jgi.p|Nanoce1779_2|573498, mRNA_1792 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573498
Unique NamemRNA_1792
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length998
Alignment locationscaffold_1:1530008..1531110 +

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Properties
Property NameValue
TranscriptId573584
TrackFilteredModels2
ProteinId573498
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1530008..1531110 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573498gene_1792Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573498mRNA_1792-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1792CDS_1792Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1792 ID=mRNA_1792|Name=jgi.p|Nanoce1779_2|573498|organism=Nannochloropsis oceanica|type=mRNA|length=998bp
CCTGTCATGGGGCGCTCGCGCATTTCTTGGGGGACGCTTCCTGCCGCTGG
CCCGGCCTGGCTGAGCGCTGTCGAAGTGCGCCCACGACGATCATTACTCA
TCACCCCAAACACAAAATCAGCTGCAAAAACCTTCACGTCGTAGCCTTCA
TATTCTTTTGTATCTTCATGCGCATGCTTGTTGTCTAACCTTCATATTTT
GTCATGCTCAGTGAGGCCTTTTCGAGGGCATTTCTTCTCGCCTTGCTTCT
TGATGTTTTTCTGGCGATGCCTTATAGCCGCCGACATGCCGGTTTTGAAT
TCCTTCCCACAATAGTTTCATGGCCACGAGTTCCCTCTCTTGCCTCAGGG
ATCTCTTTCCCTTCCCAAGCGCACACGTGTTTCACCCATGTGTCCATGCC
ACTGTATTGCCCCGCCCTTATGCTGCTTGCTTTGACTAGCCAAGCAAGTG
CTTCGACCCAGCAGTCCTTCTCTCATCATCACCCAACGGCTCTCGCTTTC
TCCCTTCTTCCGGCCTGCACATCATAACCTCTATCTGCCCTCCCGACGAC
CATTGCCAACTCCGAGCATGGATATAAATGCAGCAAATGCTAGCGGCTGT
CCAAGGGTCCCACCCTGTTGCCCTACATCAAGATGCATGTAATGTGCTTT
GCCCTCCTTTTGCCAGTGAGGTGATGGCCCTGCCATCATCATCCCTGGAT
TTCCTACCACCCGTGCTCATGCCCTTCTACACCACTCTCTCGTCTCTCGA
GGAATGGGTGCGCCGTAGTCCTATCACCCACACCTGGGTCCGTTGGCCCC
ATGTCATGCCATGTCATGGCCCTGGTTGTGTGCATCGGGCAGCCTCCTGC
TGCATGGAAGGCATGGCCTAACCTTCCCAGCCCTGCTGTTGCTTCCTTTT
TTGCGTGCATTACAGCCGCACCCCGGGGAGCCCTGGACCTACAAGCACGC
ACCTTACCACACGACTAGGGACCTTTTGGGAATTTTCAGGGCGTCCAG
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protein sequence of jgi.p|Nanoce1779_2|573498

>mRNA_1792-protein ID=mRNA_1792-protein|Name=jgi.p|Nanoce1779_2|573498|organism=Nannochloropsis oceanica|type=polypeptide|length=108bp
MLSEAFSRAFLLALLLDVFLAMPYSRRHAGFEFLPTIVSWPRVPSLASGI
SFPSQAHTCFTHVSMPLYCPALMLLALTSQASASTQQSFSHHHPTALAFS
LLPACTS*
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mRNA from alignment at scaffold_1:1530008..1531110+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1792 ID=mRNA_1792|Name=jgi.p|Nanoce1779_2|573498|organism=Nannochloropsis oceanica|type=mRNA|length=1103bp|location=Sequence derived from alignment at scaffold_1:1530008..1531110+ (Nannochloropsis oceanica)
CCTGTCATGGGGCGCTCGCGCATTTCTTGGGGGACGCTTCCTGCCGCTGG
CCCGGCCTGGCTGAGCGCTGTCGAAGTGCGCCCACGACGATCATTACTCA
TCACCCCAAACACAAAATCAGCTGCAAAAACCTTCACGTCGTAGCCTTCA
TATTCTTTTGTATCTTCATGCGCATGCTTGTTGTCTAACCTTCATATTTT
GTCATGCTCAGTGAGGCCTTTTCGAGGGCATTTCTTCTCGCCTTGCTTCT
TGATGTTTTTCTGGCGATGCCTTATAGCCGCCGACATGCCGGTTTTGAAT
TCCTTCCCACAATAGTTTCATGGCCACGAGTTCCCTCTCTTGCCTCAGGG
ATCTCTTTCCCTTCCCAAGCGCACACGTGTTTCACCCATGTGTCCATGCC
ACTGTATTGCCCCGCCCTTATGCTGCTTGCTTTGACTAGCCAAGCAAGTG
CTTCGACCCAGCAGTCCTTCTCTCATCATCACCCAACGGCTCTCGCTTTC
TCCCTTCTTCCGGCCTGCACATCATAACCTCTATCTGCCCTCCCGACGAC
CATTGCCAACTCCGAGCATGGATATAAATGCAGCAAATGCTAGGTACGTG
GTACCATCTGGTGGGAGCATGAGGAGGCCGTGCTCGAGCCCCTCTTTTCT
AGACAATAATTGCCCCCCGTCGTCCACATTATCGCCCCTCACATACAGCG
GCTGTCCAAGGGTCCCACCCTGTTGCCCTACATCAAGATGCATGTAATGT
GCTTTGCCCTCCTTTTGCCAGTGAGGTGATGGCCCTGCCATCATCATCCC
TGGATTTCCTACCACCCGTGCTCATGCCCTTCTACACCACTCTCTCGTCT
CTCGAGGAATGGGTGCGCCGTAGTCCTATCACCCACACCTGGGTCCGTTG
GCCCCATGTCATGCCATGTCATGGCCCTGGTTGTGTGCATCGGGCAGCCT
CCTGCTGCATGGAAGGCATGGCCTAACCTTCCCAGCCCTGCTGTTGCTTC
CTTTTTTGCGTGCATTACAGCCGCACCCCGGGGAGCCCTGGACCTACAAG
CACGCACCTTACCACACGACTAGGGACCTTTTGGGAATTTTCAGGGCGTC
CAG
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Coding sequence (CDS) from alignment at scaffold_1:1530008..1531110+

>mRNA_1792 ID=mRNA_1792|Name=jgi.p|Nanoce1779_2|573498|organism=Nannochloropsis oceanica|type=CDS|length=324bp|location=Sequence derived from alignment at scaffold_1:1530008..1531110+ (Nannochloropsis oceanica)
ATGCTCAGTGAGGCCTTTTCGAGGGCATTTCTTCTCGCCTTGCTTCTTGA
TGTTTTTCTGGCGATGCCTTATAGCCGCCGACATGCCGGTTTTGAATTCC
TTCCCACAATAGTTTCATGGCCACGAGTTCCCTCTCTTGCCTCAGGGATC
TCTTTCCCTTCCCAAGCGCACACGTGTTTCACCCATGTGTCCATGCCACT
GTATTGCCCCGCCCTTATGCTGCTTGCTTTGACTAGCCAAGCAAGTGCTT
CGACCCAGCAGTCCTTCTCTCATCATCACCCAACGGCTCTCGCTTTCTCC
CTTCTTCCGGCCTGCACATCATAA
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Synonyms
Publications