGCAAGC
CGGGGGAATGCGTTGGACCGCGTGGAAGTGTATGGTCGGAGCGAGGTTTC
AATTACTACGTGTTTCGCGACATGTTTTATCCGTACGAGAAGGGTCAGTC
TGAATTCAAGAGCTTGGTGTTGTTCACGGCGGGCAGGAGTGCGATGGCGA
ATATAGATGGGCTGGTCCGGTTGTGGGGATTGGATAATTTTGACTATGTG
CTGATGCATTTTGACGACTCGGCGACAGAGTGGAATCAGTTCGACTGGTA
CAAGCACACTGTTGGTATCACAGCCCAGAACCAGGCCAAATTCTGGTTCT
ACAAGCGCTTCGCCTCGCCCTGGCTCGTCTCCGGCTACAGGTAG

Synonyms

Publications