jgi.p|Nanoce1779_2|628013, mRNA_1795 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|628013
Unique Name	mRNA_1795
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	979
Alignment location	scaffold_4:1648..4146 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	628099
Track	FilteredModels2
ProteinId	628013

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:1648..4146 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|628013	gene_1795	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|628013	mRNA_1795-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1795	CDS_1795	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:1648..4146+
coding sequence from alignment at scaffold_4:1648..4146+

mRNA sequence

>mRNA_1795 ID=mRNA_1795|Name=jgi.p|Nanoce1779_2|628013|organism=Nannochloropsis oceanica|type=mRNA|length=979bp
ATGGGGAGGGTCCTGGAGGAGGGGGAGGGTGGGAAGAAGGGAGGGCGGGC
GGGAAAGCGAGATGAAGGCCGGAGGAGGGGCAACGCATTCAAGGGCCGGC
GTCTCATTCCTCTTGATGAGGAGGGGGGGGAGGAGGTGATGAAGGAGAGG
ACAGAGGAGGGAAAGGAGCAGGAGGAGAAGGGAGGGAGGAAGTGGAGGGG
GTTGGGGTTGGAGACACGCATCCCCTTGCGGGGTCCACCGGGAATTGTAC
AGTCCACAGACTGGGCACTTCGGCTGGGGGCGACATTACGCCGGGTGGTG
CGAGCCCGACTGCTCACTGCGCTGAAAGACCGGCTGTACCGAGAGCATGG
AAGGGAAATTGAGGAGCGGGGGCTACCGTTGCCCTACCTTATCTTCCGCA
TCTCCCAAGCCTGTCTAAGGCAGGAAGGGAAGGAGGGAGGGTTGGAGGGA
GGGGAAGCGTTTTCAGTGTTGGAGACGCCGTGGTTGCTGAGCGACGACAC
GGACGACCCCAGCCTCCTTGCCCGCTTCCCCACTTGGAGGCCTCCTTTAA
AAACCTCACACATTCCCTCTTCTCCTCGCCTCCGTCATCGTCTCCACCCT
CGCTCCCACCCTCCCTGGCCTTTTTCTCCATAAACTCCACCCTTCCTTCC
TCCACCTCCTCCTCCTCTTCCTCTTTTTCTCGCACTTCCCTCCTCTTGCG
CCGCTTCTTGCACGCTGAGGATCGTCTCGCCTACCGCAGGCTCAATGATG
CCCAAGGGGGGGTAGAGCGGCGGCTGTTTCAGTTGCACACACAAGGAGAT
GCGGGGGTGGAGAGAGGGTGGGGGGCGCTGGGCGGAGTGGATGGAGAGGG
GGAGGGGGAAGGACGACGGGAGTATGCATCCAAGTTGTCGCTTGGGCCGG
AAGCGTGGCGGAAGGGGAGGAGGGAGGAGGGAGGGGAGGAGGAGGAAGGA
GAAGGGGAGGAAGAGGAGGAGGAGGGGGA

protein sequence of jgi.p|Nanoce1779_2|628013

>mRNA_1795-protein ID=mRNA_1795-protein|Name=jgi.p|Nanoce1779_2|628013|organism=Nannochloropsis oceanica|type=polypeptide|length=211bp
MGRVLEEGEGGKKGGRAGKRDEGRRRGNAFKGRRLIPLDEEGGEEVMKER
TEEGKEQEEKGGRKWRGLGLETRIPLRGPPGIVQSTDWALRLGATLRRVV
RARLLTALKDRLYREHGREIEERGLPLPYLIFRISQACLRQEGKEGGLEG
GEAFSVLETPWLLSDDTDDPSLLARFPTWRPPLKTSHIPSSPRLRHRLHP
RSHPPWPFSP*

mRNA from alignment at scaffold_4:1648..4146+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1795 ID=mRNA_1795|Name=jgi.p|Nanoce1779_2|628013|organism=Nannochloropsis oceanica|type=mRNA|length=2499bp|location=Sequence derived from alignment at scaffold_4:1648..4146+ (Nannochloropsis oceanica)
ATGGGGAGGGTCCTGGAGGAGGGGGAGGGTGGGAAGAAGGGAGGGCGGGC
GGGAAAGCGAGATGAAGGCCGGAGGAGGGGCAACGCATTCAAGGGTACAG
AGGAATGAAGATTCGGTAAGTGAGAAGAAGGAGGAAGAGGGGGAAGGGGG
GGAAATGGGGGGGGGAAAGGGAAAGGAGGGCGGGAGGGCGATATCCTCTT
CAAAAGCAGGCAGAAAATTTGACCATTAATTTTCCCTTCTTCTCATACGG
ACGACAGCCTCTGCAGGACCCAGGTATTAAGGAGGAGGAGGAGGAGGAGG
AGGAGGATGATGATGACGAGGAAGACCCCTACCTCGACGACGCCTACCCT
CCCTCCCCTACTTCTTCCTTCCCTCCCTCTTCCTCCTCCCCTTCCATGGG
CGGATTGGAAGACCCGGCCCGGCTGGAGGCTCTCGCGTACCGAGAGGAGG
AGGAGGAAGAGGGGGAGGAGGAGCTGGAGGGTGGGAGAGAGGAAGGGGAG
GAAGAAGAGGACGCGGAAGGGAAGATGCTCATGTGGAGGGCAGGAGAGGA
GGGGAACGCGATGCTGCCCACCTTTGACTTGACTGGGAGGGGGGAAAGCA
GTGAAGAAGGAGGAGAGGGAAAAAGGGAGGGAGGGAGGGAAGGGGAAGAC
GTGCCGCGCCGGCTTGTGAGGGAAGATTTGATTCTGTTGAAAAATCTGTT
GGAGGGAGGGAAGGAGGTAGGGCTGGAGGGAGGGAGGGAAGAAGGGCAGT
TCATGTCGTCGCCTCGTAGTGCCTCCTCTCTATTTGGGCCGGGGGAGGAG
AGAGGGAGGGACAAAAGCGAGGAGGAGGGAGAGGAGGTGGCGAAGGAGGA
GGAGGAGGAGGAAGAGGTGAAGGAGGAGGAGGAGGAGGAGGGAGGAGGGG
AGGGGAGGTATGTTTACGAGGACGAGTTGGAGGAAGGGGACGAATTCCAG
TACCTCGCTGAAGAGGAATCCCTCTTTGCCATGAGAGAAAGAGACAACTC
CCCTTCCCCCTCCTCCTCCTCCTCCCCTTCCTCCTCCCCGATCTCTTCTC
GTCTATCCCCAGAGGAAACGAAGGAGGGATTGGCCACGAAGGAGGACAAG
AACACCCGCTTCCTTGTGCGAGGGCCTGATGGTCGATTTTTCGCTCCTTC
CTCAGGCCGGCGTCTCATTCCTCTTGATGAGGAGGGGGGGGAGGAGGTGA
TGAAGGAGAGGACAGAGGAGGGAAAGGAGCAGGAGGAGAAGGGAGGGAGG
AAGTGGAGGGGGTTGGGGTTGGAGACACGCATCCCCTTGCGGGGTCCACC
GGGAATTGTACAGTAAGTGGTTTTGAGGGAGGGAAGGAGGGATGAAGGGA
GAGAGGGGAGACGGGAGCTTTCTGTCAAATATACCCACACACCCTATCGC
TCGTGTGACCCCCATCCTTTCCCTCCCTCCCTCCCTCCAGGTCCACAGAC
TGGGCACTTCGGCTGGGGGCGACATTACGCCGGGTGGTGCGAGCCCGACT
GCTCACTGCGCTGAAAGACCGGCTGTACCGAGAGCATGGAAGGGAAATTG
AGGAGGTAGGTAGGGAGGTAGGGAGGGAGGGAGGGGAGGAGGGAAGGAGG
GAAGCTGACGAGGTGTGCCGATGCAGAATCGAAATTTCCACCCGCCCATT
CTCATTCCAATTACCAGCGGGGGCTACCGTTGCCCTACCTTATCTTCCGC
ATCTCCCAAGCCTGTCTAAGGCAGGAAGGGAAGGAGGGAGGGTTGGAGGG
AGGGGAAGCGTTTTCAGTGTTGGAGACGCCGTGGTTGCTGAGGTGAGGAA
GCAGGGGGGGGAGAGGGGATGGAGGGAGAGGAGTATGGAGGGGTAATACA
GAGCACACGTGTTCACTCAAGAGGCTGCAGCATTTTTTGGCAATGTCTCT
GTCTCTCTCCTTCCCTTCCTTTTCCCTCTTGGACCACCCACTCACTCACT
TGTTGGCCGAGTTGTTTTTCGCCCGTCATCTGATGCTCACCACATCTCTT
ATCAACAACAGCGACGACACGGACGACCCCAGCCTCCTTGCCCGCTTCCC
CACTTGGAGGCCTCCTTTAAAAACCTCACACATTCCCTCTTCTCCTCGCC
TCCGTCATCGTCTCCACCCTCGCTCCCACCCTCCCTGGCCTTTTTCTCCA
TAAACTCCACCCTTCCTTCCTCCACCTCCTCCTCCTCTTCCTCTTTTTCT
CGCACTTCCCTCCTCTTGCGCCGCTTCTTGCACGCTGAGGATCGTCTCGC
CTACCGCAGGCTCAATGATGCCCAAGGGGGGGTAGAGCGGCGGCTGTTTC
AGTTGCACACACAAGGAGATGCGGGGGTGGAGAGAGGGTGGGGGGCGCTG
GGCGGAGTGGATGGAGAGGGGGAGGGGGAAGGACGACGGGAGTATGCATC
CAAGTTGTCGCTTGGGCCGGAAGCGTGGCGGAAGGGGAGGAGGGAGGAGG
GAGGGGAGGAGGAGGAAGGAGAAGGGGAGGAAGAGGAGGAGGAGGGGGA

Coding sequence (CDS) from alignment at scaffold_4:1648..4146+

>mRNA_1795 ID=mRNA_1795|Name=jgi.p|Nanoce1779_2|628013|organism=Nannochloropsis oceanica|type=CDS|length=3165bp|location=Sequence derived from alignment at scaffold_4:1648..4146+ (Nannochloropsis oceanica)
ATGGGGAGGGTCCTGGAGGAGGGGGAGGGTGGGAAGAAGGGAGGGCGGGC
GGGAAAGCGAGATGAAGGCCGGAGGAGGGGCAACGCATTCAAGGGCCGGC
GTCTCATTCCTCTTGATGAGGAGGGGGGGGAGGAGGTGATGAAGGAGAGG
ACAGAGGAGGGAAAGGAGCAGGAGGAGAAGGGAGGGAGGAAGTGGAGGGG
GTTGGGGTTGGAGACACGCATCCCCTTGCGGGGTCCACCGGGAATTGTAC
AGTCCACAGACTGGGCACTTCGGCTGGGGGCGACATTACGCCGGGTGGTG
CGAGCCCGACTGCTCACTGCGCTGAAAGACCGGCTGTACCGAGAGCATGG
AAGGGAAATTGAGGAGCGGGGGCTACCGTTGCCCTACCTTATCTTCCGCA
TCTCCCAAGCCTGTCTAAGGCAGGAAGGGAAGGAGGGAGGGTTGGAGGGA
GGGGAAGCGTTTTCAGTGTTGGAGACGCCGTGGTTGCTGAGCGACGACAC
GGACGACCCCAGCCTCCTTGCCCGCTTCCCCACTTGGAGGCCTCCTTTAA
AAACCTCACACATTCCCTCTTCTCCTCGCCTCCGTCATCGTCTCCACCCT
CGCTCCCACCCTCCCTGGCCTTTTTCTCCATAAATGGGGAGGGTCCTGGA
GGAGGGGGAGGGTGGGAAGAAGGGAGGGCGGGCGGGAAAGCGAGATGAAG
GCCGGAGGAGGGGCAACGCATTCAAGGGCCGGCGTCTCATTCCTCTTGAT
GAGGAGGGGGGGGAGGAGGTGATGAAGGAGAGGACAGAGGAGGGAAAGGA
GCAGGAGGAGAAGGGAGGGAGGAAGTGGAGGGGGTTGGGGTTGGAGACAC
GCATCCCCTTGCGGGGTCCACCGGGAATTGTACAGTCCACAGACTGGGCA
CTTCGGCTGGGGGCGACATTACGCCGGGTGGTGCGAGCCCGACTGCTCAC
TGCGCTGAAAGACCGGCTGTACCGAGAGCATGGAAGGGAAATTGAGGAGC
GGGGGCTACCGTTGCCCTACCTTATCTTCCGCATCTCCCAAGCCTGTCTA
AGGCAGGAAGGGAAGGAGGGAGGGTTGGAGGGAGGGGAAGCGTTTTCAGT
GTTGGAGACGCCGTGGTTGCTGAGCGACGACACGGACGACCCCAGCCTCC
TTGCCCGCTTCCCCACTTGGAGGCCTCCTTTAAAAACCTCACACATTCCC
TCTTCTCCTCGCCTCCGTCATCGTCTCCACCCTCGCTCCCACCCTCCCTG
GCCTTTTTCTCCATAAATGGGGAGGGTCCTGGAGGAGGGGGAGGGTGGGA
AGAAGGGAGGGCGGGCGGGAAAGCGAGATGAAGGCCGGAGGAGGGGCAAC
GCATTCAAGGGCCGGCGTCTCATTCCTCTTGATGAGGAGGGGGGGGAGGA
GGTGATGAAGGAGAGGACAGAGGAGGGAAAGGAGCAGGAGGAGAAGGGAG
GGAGGAAGTGGAGGGGGTTGGGGTTGGAGACACGCATCCCCTTGCGGGGT
CCACCGGGAATTGTACAGTCCACAGACTGGGCACTTCGGCTGGGGGCGAC
ATTACGCCGGGTGGTGCGAGCCCGACTGCTCACTGCGCTGAAAGACCGGC
TGTACCGAGAGCATGGAAGGGAAATTGAGGAGCGGGGGCTACCGTTGCCC
TACCTTATCTTCCGCATCTCCCAAGCCTGTCTAAGGCAGGAAGGGAAGGA
GGGAGGGTTGGAGGGAGGGGAAGCGTTTTCAGTGTTGGAGACGCCGTGGT
TGCTGAGCGACGACACGGACGACCCCAGCCTCCTTGCCCGCTTCCCCACT
TGGAGGCCTCCTTTAAAAACCTCACACATTCCCTCTTCTCCTCGCCTCCG
TCATCGTCTCCACCCTCGCTCCCACCCTCCCTGGCCTTTTTCTCCATAAA
TGGGGAGGGTCCTGGAGGAGGGGGAGGGTGGGAAGAAGGGAGGGCGGGCG
GGAAAGCGAGATGAAGGCCGGAGGAGGGGCAACGCATTCAAGGGCCGGCG
TCTCATTCCTCTTGATGAGGAGGGGGGGGAGGAGGTGATGAAGGAGAGGA
CAGAGGAGGGAAAGGAGCAGGAGGAGAAGGGAGGGAGGAAGTGGAGGGGG
TTGGGGTTGGAGACACGCATCCCCTTGCGGGGTCCACCGGGAATTGTACA
GTCCACAGACTGGGCACTTCGGCTGGGGGCGACATTACGCCGGGTGGTGC
GAGCCCGACTGCTCACTGCGCTGAAAGACCGGCTGTACCGAGAGCATGGA
AGGGAAATTGAGGAGCGGGGGCTACCGTTGCCCTACCTTATCTTCCGCAT
CTCCCAAGCCTGTCTAAGGCAGGAAGGGAAGGAGGGAGGGTTGGAGGGAG
GGGAAGCGTTTTCAGTGTTGGAGACGCCGTGGTTGCTGAGCGACGACACG
GACGACCCCAGCCTCCTTGCCCGCTTCCCCACTTGGAGGCCTCCTTTAAA
AACCTCACACATTCCCTCTTCTCCTCGCCTCCGTCATCGTCTCCACCCTC
GCTCCCACCCTCCCTGGCCTTTTTCTCCATAAATGGGGAGGGTCCTGGAG
GAGGGGGAGGGTGGGAAGAAGGGAGGGCGGGCGGGAAAGCGAGATGAAGG
CCGGAGGAGGGGCAACGCATTCAAGGGCCGGCGTCTCATTCCTCTTGATG
AGGAGGGGGGGGAGGAGGTGATGAAGGAGAGGACAGAGGAGGGAAAGGAG
CAGGAGGAGAAGGGAGGGAGGAAGTGGAGGGGGTTGGGGTTGGAGACACG
CATCCCCTTGCGGGGTCCACCGGGAATTGTACAGTCCACAGACTGGGCAC
TTCGGCTGGGGGCGACATTACGCCGGGTGGTGCGAGCCCGACTGCTCACT
GCGCTGAAAGACCGGCTGTACCGAGAGCATGGAAGGGAAATTGAGGAGCG
GGGGCTACCGTTGCCCTACCTTATCTTCCGCATCTCCCAAGCCTGTCTAA
GGCAGGAAGGGAAGGAGGGAGGGTTGGAGGGAGGGGAAGCGTTTTCAGTG
TTGGAGACGCCGTGGTTGCTGAGCGACGACACGGACGACCCCAGCCTCCT
TGCCCGCTTCCCCACTTGGAGGCCTCCTTTAAAAACCTCACACATTCCCT
CTTCTCCTCGCCTCCGTCATCGTCTCCACCCTCGCTCCCACCCTCCCTGG
CCTTTTTCTCCATAA

Synonyms

Publications