jgi.p|Nanoce1779_2|17863, mRNA_1793 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|17863
Unique NamemRNA_1793
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1199
Alignment locationscaffold_1:1530782..1532618 +

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Properties
Property NameValue
TranscriptId17949
TrackFilteredModels2
ProteinId17863
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1530782..1532618 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|17863gene_1793Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|17863mRNA_1793-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1793CDS_1793Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1793 ID=mRNA_1793|Name=jgi.p|Nanoce1779_2|17863|organism=Nannochloropsis oceanica|type=mRNA|length=1199bp
GGTGATGGCCCTGCCATCATCATCCCTGGATTTCCTACCACCCGTGCTCA
TGCCCTTCTACACCACTCTCTCGTCTCTCGAGGAATGGGTGCGCCGTAGT
CCTATCACCCACACCTGGGTCCGTTGGCCCCATGTCATGCCATGTCATGG
CCCTGGTTGTGTGCATCGGGCAGCCTCCTGCTGCATGGAAGGCATGGCCT
AACCTTCCCAGCCCTGCTGTTGCTTCCTTTTTTGCGTGCATTACAGCCGC
ACCCCGGGGAGCCCTGGACCTACAAGCACGCACCTTACCACACGACTAGG
GACCTTTTGGGAATTTTCAGGGCGTCCAGCGCTGTCACGCCGCAAATTTT
CCGCTGCACTGACACCAACATCCACGACGAATGCAAGATTTTCTCTGTCA
ACAAGCTTCAAAAAGACCGCCACCGCCAAAAGTCTTACTCGAACGAAGTG
AACCTGACGGTAGACGGCAGGGTCGTTGTCTTCAAATGCGACGACAACAG
TAATTTTCCCTGCGCATGCGTCATGGTGCTACTGTGTCAGGTCGTGGATT
ATTCCGGAAGTTCTATACACGTAGTGGATGACATTAGAGTGCAGGAGGTT
GGAAAAAAGCCGGTTCTTCTTGAAGGGAAGCATTGCATTCCCCAACGACT
TGGTCCAATCCATGTCAGAAGGTGGCAAGCACCGCAACAAAATGTCCGCA
TACGGCGTAATGGCCTGTCTCGGAAAGACTACCTTAATCGACGAATACAA
TACGGCATACAGCCTATCTGTATCGCCGCCTTTGGCTTCAGAGATGTACT
CCATTTTCGCCCGAGCCGCTTAGGGGAAGCTTTTTGGCGCCATCCTATTC
GTTGGATTCAAGAAGAAGCAAAATTAGGCCAAATGTCATTGTAAATCGAT
AATAAACAACATACACGGATGAAGGGGATCGTCCACACTCAGATCTGGCC
ACCATTTGTAAGATTCACAAGCTGCAGCAACCCACTCATATTACAGAACT
ACTATTGGTCAAGCCAGTGTGTTGTGAGACTGACCGTAATAAATATTGTG
TTTTTAAAGTTGGCATTATGGGCCTGACAATCAGCATCATTTTCCTGGGG
GATGTTTGGCTGCTTCGTTGAAGTAACCTTAGCTATGGGCCTCCAGTGCT
ATCATATAGGCTGTTTAAAACTTGTTTCTCATAAAGTATTTGCATGAGA
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protein sequence of jgi.p|Nanoce1779_2|17863

>mRNA_1793-protein ID=mRNA_1793-protein|Name=jgi.p|Nanoce1779_2|17863|organism=Nannochloropsis oceanica|type=polypeptide|length=251bp
MSWPWLCASGSLLLHGRHGLTFPALLLLPFLRALQPHPGEPWTYKHAPYH
TTRDLLGIFRASSAVTPQIFRCTDTNIHDECKIFSVNKLQKDRHRQKSYS
NEVNLTVDGRVVVFKCDDNSNFPCACVMVLLCQVVDYSGSSIHVVDDIRV
QEVGKKPVLLEGKHCIPQRLGPIHVRRWQAPQQNVRIRRNGLSRKDYLNR
RIQYGIQPICIAAFGFRDVLHFRPSRLGEAFWRHPIRWIQEEAKLGQMSL
*
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mRNA from alignment at scaffold_1:1530782..1532618+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1793 ID=mRNA_1793|Name=jgi.p|Nanoce1779_2|17863|organism=Nannochloropsis oceanica|type=mRNA|length=1837bp|location=Sequence derived from alignment at scaffold_1:1530782..1532618+ (Nannochloropsis oceanica)
GGTGATGGCCCTGCCATCATCATCCCTGGATTTCCTACCACCCGTGCTCA
TGCCCTTCTACACCACTCTCTCGTCTCTCGAGGAATGGGTGCGCCGTAGT
CCTATCACCCACACCTGGGTCCGTTGGCCCCATGTCATGCCATGTCATGG
CCCTGGTTGTGTGCATCGGGCAGCCTCCTGCTGCATGGAAGGCATGGCCT
AACCTTCCCAGCCCTGCTGTTGCTTCCTTTTTTGCGTGCATTACAGCCGC
ACCCCGGGGAGCCCTGGACCTACAAGCACGCACCTTACCACACGACTAGG
GACCTTTTGGGAATTTTCAGGGCGTCCAGGTGCGACAGGATGCACGTCTG
CGAGAGCATAATTGCTGATTGTCCCCGTCCCTCTTTGTTTACCCCCCCTT
CTTACCCCGTGCTCCTACTTCTCTTATCCTCTGCGGGGCTGGGATGCATG
ATGAGCCATTCTTTCCGACCCTTTAGGTCACAGTCGAGAATGCTGGGGAG
CTGGTCTTGGTGTGAGATGCCATCTTGTGTGTGTCCTCGTGGCTCATGCT
CCTTCCTCCCCTGTCCACCGTGCTTTCCTCCCTCTTACTCGAGCTGCGTC
ACGACCTTCCGCCCCTCCGTGTGTGTATGATGTTGCTATTACCTGTACTA
CCTGTACTCCTTGGATTTCTATTACCATGACAGGAAAGCCAATTACGACA
GTACGTCCTTCCCCCGTCACTCATCCTCCCCACCTCCCTCCTTCCCCCCA
TCATTTTTGCTCCAGCGCTGTCACGCCGCAAATTTTCCGCTGCACTGACA
CCAACATCCACGACGAATGCAAGATTTTCTCTGTCAACAAGCTTCAAAAA
GACCGCCACCGCCAAAAGTCTTACTCGAACGAAGTGAACCTGACGGTAGA
CGGCAGGGTCGTTGTCTTCAAATGCGACGACAACAGTAATTTTCCCTGCG
CATGCGTCATGGTGCTACTGTGTCAGGTCGTGGATTATTCCGGAAGTTCT
ATACACGTAGTGGATGACATTAGGTTTGTGCCGGCCCTGGTGCGGAGAGC
CAATAAACGAGTGACTACGTAATATAGGCATTTATCCGAATTGTGTTTTG
GACGTGTCCGGGCTATTTTTTAATCGATCTGCTTTCGAACTTTTTTCGAA
CCTTTCCGTCCTTTCTCACCCTCACTCGATTCAAATTATCCATCCGCATG
GCTTTAAAAACCATATACAATGTAGAGTGCAGGAGGTTGGAAAAAAGCCG
GTTCTTCTTGAAGGGAAGCATTGCATTCCCCAACGACTTGGTCCAATCCA
TGTCAGAAGGTGGCAAGCACCGCAACAAAATGTCCGCATACGGCGTAATG
GCCTGTCTCGGAAAGACTACCTTAATCGACGAATACAATACGGCATACAG
CCTATCTGTATCGCCGCCTTTGGCTTCAGAGATGTACTCCATTTTCGCCC
GAGCCGCTTAGGGGAAGCTTTTTGGCGCCATCCTATTCGTTGGATTCAAG
AAGAAGCAAAATTAGGCCAAATGTCATTGTAAATCGATAATAAACAACAT
ACACGGATGAAGGGGATCGTCCACACTCAGATCTGGCCACCATTTGTAAG
ATTCACAAGCTGCAGCAACCCACTCATATTACAGAACTACTATTGGTCAA
GCCAGTGTGTTGTGAGACTGACCGTAATAAATATTGTGTTTTTAAAGTTG
GCATTATGGGCCTGACAATCAGCATCATTTTCCTGGGGGATGTTTGGCTG
CTTCGTTGAAGTAACCTTAGCTATGGGCCTCCAGTGCTATCATATAGGCT
GTTTAAAACTTGTTTCTCATAAAGTATTTGCATGAGA
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Coding sequence (CDS) from alignment at scaffold_1:1530782..1532618+

>mRNA_1793 ID=mRNA_1793|Name=jgi.p|Nanoce1779_2|17863|organism=Nannochloropsis oceanica|type=CDS|length=2259bp|location=Sequence derived from alignment at scaffold_1:1530782..1532618+ (Nannochloropsis oceanica)
ATGTCATGGCCCTGGTTGTGTGCATCGGGCAGCCTCCTGCTGCATGGAAG
GCATGGCCTAACCTTCCCAGCCCTGCTGTTGCTTCCTTTTTTGCGTGCAT
TACAGCCGCACCCCGGGGAGCCCTGGACCTACAAGCACGCACCTTACCAC
ACGACTAGGGACCTTTTGGGAATTTTCAGGGCGTCCAGCGCTGTCACGCC
GCAAATTTTCCGCTGCACTGACACCAACATCCACGACGAATGCAAGATTT
TCTCTGTCAACAAGCTTCAAAAAGACCGCCACCGCCAAAAGTCTTACTCG
AACGAAGTGAACCTGACGGTAGACGGCAGGGTCGTTGTCTTCAAATGCGA
CGACAACAGTAATTTTCCCTGCGCATGCGTCATGGTGCTACTGTGTCAGG
TCGTGGATTATTCCGGAAGTTCTATACACGTAGTGGATGACATTAGAGTG
CAGGAGGTTGGAAAAAAGCCGGTTCTTCTTGAAGGGAAGCATTGCATTCC
CCAACGACTTGGTCCAATCCATGTCAGAAGGTGGCAAGCACCGCAACAAA
ATGTCCGCATACGGCGTAATGGCCTGTCTCGGAAAGACTACCTTAATCGA
CGAATACAATACGGCATACAGCCTATCTGTATCGCCGCCTTTGGCTTCAG
AGATGTACTCCATTTTCGCCCGAGCCGCTTAGGGGAAGCTTTTTGGCGCC
ATCCTATTCGTTGGATTCAAGAAGAAGCAAAATTAGGCCAAATGTCATTG
TAAATGTCATGGCCCTGGTTGTGTGCATCGGGCAGCCTCCTGCTGCATGG
AAGGCATGGCCTAACCTTCCCAGCCCTGCTGTTGCTTCCTTTTTTGCGTG
CATTACAGCCGCACCCCGGGGAGCCCTGGACCTACAAGCACGCACCTTAC
CACACGACTAGGGACCTTTTGGGAATTTTCAGGGCGTCCAGCGCTGTCAC
GCCGCAAATTTTCCGCTGCACTGACACCAACATCCACGACGAATGCAAGA
TTTTCTCTGTCAACAAGCTTCAAAAAGACCGCCACCGCCAAAAGTCTTAC
TCGAACGAAGTGAACCTGACGGTAGACGGCAGGGTCGTTGTCTTCAAATG
CGACGACAACAGTAATTTTCCCTGCGCATGCGTCATGGTGCTACTGTGTC
AGGTCGTGGATTATTCCGGAAGTTCTATACACGTAGTGGATGACATTAGA
GTGCAGGAGGTTGGAAAAAAGCCGGTTCTTCTTGAAGGGAAGCATTGCAT
TCCCCAACGACTTGGTCCAATCCATGTCAGAAGGTGGCAAGCACCGCAAC
AAAATGTCCGCATACGGCGTAATGGCCTGTCTCGGAAAGACTACCTTAAT
CGACGAATACAATACGGCATACAGCCTATCTGTATCGCCGCCTTTGGCTT
CAGAGATGTACTCCATTTTCGCCCGAGCCGCTTAGGGGAAGCTTTTTGGC
GCCATCCTATTCGTTGGATTCAAGAAGAAGCAAAATTAGGCCAAATGTCA
TTGTAAATGTCATGGCCCTGGTTGTGTGCATCGGGCAGCCTCCTGCTGCA
TGGAAGGCATGGCCTAACCTTCCCAGCCCTGCTGTTGCTTCCTTTTTTGC
GTGCATTACAGCCGCACCCCGGGGAGCCCTGGACCTACAAGCACGCACCT
TACCACACGACTAGGGACCTTTTGGGAATTTTCAGGGCGTCCAGCGCTGT
CACGCCGCAAATTTTCCGCTGCACTGACACCAACATCCACGACGAATGCA
AGATTTTCTCTGTCAACAAGCTTCAAAAAGACCGCCACCGCCAAAAGTCT
TACTCGAACGAAGTGAACCTGACGGTAGACGGCAGGGTCGTTGTCTTCAA
ATGCGACGACAACAGTAATTTTCCCTGCGCATGCGTCATGGTGCTACTGT
GTCAGGTCGTGGATTATTCCGGAAGTTCTATACACGTAGTGGATGACATT
AGAGTGCAGGAGGTTGGAAAAAAGCCGGTTCTTCTTGAAGGGAAGCATTG
CATTCCCCAACGACTTGGTCCAATCCATGTCAGAAGGTGGCAAGCACCGC
AACAAAATGTCCGCATACGGCGTAATGGCCTGTCTCGGAAAGACTACCTT
AATCGACGAATACAATACGGCATACAGCCTATCTGTATCGCCGCCTTTGG
CTTCAGAGATGTACTCCATTTTCGCCCGAGCCGCTTAGGGGAAGCTTTTT
GGCGCCATCCTATTCGTTGGATTCAAGAAGAAGCAAAATTAGGCCAAATG
TCATTGTAA
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Synonyms
Publications