jgi.p|Nanoce1779_2|573494, mRNA_1790 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573494
Unique NamemRNA_1790
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length972
Alignment locationscaffold_1:1527082..1528053 +

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Properties
Property NameValue
TranscriptId573580
TrackFilteredModels2
ProteinId573494
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1527082..1528053 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573494gene_1790Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573494mRNA_1790-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1790CDS_1790Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1790 ID=mRNA_1790|Name=jgi.p|Nanoce1779_2|573494|organism=Nannochloropsis oceanica|type=mRNA|length=972bp
ACAGGAAGAGTGTGAACGTGCTGTTGTCCTAATCCTCCTTCCCAAGCCCT
CAAGAGAAACCAGTCGATCGGAGCCCTCGAACTCGAAGCCAAGCCTTGCC
CATCAAACAAGCAATATGAGCAAGCGCGGCGCGGGGGAATGGGTCTCCCT
CGCAGGCCTGCGGACAGATGGACGACGCCCGCACGAGCTGCGACGCCTGC
GCTGTGCCCTAGGTACAAATCCGCACGCAGATGGCTCGGCGTCTCTGGAG
CAGGGGCAGACGCAAGTCCTTGCCATCGTCCACGGCCCGCACGAGCCGAC
CCGGCGCAGTGAGGCCCTTCACGACAAGTGTATCATTGAATGCGAATTCT
ACAATACACCTTTCGCAGGTTTCGACCGCAAGAAGCGCCGGGCGACAGAC
CGTGCTAGCCTAGAGGTGTCCTTGATCGTGAAGCAGACGTTCGAGGCGGC
CATCTTGCGGCATATCTACCCGCGCACGCAAATTGACATTCAGGTGTATG
TCCTACAGACGGACGGATCCGCCCTGCCCGCCGTCATCAACGCCGTTTCC
CTCGCTCTAGTGGACGCGGGCATCGCCATGAAAGAGATGGTTGCCGCCTG
CTCAGTGGCCCTGCTTGACGACCAGGCCGTGCTGGACGTGACGTACAAGG
AGCAGAGCTCGGGCGGTGCCTACCTGCCCCTGGCCGCCTTCCCCGCTCAT
GATCAGGTGCTGCTCCTGCAGTGCGAGTCCCGCCTGGACGGTGCACGTTT
CGAGGAGCTTATAGGTGTGGCTTTGGGGGGCACACGGCAGGTGGCGGACC
TGATGCAGGCCCAGGTCAGGGAACACACCAAGCAGTTGGCGGGAGCCAAA
CTCGCCCTGTTGCGGTAGCGGGGCAGCGAGGGCGGAAGATGCGAAAAGAA
AGGGGAGGATCTTGAAGTAAATGTTTAAAAATAACTAGCAAATTAAAGAA
CGAAGAAGGATCGTAATTTGTG
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protein sequence of jgi.p|Nanoce1779_2|573494

>mRNA_1790-protein ID=mRNA_1790-protein|Name=jgi.p|Nanoce1779_2|573494|organism=Nannochloropsis oceanica|type=polypeptide|length=251bp
MSKRGAGEWVSLAGLRTDGRRPHELRRLRCALGTNPHADGSASLEQGQTQ
VLAIVHGPHEPTRRSEALHDKCIIECEFYNTPFAGFDRKKRRATDRASLE
VSLIVKQTFEAAILRHIYPRTQIDIQVYVLQTDGSALPAVINAVSLALVD
AGIAMKEMVAACSVALLDDQAVLDVTYKEQSSGGAYLPLAAFPAHDQVLL
LQCESRLDGARFEELIGVALGGTRQVADLMQAQVREHTKQLAGAKLALLR
*
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mRNA from alignment at scaffold_1:1527082..1528053+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1790 ID=mRNA_1790|Name=jgi.p|Nanoce1779_2|573494|organism=Nannochloropsis oceanica|type=mRNA|length=972bp|location=Sequence derived from alignment at scaffold_1:1527082..1528053+ (Nannochloropsis oceanica)
ACAGGAAGAGTGTGAACGTGCTGTTGTCCTAATCCTCCTTCCCAAGCCCT
CAAGAGAAACCAGTCGATCGGAGCCCTCGAACTCGAAGCCAAGCCTTGCC
CATCAAACAAGCAATATGAGCAAGCGCGGCGCGGGGGAATGGGTCTCCCT
CGCAGGCCTGCGGACAGATGGACGACGCCCGCACGAGCTGCGACGCCTGC
GCTGTGCCCTAGGTACAAATCCGCACGCAGATGGCTCGGCGTCTCTGGAG
CAGGGGCAGACGCAAGTCCTTGCCATCGTCCACGGCCCGCACGAGCCGAC
CCGGCGCAGTGAGGCCCTTCACGACAAGTGTATCATTGAATGCGAATTCT
ACAATACACCTTTCGCAGGTTTCGACCGCAAGAAGCGCCGGGCGACAGAC
CGTGCTAGCCTAGAGGTGTCCTTGATCGTGAAGCAGACGTTCGAGGCGGC
CATCTTGCGGCATATCTACCCGCGCACGCAAATTGACATTCAGGTGTATG
TCCTACAGACGGACGGATCCGCCCTGCCCGCCGTCATCAACGCCGTTTCC
CTCGCTCTAGTGGACGCGGGCATCGCCATGAAAGAGATGGTTGCCGCCTG
CTCAGTGGCCCTGCTTGACGACCAGGCCGTGCTGGACGTGACGTACAAGG
AGCAGAGCTCGGGCGGTGCCTACCTGCCCCTGGCCGCCTTCCCCGCTCAT
GATCAGGTGCTGCTCCTGCAGTGCGAGTCCCGCCTGGACGGTGCACGTTT
CGAGGAGCTTATAGGTGTGGCTTTGGGGGGCACACGGCAGGTGGCGGACC
TGATGCAGGCCCAGGTCAGGGAACACACCAAGCAGTTGGCGGGAGCCAAA
CTCGCCCTGTTGCGGTAGCGGGGCAGCGAGGGCGGAAGATGCGAAAAGAA
AGGGGAGGATCTTGAAGTAAATGTTTAAAAATAACTAGCAAATTAAAGAA
CGAAGAAGGATCGTAATTTGTG
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Coding sequence (CDS) from alignment at scaffold_1:1527082..1528053+

>mRNA_1790 ID=mRNA_1790|Name=jgi.p|Nanoce1779_2|573494|organism=Nannochloropsis oceanica|type=CDS|length=753bp|location=Sequence derived from alignment at scaffold_1:1527082..1528053+ (Nannochloropsis oceanica)
ATGAGCAAGCGCGGCGCGGGGGAATGGGTCTCCCTCGCAGGCCTGCGGAC
AGATGGACGACGCCCGCACGAGCTGCGACGCCTGCGCTGTGCCCTAGGTA
CAAATCCGCACGCAGATGGCTCGGCGTCTCTGGAGCAGGGGCAGACGCAA
GTCCTTGCCATCGTCCACGGCCCGCACGAGCCGACCCGGCGCAGTGAGGC
CCTTCACGACAAGTGTATCATTGAATGCGAATTCTACAATACACCTTTCG
CAGGTTTCGACCGCAAGAAGCGCCGGGCGACAGACCGTGCTAGCCTAGAG
GTGTCCTTGATCGTGAAGCAGACGTTCGAGGCGGCCATCTTGCGGCATAT
CTACCCGCGCACGCAAATTGACATTCAGGTGTATGTCCTACAGACGGACG
GATCCGCCCTGCCCGCCGTCATCAACGCCGTTTCCCTCGCTCTAGTGGAC
GCGGGCATCGCCATGAAAGAGATGGTTGCCGCCTGCTCAGTGGCCCTGCT
TGACGACCAGGCCGTGCTGGACGTGACGTACAAGGAGCAGAGCTCGGGCG
GTGCCTACCTGCCCCTGGCCGCCTTCCCCGCTCATGATCAGGTGCTGCTC
CTGCAGTGCGAGTCCCGCCTGGACGGTGCACGTTTCGAGGAGCTTATAGG
TGTGGCTTTGGGGGGCACACGGCAGGTGGCGGACCTGATGCAGGCCCAGG
TCAGGGAACACACCAAGCAGTTGGCGGGAGCCAAACTCGCCCTGTTGCGG
TAG
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Synonyms
Publications